KEGG   Oncorhynchus tshawytscha (Chinook salmon): 112259978
Entry
112259978         CDS       T05605                                 
Name
(RefSeq) synaptopodin-2 isoform X1
  KO
K24066  synaptopodin-2
Organism
otw  Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:otw00001]
 09140 Cellular Processes
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    112259978
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04990 Domain-containing proteins not elsewhere classified [BR:otw04990]
    112259978
Domain-containing proteins not elsewhere classified [BR:otw04990]
 PDZ domain-containing proteins
  Other PDZ domain-containing proteins
   112259978
SSDB
Motif
Pfam: PDZ_6 PDZ Calsarcin
Other DBs
NCBI-GeneID: 112259978
NCBI-ProteinID: XP_024290498
LinkDB
Position
LG10:complement(24609810..24675525)
AA seq 1794 aa
MGTGDYICVTVRGGAPWGFSLCQGEGDAYRPLQVYQVEEGGRASLAGVCEGDEVVSLNGE
PCGDLSLPEAIALIDACVNCLQLLVKRCCALTPEAFNLEETYFGTRESSGEALESTNLRI
LSLCRLQPPRELYIAESQDETYYGETESDTEAARGTHLVRTQLCGPESQLLGGGGYGGRV
GPQGGGFSPGAMVELQLSLSEHTLEDPVCTSLGSALGIEGEIQAREALQNKALLHTTTHS
LYVCGPAREPLSQHGVVEITLQHPAAGRGSPCLVEGEGACGASGNVGGAPREEGAGQSQG
APASFTVSFGIPKEGAEPAEEPDSDSEKDLGKPNKHRARHARLRRSESLSDKQVKEAKSK
CKRIAILLNADAPNPNNKGVLMFKRHRQRAKKYTLVSYGTGESEPEYEEDDSEEDYEEKD
PRAIKFTLLATTSDSELDEDFITNVHGGGRVITCDWDTGLLNIERKLNSGEEMEQLPNTT
GKGATMFSQRRQRMDEIAAEHEEMRRQGIPVEGVQEVEKHAAYQQMEERSYMQATTESQA
YMDVNVQQKQQQQYQQFQEQQYYEQQQQQQQQYQQQQQYQQQQQYEQQQYNQQQQYQQQQ
QYEQQQYHQQQQIQQYSSNMNGVANHQSNEMQSSMSNRTTQPFSVQNQVPVPFLTPMSGN
NQEAMSQGEQIASRDERISTPAIKSGILQDTRNRFKGKPMFNFKQAPKVPPNPELMNLLN
RSDKKLDFESATEEDYLSLGAEACNFLQSPRVKHKTPPPVAPKPIINPNSPPWSPQPELA
NQELPLHAENSVPAPATASEPESAPAPELDPTPVPAPEPSPPLAPQEVPANTPSPEKHTW
SPPGSQAEQQPQQVPAWGRNGPSPPQPHSQPEPQVSSKAPQQTQAQQQPQLQPPVSTWTP
AEMKPQAPAPSQSPPQLPWVTPQPPPPQPQAQPQPPINYWAAQPQWAQPQEQAQVQPPWV
QPQEQVQQQPQSHWAQPQEQVQQQPQPPWAQPQEQVQQQPQPPWVQPQEHVQQQPQPPWG
QQPQPPQQAWPQAQAQPQPPWVSSPQPPMTAWTSPQSQAQPPQPPWAQSAQPQPTAQPQP
HMNSWSQAPAQAQAPAQAQAQLPINAWTPDQNQVQPQSHWAQTTPTQSPSQQCWQQPPPQ
QTPPQPPMNAWAPAQAQPQTHTSTWAPQPQQAPVNTQTPMDRLAQPSPKPGNAPQNAPRS
IPPPRPQRMNSYTLGERSSSPLINPMASVLVPVRGMGSALSMPAVTGKGADLFAKRQSRM
EKYVVDSDTVLAATAQAAQQAQAATAQENKARSTSPSPSVPHSWKYSPNCRAPPTSNYNP
IQSPSYPPGAIKQPPPSSPVAKAKKGKGKPACKPLAVIDVMKHQPYQLNASLFTYGPAVE
AAEAAKAAAPKPAPAPAPVPPNQNQPISYEQLSPVQPAGPMNSAYPQQPQQPYGMPPQPH
MHDSPYHQVPINAYQPPNNPYQQAPAGPYQQPYNPLYQQAPPAPYLPQHHPQPQAPNSSY
QPTPQGPYQPAHSPPYQAAPQATYQPLPPSTYVVPSFPIAAKPESISGGSTAPKPRFMAK
KSSAQEFGRSYNLSPPAAKAPSLGLRSSSGSPFPSYKPLVQALSAQALPGRQTSWLDRSH
KPPSPWEAAAHHPMGLVDEAFAFQNLQQAIAFNVRSAAQRKLLPEPPAEWKARVSDDPPR
KTEVWNPNQRWNKRQSWGQSQGQSQGQSQGQSQGQSRSYSRVMPPFLSPTKSIASAPAGP
TGYRSLPRQWQPQRFLTETNIGPSGAIHGYGRPLGGQQQPSYRSVYHTNWSWRR
NT seq 5385 nt   +upstreamnt  +downstreamnt
atgggcactggggattatatctgtgtaacggtgcgcggaggcgcgccctggggcttcagt
ctctgccaaggagagggagatgcctaccgacctttgcaggtttatcaggtggaagaggga
ggtcgtgcgtccctggccggggtttgtgagggggatgaggtggtgtcgctgaatggagaa
ccctgcggtgacctttccctcccagaagctattgctctcattgacgcctgcgtcaactgc
ctgcaattactggtcaaaagatgctgtgcactaacccccgaggcatttaatttagaggag
acctactttggcacaagggagtcctctggtgaggctttggaaagcaccaacctccgcatc
ctgtccctttgcaggctccaaccacccagagagctctacatcgctgagtcccaggatgag
acctactatggggagacagagagtgacacggaggccgccagagggacccatctggtccgt
acccagctctgcggcccagagtcccagttactcggagggggagggtacggaggtcgagta
ggaccccagggagggggtttctccccaggggcaatggtggagctccagttgtccctctct
gaacacaccctggaggatcctgtctgcacctccctggggagtgctcttggaatagagggg
gagatccaggcgagagaggccctccagaacaaggccctcctccataccaccacccactcg
ctctacgtctgtggcccagctagggagcccctaagtcagcatggagtggtggagatcacc
ctgcagcatcccgcagccggaaggggttctccatgtctggtagagggggagggtgcctgt
ggggccagtggaaatgttggtggagcccccagggaggaaggagcagggcaaagccaggga
gctcctgcctccttcactgtctccttcggaattcccaaagagggtgccgagccggcagag
gagccagactcggattcagagaaggaccttgggaaacccaacaagcaccgggccaggcac
gccaggctcaggcgcagtgagagcctgtcagataagcaggtgaaggaggccaagtctaaa
tgtaagcgcattgctattcttctgaacgctgacgctcccaaccccaacaacaagggggtg
ttgatgttcaagaggcatcgacagagggccaagaagtacacactcgtcagctacggcact
ggtgagagcgaaccagagtacgaggaagacgacagcgaggaagactacgaggaaaaagac
ccccgagcgatcaaatttaccctcttagccaccaccagcgattcagagcttgacgaggac
ttcattactaatgtccatggtggaggcagagtgataacctgcgactgggacacgggacta
ctcaatatcgagcgcaagctcaattccggagaggagatggagcaactgcccaacaccacg
ggcaagggggccacaatgttttcccagcgccgccagcgcatggatgagatcgctgccgaa
catgaggagatgaggcgccaggggattcctgtggagggagtgcaggaggtggagaagcat
gcagcctaccagcagatggaggagcgctcgtacatgcaggccaccacagagagccaggcc
tacatggacgtgaacgtgcaacagaagcagcagcaacagtatcagcagttccaagaacag
cagtattacgagcagcaacagcagcagcagcagcaataccagcagcagcagcaataccag
cagcaacaacagtacgagcagcagcaatacaaccagcagcagcaataccagcagcaacaa
cagtacgagcagcagcagtaccaccagcagcagcaaattcaacagtactcatctaacatg
aatggcgttgccaaccaccaaagcaatgaaatgcagagttctatgagcaatcgaaccacc
caacccttctcggtacaaaaccaggtgcccgtcccatttcttaccccaatgagtgggaac
aaccaagaagcgatgagtcagggggagcagattgcctcgcgcgacgagcgcatttcaacg
ccggctattaagtctgggatcttgcaggacacaaggaacagattcaagggcaagccaatg
ttcaatttcaaacaggctcccaaagttccacccaacccggagcttatgaatctcctcaac
aggagtgacaagaagttggatttcgagtcagctacggaagaggactaccttagcttgggg
gctgaggcttgcaactttctccagtcaccaagggtcaaacataagacgcctccaccagtc
gctcccaagcccatcattaatcccaactctccgccttggtcccctcagcctgagctggcc
aaccaggagttgccactgcatgctgaaaatagtgtccccgcacctgctacagcctccgag
ccggagtccgcccctgctccagaactggatccaacccctgtaccggccccagaaccctcc
ccccctcttgcaccccaggaagttcctgccaacactccctctccagaaaaacacacatgg
agtcccccagggtcccaggcagagcagcagccccagcaagtgccagcctggggaagaaat
ggaccttctccacctcagcctcattcacaacccgagcctcaagtgagttctaaggctcca
caacaaacacaggcacaacagcagccacaactgcagccacccgtgagtacttggacacct
gctgaaatgaagccccaagctccagctccaagtcagtccccaccacagctcccttgggtg
actccccaacctcctcctcctcagcctcaagctcagcctcagccaccaattaattattgg
gctgcccagccccaatgggctcaacctcaagagcaagcacaggtccaaccaccatgggtt
cagcctcaagaacaagtacagcaacagccccagtcacattgggctcagcctcaagaacaa
gttcagcaacagccccagccaccatgggctcagcctcaagaacaagttcagcaacagccc
cagccaccttgggttcagcctcaagaacatgtacagcaacagccccagccaccatggggt
caacaacctcagcctccacaacaggcttggccccaggcccaggcccagcctcagccacct
tgggtgtcatcacctcagcctccaatgacggcatggacatcaccacagagccaggcccag
ccaccacagccaccttgggcccaatcagcccaaccccaacctacagctcagccccaaccc
catatgaattcatggtcccaagcacctgctcaggctcaagcacctgctcaggctcaagca
cagctacccattaatgcctggaccccagatcagaatcaggtccagccacagtcacattgg
gcccaaacaactccaacccaatccccatcccagcaatgctggcaacagccacctccacag
cagacacccccacagccacctatgaatgcatgggccccggctcaggcacagcctcagaca
cacacaagtacctgggccccacaaccacagcaagccccagtaaatacccagaccccgatg
gacagactggctcaaccttctccgaaacctgggaatgcgccacaaaatgctccccgttct
attcctccacctcgcccacagcgaatgaattcttacacgcttggagaaaggtcatcgtca
cccctcatcaatccaatggccagcgtgttggtaccagtgcgaggcatgggctcagctttg
tcaatgccggctgttacagggaaaggagctgatttgttcgccaagaggcagtctcgtatg
gagaagtatgtagtggattcggacactgtgctggcagccactgcacaggcagcccagcaa
gcccaggcagccactgcacaggaaaacaaggcaaggtccacatcgccctctccctccgta
cctcattcgtggaaatattcacccaattgcagagctccccctacatcaaattacaacccc
atacagtccccgtcctacccaccaggggccattaagcaaccccctccatctagccctgtg
gccaaagccaagaaagggaaaggcaaacctgcctgcaaaccccttgctgttatagatgtc
atgaaacatcagccgtatcagctcaatgcctccctttttacatatggcccagcagtggag
gctgccgaggctgccaaggccgctgcaccaaagcctgccccagcccctgccccagtccct
ccaaaccaaaaccaaccaatcagttatgagcaactttcccctgtccagccggctggacca
atgaattctgcctatccacagcagccccagcagccctatgggatgccccctcaaccacac
atgcacgatagtccctaccaccaagtcccaattaatgcttaccagccacctaataacccc
taccagcaagctcctgctggcccttaccaacaaccatataatcccctttaccaacaagcc
cctccagccccttatctaccccagcaccatccccagccccaagctccaaactcttcctac
caaccgaccccccaaggtccatatcagccagcccatagccccccttaccaagcagcaccc
caagccacctaccagccactacctcccagtacctatgtggtccccagctttccgatagcg
gcaaagcctgagtccatctctgggggcagcaccgctccaaagcccaggttcatggccaaa
aagagttcagcccaggagtttggccggagctacaatctgtccccacctgccgccaaagca
ccatcgctgggcctccggtcatcatctggatccccctttccctcatacaaacccctggta
caggccttgtctgctcaggccctcccggggaggcagacgtcatggctggacaggagtcac
aagcctccttccccctgggaggccgcagctcaccaccccatgggcctggttgacgaggcc
ttcgccttccagaacctccagcaggccatcgccttcaacgttcgctcagctgcccagcgc
aagctcctccctgagccccctgccgagtggaaggctagggtgtctgacgaccctcccagg
aagactgaggtatggaacccgaaccaaagatggaacaagagacagagctggggtcagagc
cagggtcagagccagggtcagagccagggtcagagccagggtcagagtcggagttacagc
agagttatgcctccgttcctgtccccgaccaagagcatagcctcggcccccgctggtccg
actggctacaggtccctgcccagacagtggcagccacagaggttcctgacggagaccaac
atcgggccctcgggggctattcatgggtacggaaggccccttgggggccagcagcagccg
agctacagatctgtgtaccacactaactggagctggagacgctag

DBGET integrated database retrieval system