Oncorhynchus tshawytscha (Chinook salmon): 112259991
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Entry
112259991 CDS
T05605
Symbol
frem1a
Name
(RefSeq) FRAS1-related extracellular matrix protein 1a isoform X1
KO
K23380
FRAS1-related extracelluar matrix protein 1/2
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
112259991 (frem1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04091 Lectins [BR:
otw04091
]
112259991 (frem1a)
Lectins [BR:
otw04091
]
C-Type lectins
Lecticans
112259991 (frem1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin_3
Frem_N
Lectin_C
Calx-beta
Big_9
Motif
Other DBs
NCBI-GeneID:
112259991
NCBI-ProteinID:
XP_042184330
UniProt:
A0AAZ3P9Z8
LinkDB
All DBs
Position
LG10:complement(25803232..25834115)
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AA seq
2200 aa
AA seq
DB search
MGLQRGALRWALPWLLLVMAGGSHGSLVKTNLGLRVKRGQPAYLQEGDLQFHIPPVKDAC
KVEVVLNEPITQRVGTLTPQVFDCHYLADDVKYVHNGCPILKEDTVKLRLYRFTETETFT
EVFFLRVEIMEPDCNIIKLGPKSLVVPEFYGLSDTLDGNVVSFHYERMTSLECSIRVNTH
ETHLPGHGQLVIGEPDQLEARGDEPESFIPLRQQLDNKARAMCKTEDCLNGLKLAKVIKV
PCDEFLVMGLRYQHIDPPSPDVDYIALRLDLTDTRSGSIYQSERAWIPVHIPGAVPNQPP
KPAFMSMFILEVDQFILTPLSTATLDAEDGETPKQLLVFNITKPPLEGFITHLSDHTRPI
FSFTWVDLNDMLIGYQPPNSSHTQRRNYEVEFEVHDFFFEKSAPIMVHMSVRTADTNAPR
VSWNMGLSLLEGQSRPITWDQLQIVDNDNFKAVRIITVDGLQHGRLTLRGGKGFMFTMAD
ILAGAVRYHHDDSDTTKDFIIFRITDGRHQTRHKFPINILPKDDSPPFLITNTVLELSEG
HTALLRGSILQASDMDSSDDYILFNITRPPQAGELMKIPGPGLTGYPVSRFLQKDLFHSV
VYYRHLGNEVFDDSFEVVLSDFHDPPNLSEPQVIVVHINPVPDQPPKEVPGVTRCLVVKE
TEVVHLTKKQLHFIDLESPDSELTYTVTTPPFYSRSYGGHDAGRLFLVDSIAKFTKDAEA
PVLRLFTQHAVNYMKVAYMPPILDIGPYPQHIQLVLSVTNQQGTTVAGICFNITVVPVDN
LAPEVHMKPLTVDEGGECWVGPDHLLLEDHDSTEESLRVELKREPQHGAVQLDGFSMKPG
QNFTVRDLKSLKVRYHHDSSETVGDAIELIATDGINAINFVLEVKVTLINDEVPVLMPGL
KPVLDCAEGQEVIITAEYIYATDADSDDNSLTYMIARQPYHGVVRKNAIVVDRFIQADIV
AGSITYEHTGAEIGLAPRHDTITFVISDGQAENTPSCCNDRGDTLKRGRTQVQESLPLYD
LKVTVFPVDSQMPSIATGDVFVVDEGGVAPITVAHLSASDVDTPLEELVISLVSPPQYGY
IENILPSPGFEKSNTGISIASFSYSDIMNEHVNYVQSRHQRIEPTADQFMLCVSDGKHTS
AHVHFYIIINPINDEVPEFLARNITVREGHMKELDPAVINAVDLDIPKNKLLFSVVQAPQ
HGTIMGRTYGNDVPANGRPVNRHRDAEVLVQDFTMQELRNGMSLMYMHDDSENMVDSFTI
QLNDGKHQLQRHVMVNVLPVNDEEPRVIRNNGLEVEAGEARLISSAILFAQDSDTTSQEI
VYMLESVPTQGLLQVKVGSDWVTQSAGMNCTQETVDMNLLRYLHTGPLGHTQDFFVFHLL
DGKNRSPAQHFHISLKDMEKGDIAIFVKPVKTSRGERVVLTTDVLLATDGTDKPEELFYI
VTVPPGNGHMEYIKHPGVAISTFSQMDIAANLVGYVHDNRATASLETLQFVVSNGKATRN
GTLEIYVETTDRVLPSLTCNSGLRVPQDSSVAVTPDALALSDPDTPPSDLLFFLAQPPQY
GTLLRGGVPLAAGGNFTQWDLQELEVTYRHGGGPSQIDRFAFTASDTTNRSFLLEGRVQT
EPVIFTIQIEPLDSSAPEVVQLQSLWKAEVLSDGRYGIYLSYRELRAQDGNTKDEDLTFH
IHRPPYFGYLENTIKGSFIQQRFTQRDLSKRTIVYIIDPATEALSDSLEFRVSDPLGNTG
PSHTLELKWSRVELAVSEYQACENQGTVSLDVLRKGNMAESSYITIKVRDVTATAGKDFT
LSPSSLIQFDPGVSKRSWRIEMTQDHLEEAEETFEVTLVSPEGTVVGSTSKALVKIKDSG
KGQCGSSRAPMGSSLGGKQVQSGPYPQHGSIHLETLPLAKGDQQMTWTRGDGMPQSVPAA
VPATPNMKLRAMANRKTIPPSSVHRNGTDTVFMYHGIMSVRLEDDKSLSRKGRKANIQVT
SRGRQQHAAAAPPVAPNLNPKPVPKTKSDHLLPRSMPEQPNKEPSPSSGPKPCVPELMGL
LHFNQSSGGLLRCNGISWKPWAPTDEMVSAQNCRKGWTYHSGNCYFLSTERKSSWSTAIR
ACRESHQANLVSIFSKADMDWLWDFSGRKPFWIGLNDRESRGRWEWVGGEPITYTNWWKS
PARGKRKGTRRCVLVWRRAKWQIRDCKTGRGHLYMCYIKT
NT seq
6603 nt
NT seq
+upstream
nt +downstream
nt
atgggtttacagagaggggcactgcgatgggcacttccctggctgctgttggtcatggct
ggagggtcacacggctccctggtgaagactaacctagggttgagggtgaagaggggccag
ccggcctacctgcaggagggggacctgcagttccacatccccccggtgaaggacgcctgc
aaggtggaggtggtgctcaacgagccaattacgcagagggtgggaacgctgacaccccag
gtgtttgactgccactacctggctgatgacgtaaagtatgtccacaatggctgcccgata
ctaaaagaagatactgtcaagcttcgactctacaggttcacagagacagagacctttaca
gaggtcttcttcctgcgtgtggagatcatggaacctgactgcaacatcatcaaactaggg
cccaagtccctggtggtgccagagttctacggcctgtccgacacgctggatggcaacgtg
gtgtccttccactatgagaggatgactagtcttgagtgtagcatccgtgtgaacacacac
gagacacacctcccgggtcatggtcagttggtcattggggagccagaccagctggaggcc
agaggggacgagccggagagcttcattcctctccggcagcagctagataacaaggccagg
gccatgtgtaagactgaggactgcctgaacggcctgaagctggcaaaggttatcaaagtg
ccctgtgatgagttcctggtgatgggccttaggtaccagcacatagacccaccgtctcca
gacgtagactacatcgccctccgactggacctcaccgacaccaggagcgggagcatatat
cagtcggagcgggcctggatacctgtccacatccctggcgctgttcccaaccagccgccc
aagccagccttcatgtccatgtttatcctggaagtggaccaattcatcctcacgcccctc
tccactgccaccctggacgcagaggacggagagacccccaaacagctgctggtgttcaac
atcaccaagccccccctagagggcttcatcacccacctgtcagaccacacgcgacccatc
ttctccttcacctgggtggacctcaacgacatgcttatcggttaccagccacccaactca
tcccacacccagcgtaggaactatgaggtggagtttgaggtacatgacttcttctttgag
aagagcgccccgatcatggtccacatgtcagttagaacagcagacaccaatgcacccagg
gtgtcatggaacatgggtcttagtcttcttgaaggtcagtctcgtccaatcacttgggat
cagctccagattgtggacaacgacaacttcaaggctgtacgcatcatcactgtcgacggc
ctccagcatggcagactaacactgagaggtggcaagggtttcatgttcaccatggccgac
atactcgcgggcgctgtgcgctaccatcacgacgacagcgacaccaccaaggacttcatc
atcttccgcatcaccgatgggcgccaccagacccggcacaagttccccatcaacatcctg
cccaaggatgacagcccaccattcctcatcaccaacacagtgctggagctctctgaaggc
cacacggccctgctgagaggatccatactgcaggcctcagacatggactcaagcgacgac
tacatcttgtttaacatcacccggccaccgcaagctggagagctcatgaagatccctggt
cctggactcactggttatcctgtcagccgtttcctgcagaaggacttgttccactctgtg
gtctactaccgccatctagggaatgaggtgtttgatgactccttcgaagtggtgctctcg
gacttccatgacccacccaacctttcagaacctcaggtcatagtggtgcacatcaaccct
gtgcctgaccagccacctaaagaggtccctggggtgactcgctgcctggtggtcaaagag
acagaggtggtccacctgaccaagaagcagcttcacttcatcgacctggagtcccctgac
agcgagctcacatacactgttaccactccgcccttctacagcaggtcttatgggggccat
gatgcagggaggctgttcctggttgacagcattgccaaattcaccaaggatgctgaagcc
ccagtgttaaggttattcacacagcatgcagtcaactacatgaaagtggcctacatgcct
cccatcctggacattgggccttacccgcagcacatccagttggtgctctccgtcaccaac
cagcagggaaccacagtcgctggcatctgcttcaacattaccgtggtgccagtggacaac
ctggccccagaggtgcacatgaaacctctgacagtggacgagggtggggagtgctgggtg
ggtccggaccacctgctgctggaagaccatgactctacagaggagagcctgagagtggag
ctgaagagagagcctcagcatggagctgttcagctggatggcttctccatgaaaccgggc
cagaacttcactgttcgcgacctgaaaagcctaaaagttagatatcatcacgacagctcg
gaaacagtgggcgatgccattgaattaatcgctaccgatgggattaacgcaatcaacttt
gttctggaagttaaggtgacactgatcaacgatgaggttccagttctcatgccaggtctg
aaacctgttctggactgtgcagagggacaggaagtcatcatcaccgctgagtacatttat
gccacagacgcagacagtgatgataacagtctgacctacatgattgcccgtcagccatac
catggcgtggtgcgcaaaaacgccattgtggtcgatcgcttcattcaggcagacattgtc
gcagggagtatcacctacgaacacacaggagcggagattggactagcccctcgacacgac
acaatcacgtttgtgatatccgacggccaggcggagaacactccgtcatgctgtaatgac
cgaggggacacattgaaaagaggcaggacacaagtccaggagagcctgcctctgtatgac
ctgaaggtcaccgtgttccctgtggacagtcagatgccttctattgcaacaggagatgtg
tttgtggtggatgaggggggtgtggcccctataactgtagcccacctcagtgcctcggat
gtggacactcccctggaggagctggtgatcagcctggtctctcctccccagtatggctac
attgagaatatcctgcccagtcctggatttgagaaaagcaacacaggcatcagcatcgcc
tccttctcttacagtgacatcatgaacgaacatgtgaactatgtccagtccagacaccag
aggattgagccaaccgctgaccagttcatgctctgcgtctctgacgggaaacacacctct
gcgcacgtccacttctacatcatcatcaaccccatcaatgacgaggtcccggagtttctc
gccagaaatatcacggtgcgagagggccatatgaaggagctggaccctgctgttataaac
gcggtggatctggacatccctaagaacaaactgctgttcagcgtggtccaggccccccag
catggcaccatcatgggccgaacgtatggcaacgacgtgcccgccaatggaagacccgtc
aacaggcacagggacgcagaggtgctggtccaggacttcaccatgcaggagttgaggaat
ggtatgtctctgatgtacatgcatgatgactctgagaacatggtggacagcttcaccatc
cagctgaacgatgggaaacaccagctccagaggcacgtgatggtcaacgtactccctgtc
aatgacgaggagcctcgagtcataaggaacaatggactggaggtggaggcaggcgaggct
aggctgatctccagtgctattctctttgctcaggacagcgacactacctctcaggagata
gtctacatgttggagagcgttcccactcagggactgctacaggttaaggtaggctctgac
tgggtgacccagtctgcggggatgaactgcacccaggagacagtggacatgaacctgctg
cgctacctccataccgggccactgggacacacacaggatttctttgtgttccacctgctg
gacgggaagaaccgttcccccgcgcagcacttccacatctccctcaaggacatggagaaa
ggagacattgccatttttgtgaagccggtgaagaccagccgcggtgagcgcgtggttctg
accacagacgtcctgctggcgacggacggtacagacaaaccggaggagctgttctacatc
gttacagtcccccccggcaacggacacatggagtacatcaaacaccctggggtggccatc
agcaccttcagccagatggacatcgctgccaacctggtgggctacgtccacgacaacaga
gccaccgcgtcgttggagacactacagttcgtcgtcagcaatggcaaggccacccgtaac
ggcaccctggagatttacgttgagaccaccgaccgcgtgctgccatcactgacctgtaac
agcggcttgagagtccctcaggactcctccgtggcggtgacccctgacgccctcgccttg
tcagaccccgacaccccacccagtgacctgctcttcttcctggcccagcctccgcagtac
ggcacactgcttcgtggcggtgtcccgctcgctgccgggggtaacttcacccagtgggac
ctgcaggagctggaggtgacttacaggcacgggggcggcccgtcgcagatcgaccgcttt
gccttcacggcctcagacactaccaacaggagtttcctgctggaggggagggtgcagacg
gaacctgttatctttaccattcagattgagcctttggacagctcggctcctgaggttgtg
cagctgcagtctctgtggaaggctgaagtcctgtctgacggtcgctatgggatctacctc
tcgtaccgggagctgagagcgcaggacggcaacaccaaggatgaagacctcaccttccac
atccacaggccaccatactttggctacctggagaatacgattaaaggcagctttatccag
cagcgtttcactcagagggacctgagcaaaaggactatcgtgtatatcatagacccagcg
acagaagccctgtcggacagcctggagttcagagtgtccgacccgctggggaacactggg
ccctcccacacgctggagctgaagtggtctcgtgtggagctggctgtgtctgagtaccag
gcatgtgagaaccagggcactgtctcactggacgtcctacggaaaggcaacatggccgag
tcctcgtacatcaccatcaaggtgagagatgtcacagcgactgctggaaaggatttcact
ctgagcccgtccagcctaatccagtttgatcctggcgtatccaaaaggagctggcgtatt
gaaatgacccaagatcacctggaggaggcagaggagacatttgaagtgacactggtgtcc
cctgagggaaccgtagtaggcagcacctccaaagcgctggttaaaatcaaggactctggg
aaaggacagtgtggatccagtcgggcccctatgggctccagtctgggggggaagcaggtt
cagtcagggccgtacccccaacatggctccattcatttggagacactaccccttgccaag
ggagaccagcagatgacctggacccggggcgatggtatgccccagtctgtgcccgctgct
gtgcccgccacgcccaatatgaaactcagagccatggccaacagaaagacgattccacca
tcatcagtccatcgtaatggaacagacactgtgttcatgtaccacgggatcatgtccgtg
cgcctggaggatgacaagtctctgtctaggaagggaaggaaggctaatattcaggtgacc
agcagagggcggcagcaacatgcagccgcagcaccaccagtggctcccaacctcaaccct
aaacctgtccctaagacgaagagtgaccacttgctcccacgttcaatgcctgagcagccc
aataaggagccttcacctagctctggccctaaaccctgtgtcccagagctgatggggctc
ctacactttaaccagagctcaggcgggctcctccgctgcaacgggatctcctggaagccc
tgggctcccactgatgagatggtcagtgctcagaattgtcgtaagggctggacctatcac
agtggcaactgctacttcctgagcaccgagcgcaagtcgtcgtggagcaccgccatcaga
gcatgcagggagagtcaccaagccaatctggtgagcattttttccaaggctgacatggac
tggctgtgggacttcagtggaaggaagccattctggataggtctaaacgacagggagagc
cgaggacgctgggagtgggtgggtggagaacccatcacctacaccaactggtggaagagc
ccggccagaggcaagaggaaggggaccaggaggtgtgttctggtgtggaggagggccaag
tggcagatcagagactgtaagacaggcaggggacatctctacatgtgttacatcaagacg
tga
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