Oncorhynchus tshawytscha (Chinook salmon): 112260013
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Entry
112260013 CDS
T05605
Name
(RefSeq) DENN domain-containing protein 4C isoform X1
KO
K20163
DENN domain-containing protein 4
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112260013
Membrane trafficking [BR:
otw04131
]
Protein recycling
Rab GTPases and associated proteins
Other Rab GTPase associated proteins
112260013
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DENN
uDENN
dDENN
PPR_2
DUF2464
PPR_3
PPR_long
PPR
CA109-like
Motif
Other DBs
NCBI-GeneID:
112260013
NCBI-ProteinID:
XP_024290558
LinkDB
All DBs
Position
LG10:complement(26600384..26687623)
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AA seq
1975 aa
AA seq
DB search
MIEDKGHRVTDYFVVAGLTDKSTPLEQDLSETKSSGPKAPITDLAVINKSAGETVPEGFT
CMESTYSGQQANLNHGSLKSHELFLCYKRDRDKPPLIDIGVLYEGKERLIQGCEVIQATP
YGRCANVNNSSATSQRIFITFRRAPPVQPQNSLAVTDICVIVTSKGETPPHTFCKVDKNL
NCGMWGSSVFLCYKKSVSASNSINYKAGLIFRYPEDDYESFPLSESVPLFCLPMGAKIEC
WAPNTRYPLPVFSTFVLTNSSGEKMYGAAIQFYEVYPIDLLSEKQKVQLGLLTTVEKKMI
PNRTVNTNKCICLLSRWPFFESFRKFLMFLYKLSVSGPHPLPIEKHISHFMHNVSFPSPQ
RPRILVQLSAHDTLMLAQPVCTPLPLSGADYSTLLMNLGSENCATLLHFVLLESKILLHS
LRPAVLTGVAEAVVAMIFPFQWQCPYIPLCPLSLAGVLNAPFPFIVGVDSRYFDLYDPPP
DVVCVDLDTNTIYLSDEKRHSNWKNLPKKPCKSLFNSLANLHHQLGIVRRTAQEGLAVEM
TPIEADFTWHKKMTSLEMEIQEALLRFMANILKGYRSYLKPITQAPSEKATSADSLYDLQ
GFLRSRERTHQKFYSQLTKTQIFIRFIEECTFVSDKDTGLAFFDDCIEKLFPSDKGNDKG
TKVEGEASEDTKLMELDESQKSEHTVFVMPPEPPATEEGSGPPAHYSYKSFPRLCMDLFD
RPREVIPALRSSTPGASLSSSPALLAKRTKQEIKLAYKMAKRFYSNPPLWAKCLFSHCYS
LWFICLPVGVRLAQSKSWAMQQAYNVLLKMRTSEVEVLDEVCYRVVMQLCGVYGQPVMAV
RVLVEMKKAGVHPNAITYGYYNKAVLEGPWPSRNRSGLFMWAKVRNVARALSQFKQAVHR
TPAMEGPTVITTACSGSDLGPSAGGLASSNGDQLSHGSADSSSEANGEDHTLFARSLIIA
DTADNHCSGGVQSDQGYGSKDELHQDLVDLVQSAALVIAVDQCSKSAAQHNGGDIAGSVD
SAVAVAEPPSPVKALPHVPSIVKLSTGASFDTAMKRGDAAPGKLFSLRSQSEDISLPVEG
KSAAPGGSGVAGPAVQVQRQKAFSERSCSFSAESRAGMLMEKHGVDHIVSRMGADARILA
AALSGGGTTPPPSKPLPSAAKALFKDLELESEEGRGPTLGKLSEEEGPVTDPTPLEEGLG
KEEKRMKGDRKEAGGEDEMGLKLEEEDEERDSGGRGSISLPTLEIKEVQVGADPLSLLVS
EHEELASVTSQELPQSLPAMVSRNLADEIEMYMSLRSPLGPKSCSMELHQEGQGGDPSPD
AAPVKQPQERRSSLPVPPVKHLGGSSGDTTPKRSPAAVTRSKTFAVKASRSPASSRGVVA
SPRSSPLTALVRSSQSGSLGSVINSISGMKMDTLLSGPKIDVLKSGMKQAGNLASKVWGA
VASAYSYSDDEDELGPGYRERDSFPAGLDESMLLGGGGSDSPTHRGPTQGLVSNGLTQSS
TSLGSSSGSSDTGRGPHSTHVTSGRPSRGPDSERSDQGSHHTSSSSIYQNCALEVLMSSC
SQCRSCECLVYDEEIMAGWTADDSNLNTTCPFCRTAFLPLLHVEFHDLRTTTAFYLNPSA
SGDSIHSTSQQATATGSTENKVGAAMDTPTPGLISFPESEDPGEAPASQTATHKSLIPEP
AQSDPLGLLEHQAGKRGTSLTRSNSVGGPLQSLVAQREPGHSVSTTSLPCSLTEMDGLGQ
KRPNPMPVSVPYLSPLVLRKELETLLENEGDQVIYTHKFLSQHPIIFWNLVFYFQRLDLP
SYLPGLILTSEHCNNGVQLHQTSLSQDSKQVYVQLLWDNINLHQEPGDPLYQSWRTLMEK
KGTLAPTDYQETRTLLNSIVRSIQTNDVYGPINLLLREVKRNPEVKRQRGIYREILFLAL
VALGRENIDVEAFDREYRLAFDELSPEQLKALHKIDWPPNTNVQWCLKCFGAPVI
NT seq
5928 nt
NT seq
+upstream
nt +downstream
nt
atgattgaggacaagggccaccgtgtgaccgactactttgtggtggccgggctgacggac
aagtccacgcccctggagcaggacctgtcggagaccaagtccagcgggcctaaggcgccc
attactgacctggccgtcatcaacaagtcggcgggagagactgttcccgagggcttcacc
tgcatggagagcacctacagtgggcagcaggccaacctcaaccacggcagccttaagagc
cacgagctgttcctctgctacaagagggaccgcgacaagcccccgctcatcgacatcggt
gtgttatacgaagggaaggagcgtctcattcagggctgtgaggtcattcaggccacgccg
tacggccggtgtgccaacgtcaacaacagctctgccacctcgcagcgcatcttcatcacc
ttccgccgcgcgccgcccgttcagccccagaactcactggccgtcaccgacatctgcgtc
atcgtcactagcaagggcgagacgccgccgcacaccttctgcaaggtggacaagaacctc
aactgtggcatgtggggctccagtgtttttctgtgctacaagaaatcagtgtccgcgtcc
aactccatcaattacaaagccggcctcatcttccgctacccagaggatgactatgagtcc
ttccccctgtctgagtctgtgcccctgttctgcctccccatgggggctaagatcgagtgc
tgggcccccaacacacgctaccctctgcctgtcttctccacctttgtgttaaccaactcc
tctggggaaaagatgtacggcgcagccatccagttctacgaggtctaccccatagatctc
ctcagtgagaagcagaaggtgcagctgggcctgctcaccaccgtggagaagaagatgatc
cccaaccggacggtcaacaccaacaagtgcatctgcctgctctcccgctggcccttcttc
gagtctttccgcaagttcctcatgttcctctacaagctgtccgtctcgggtccccacccg
ctgcccatcgaaaagcacatctcgcactttatgcacaacgtgtccttcccttcacctcag
aggcccagaatcttggtccaactctctgcacacgacaccttgatgctcgcacaacctgtg
tgtactcctcttcctctcagtggggcagactacagtacgttgctgatgaacctgggctct
gagaactgtgccacgctgctgcactttgtcctgctggagagtaagatcctgcttcactcc
ctgagacccgctgtactcaccggggtagcagaggccgtagtagcgatgatcttcccattc
cagtggcagtgcccgtacatccccctctgcccgctctccctggcgggggtcctcaatgcc
ccctttcccttcatcgtgggcgtggactcccgctactttgacctttatgaccccccgccg
gacgtggtctgtgtggacctggacaccaacactatttacctgtctgatgaaaagcgacac
agtaactggaaaaacctcccaaagaaaccctgcaagagcctgtttaactccctggccaac
ctgcaccaccagctgggcatcgtgcgtcggacagcccaggagggcttggcggtggagatg
acccccatcgaggcggacttcacctggcacaagaagatgacctccctggagatggagatc
caagaggccctgctgcgcttcatggccaacatcctgaagggctaccgctcttacctcaaa
cccatcacacaggccccctccgagaaggccacctccgcagactcactatacgacctacag
gggtttctgaggagcagggagcgcacccaccagaagttctactcccagctgaccaagact
cagatcttcatccgcttcattgaggagtgcacgttcgtcagcgacaaggatacgggcctg
gccttcttcgacgactgcattgagaagctatttccctccgataaaggcaacgacaaaggc
actaaggtggagggtgaggcctcagaggacaccaagcttatggaactagacgaatcacag
aagagcgagcacactgtcttcgtcatgcccccagaaccccccgccaccgaggaagggtcc
ggcccccctgcccactacagttataagagttttccacggttgtgtatggacctgtttgac
cgccccagggaggtgataccagcgctgaggagtagtacacctggggccagcctgtccagc
agccctgcactactggccaagaggaccaagcaggagatcaagctggcctacaagatggcc
aagcgcttctactccaaccctccgctgtgggccaagtgtctgttcagccactgctacagc
ctgtggttcatctgcctgcccgtgggggtgaggctggctcagtccaagagctgggccatg
caacaggcctacaacgtcctgctcaagatgaggacatctgaggtggaggtgctggatgag
gtgtgttaccgtgtagtgatgcagctgtgtggcgtgtacggtcagcctgtcatggccgtc
cgtgtcctggtggagatgaagaaggcaggggtgcaccctaacgctatcacctatggatac
tacaacaaggctgttctggaaggcccctggcccagtcggaaccgcagtgggctcttcatg
tgggccaaggtgcgcaacgtggcgcgtgctctctctcaattcaaacaggcagtccaccgg
acgcccgccatggaaggacccaccgtcatcacgacagcttgctcaggaagtgatttaggc
ccgtcagcgggcggcttggcgagcagcaacggcgaccagctgagccacgggagtgcagac
agctccagtgaggcaaacggagaggatcacaccctgttcgcacgcagcctcatcatagca
gacaccgcagacaaccactgcagcggaggagtacagtctgatcaaggctacggctctaaa
gatgagttgcaccaggacctagtggatttggttcaatcagcagcccttgtaatcgctgtg
gatcagtgcagcaagtccgcagcacagcacaacggtggggacatagctggctccgtggac
agtgcagtggctgtagcagagccccccagccctgtgaaagcactcccacatgtccctagc
atcgtcaaactgtccacaggggcgagttttgataccgccatgaagagaggagacgctgcc
cctgggaagctgttctctctgcgcagccagagcgaggacatctccctgccggttgagggt
aagtctgcagctccgggtggctccggggtggcggggcctgcggtccaggtccagcgccag
aaggccttctcggagcgcagctgcagcttcagtgccgagagccgtgccggcatgctgatg
gagaaacatggtgtggaccacatcgtcagccgcatgggcgctgatgcacggatcttggcg
gcggctctctctgggggcggcaccacccccccgccttcaaagccgcttcccagtgcggcc
aaagccctctttaaggacctggagttggagtctgaggaggggcggggtccgacgctgggg
aaactatcggaggaggaggggccagtaacggacccaacaccactggaggaggggttaggg
aaagaggagaagaggatgaaaggtgaccggaaggaggcaggaggggaggatgagatgggt
ctaaagttggaggaggaagatgaggaaagagattcaggggggaggggctctatttctctg
ccaaccttggagattaaggaggtgcaggtaggggcagaccccctctccctccttgtctcg
gagcacgaggagttagcctccgtaaccagtcaggagctgccgcaatccctgcctgccatg
gtgtcccgaaacctggcagacgagattgagatgtacatgagcctccggagcccgcttggc
cccaaatcctgtagcatggagctccaccaggagggccagggaggggacccttccccggat
gctgccccagtgaagcaacctcaagaacggaggtccagcctccccgtgccccctgtcaaa
cacctaggggggtcaagcggggacacgacgcctaaacgcagccccgcagcagtcacgcgc
tccaagaccttcgccgtgaaggcctccagaagccctgcctcttccaggggtgttgtggcc
agcccaaggtcgtcgccgctgactgcgctggtgaggtcgtcgcagagtggttcgctgggg
tcggtcatcaactccatctcgggcatgaagatggacaccctgctctcgggtcccaagata
gacgtgttgaaatcaggcatgaagcaggcagggaacctggccagcaaggtgtggggggct
gtggcctcagcctactcttactctgacgacgaggatgaactgggccccggctatagggaa
agggacagtttccctgccgggctggatgagtccatgctgttggggggtggaggaagtgac
agtcccacccacagagggcccacccaaggcctggtgtccaacggcctgacccagagcagc
accagcctgggcagcagcagtgggagcagtgacacagggagaggaccccactccacacac
gtgacttcaggaaggccaagcagaggtccagactctgagaggtcagaccaaggctcccac
cacaccagctcctctagtatctaccagaactgtgcccttgaggtgctgatgtccagctgc
tcccagtgtcgatcctgtgagtgtctggtatacgatgaggagatcatggcgggctggacg
gcagacgattccaacctcaacacaacctgtcccttctgccgcaccgccttcctgcccctg
ctccacgtcgagttccacgacctgcgcaccaccacagctttctacctgaaccccagcgca
tcaggagacagtatccacagcaccagccagcaggccacagctacaggctccaccgagaac
aaggtaggggctgcaatggacaccccgacccctggcctcatcagcttcccagaatctgag
gacccaggagaggccccggccagccagactgccacgcacaagagtttgataccggagccg
gctcaatcggatcccctgggcctgctggagcaccaggcagggaaaagggggacgtctctg
acacgcagcaacagtgtgggcgggcctctacagagcctggttgcccagagagaaccagga
cacagcgtgtccaccaccagcctgccctgcagcctgacagagatggatggcctgggacaa
aaacggcccaacccaatgcccgtgtctgtgccctacctcagccccctggtcctccgcaaa
gaactagagaccctactggagaatgagggagaccaagtcatctacacccacaaattcctg
agccagcaccccatcatattctggaacctggtgttttatttccaacgcctggacctgccc
agctacctgcctggcctcatcctcacctcggaacactgtaacaatggagtacagctccac
cagacatccctgtctcaagacagtaaacaggtgtatgttcagctgctgtgggacaacatc
aatctgcaccaggaacctggggatcccctctaccagagctggaggaccctgatggagaag
aagggcaccctggcccccacggactaccaggagacacggaccctcctcaacagcatcgtc
cgcagcatccagaccaacgacgtctatggccccatcaacctgcttctccgggaggtcaag
aggaacccagaggtcaaacgccaaaggggtatctatcgggagatcctcttcctggcgctg
gtggcattgggacgggagaacattgacgtcgaggcttttgaccgtgaataccgcctggcc
tttgatgagctgagcccagagcagctcaaggccctgcataagatcgactggccacccaac
accaacgtccagtggtgcctcaagtgcttcggtgctccagtcatctga
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