Oncorhynchus tshawytscha (Chinook salmon): 112260024
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Entry
112260024 CDS
T05605
Name
(RefSeq) voltage-dependent calcium channel subunit alpha-2/delta-4-like isoform X1
KO
K04861
voltage-dependent calcium channel alpha-2/delta-4
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04010
MAPK signaling pathway
otw04260
Cardiac muscle contraction
otw04261
Adrenergic signaling in cardiomyocytes
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
112260024
09150 Organismal Systems
09153 Circulatory system
04260 Cardiac muscle contraction
112260024
04261 Adrenergic signaling in cardiomyocytes
112260024
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
otw04040
]
112260024
Ion channels [BR:
otw04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
112260024
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
VGCC_alpha2
VWA_N
VWA_3
dCache_1
VWA
VWA_2
dCache_2
CobT_C
VWA_CoxE
zinc_ribbon_5
Motif
Other DBs
NCBI-GeneID:
112260024
NCBI-ProteinID:
XP_042155133
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Position
LG01:14670326..14761426
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AA seq
1180 aa
AA seq
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MGLRPRARSGGEINRLGPRGTPTGLRLGPRGTPTGLRLGPRGTPTGLRLGPRGTPTGLRL
GPRGTPTGLRLGPRGTPTGLRLGLWILCFSWFCFTAHAQMKIPPETVQFWANILSVQLRE
TTTRYSGANILQKKLKDVESIIKIVDIDGRDQVRDFAEDMERMLGSKMKSVKRLAESAED
ADLYHDFNKTLEFDYYNSMLVNTADEDGNFIELGGEFPLEKNKHFNNLPVNTQQSDVQVP
TNVYNKDAYILNGIYWSEALNDVFMNNFQKDPTLTWQYFGSSSGFFRIYPGIKWTPDSNG
VAAFDCRNRNWYIQAATSPKDIIIVVDISGSMKGLKMTIAKHTINTILDTLGENDFVNVI
AYTDYVRYVEPCFKGTLVQADLDNREHFKVLVDELHVKGEGKVAKAMKESFKILNEAATK
GQGSLCNQAIMLITDGAMEDFKDVFEEFNWPDRRVRLFTYLIGREMTFADNTKWIACNNK
GYYTHISTLADVQENVMEYLHVLSRPMVINHNHDIIWTEAYMDTVLPNTKELFATKAQSL
LLMTTVAMPVFSKKKETLSHGILLGVVGSDIPLLEVMKLAPRYRLGPHGYAFLITNNGYI
LAHPDLRPLYKEGKTLKPKPNYNSVDLAEVEWEDIDEILRTAMVKGEMGTLSLNVRASVD
KAKRPLFLTNDYFYTTINDTPFSFGMVLTRGHGQLMFMGTVSVEEGLHDLTSPDLSISNE
WTYCETDIDPHHRKYSQLQAVIRYLQGKEPDLECDEVLLQQTLFDAVVTAPLESYWQAIM
LNASGMEMGVETAFLGTRSGLIRLTRYTGIETRVAKKFLTPADKDNLFTVDHFPLWYRLA
MENPPGRFIYYIPVEDKDNRDKTGVSKYVIATTAVTVSSGGKMAMAGAIGVQMSLEMLEK
RLWTIAFQPADTDCTDVEGVCPLSCQSTDVNCFLVDSNGFIIVSKERSEVGRFFGEVDGS
VMAALIKSGMYKKVSLYDYQGMCRSGHSHSSSARPLLSPFYGLAAVIKWFFSHMLMFLLE
FNFCGLWHSDYVVDAKAGYHTSHKAKRTDALQPCDTEYPGFMLDNSIKETNSLLKCGRCQ
KMFVVQAVPDSNLVLMVVQADCDCSRQYSSITLEPKEVKYNASVKCNRMKSQKVRRRPKS
CHAYHPKENAKDCGGASEISLSVALFLASLATSLALRRWT
NT seq
3543 nt
NT seq
+upstream
nt +downstream
nt
atgggactacggcccagagccagatcaggtggagaaataaacaggctgggacccagagga
acccccacagggttgaggctgggacccagaggaacccccacagggctgaggctgggaccc
agaggaacccccacagggctgaggctgggacccagaggaacccccacagggttgaggctg
ggacccagaggtacccccacagggctgaggctgggacccagaggaacccccacagggctg
aggctgggcctgtggatcctgtgtttcagctggttctgcttcactgctcacgctcagatg
aagataccgcctgagacggtccagttttgggctaatatcctttcagtgcaactacgcgag
actaccacaagatactctggagctaacattctacaaaagaaactcaaagatgtggaatcc
attattaagatagtggacatcgatgggagagatcaagtgagggactttgcagaggacatg
gagagaatgctggggtccaagatgaagtcagttaagaggttggctgagtctgcggaggat
gcagatttgtaccacgacttcaacaaaacgctagagtttgactactataactccatgctg
gtgaacacagcagatgaagatggtaacttcatagagctgggtggtgagtttcctctggag
aagaataagcatttcaacaacctgccagtcaacacacagcagagtgacgtacaggttcca
actaatgtctacaacaaagatgcctacatcctcaatggaatctactggtcggaggctctg
aatgatgtgttcatgaacaacttccagaaagaccccaccctcacctggcagtactttggc
agctcctcgggattcttcagaatctaccctggtatcaaatggactccagattcgaatggt
gtggctgcgtttgattgcaggaaccgtaactggtatatccaggctgccacctcaccaaag
gacattattatcgtggtggacatcagtggcagtatgaagggtctgaagatgaccatcgcc
aagcacaccatcaacaccatcctggacacactgggggagaacgactttgtcaacgtcatc
gcttacactgactacgtgcgctacgtagagccatgcttcaaaggcaccctggtgcaggct
gacttggacaaccgcgagcattttaaggtgctagtggatgagcttcacgtgaagggagag
ggaaaagttgcaaaggccatgaaagaatccttcaaaatcctgaatgaggctgcgaccaag
ggccagggcagcctgtgtaaccaggccatcatgctgatcacagatggagccatggaggat
ttcaaagacgtgtttgaagagttcaactggcctgatcgcagggtgcgcctcttcacttac
cttattggcagagagatgacctttgcggacaacaccaagtggatcgcctgcaacaacaag
ggttactacacacacatctccactctggctgacgtgcaggagaatgtcatggagtacctt
cacgtcctgagccgaccaatggtcatcaatcacaatcatgacatcatctggaccgaggct
tacatggacactgtgctacccaatacgaaggagctcttcgccacaaaggctcaaagttta
cttctcatgaccacagtggcaatgcctgtcttcagcaagaagaaagagacgctgagccat
gggatcctgctgggggtggtgggttctgacatccccctgttggaggtaatgaagctggct
cccagatataggctgggcccccatggttacgctttcctcatcaccaacaacgggtacatc
ctggcacaccctgacctacgacctctgtacaaagaaggtaagacgctgaagcccaagcct
aactacaacagtgtggacctggctgaggtggagtgggaggacatagatgagatactaagg
acagccatggtgaaaggggagatgggcactctgtctttaaacgtgagagcatcagtggac
aaagcgaaaaggcctttgttcttaacaaatgactatttctacacaaccatcaacgacacc
ccattcagttttggtatggttctgacaaggggtcacggacagctgatgttcatggggaca
gtctctgtggaagagggcctgcatgacctgacgtcccctgatctatccatatccaatgag
tggacgtattgtgagacagacattgatcctcaccaccgcaaatactctcagcttcaggct
gtcattcgctacctgcaggggaaggagcctgacctggagtgtgacgaggtgctgctgcag
cagactctgtttgatgccgtagtgacagcccccttagaatcctactggcaggccatcatg
ctcaatgcatctgggatggagatgggtgtggagacagcctttctgggaacccgctctggc
cttatccggcttaccagatacactggcatagagaccagggtcgccaaaaagttcttgact
ccagctgataaggacaacctgtttaccgtggaccatttccccctgtggtatcgcctggcc
atggagaacccccctggacgcttcatctactacatccctgtggaggacaaagacaacaga
gacaagacaggggtgtcaaagtatgtcatagccaccacagctgtgactgtgtcatcggga
ggcaagatggccatggctggagccattggggtgcagatgtccttggagatgctggagaag
aggctatggaccattgcctttcagcccgctgacacagactgtactgacgtggaaggtgtc
tgccctctcagctgccagagcactgatgtcaactgtttccttgtggacagcaacggcttc
atcatagtctcgaaagagaggtcagaggtcggacgtttctttggggaagtggacgggtct
gtgatggcagcgttgattaagtcgggcatgtacaagaaggtgtcgttgtatgactaccag
ggaatgtgcagatcaggacacagtcattccagtagtgctcgccctctgctcagccctttc
tatggccttgctgcagtgattaaatggttcttctctcacatgttgatgttcttactggag
ttcaacttctgtgggctgtggcactcggattacgttgtagacgccaaggctggctaccat
acatcccataaagcaaagaggacggacgcattgcagccctgtgacacagagtaccctggc
ttcatgttagacaactccatcaaagagaccaacagcctcctcaaatgtggacgctgtcag
aagatgtttgtggtgcaggcagtccctgacagtaacctggtgttgatggtggttcaggcg
gactgtgactgctcccggcagtactcctccatcaccctggagcccaaagaggtcaaatac
aacgcatcagtcaagtgtaacaggatgaaatctcagaaagtccggcggcgcccaaagtcc
tgccatgcctaccatcctaaggaaaatgccaaggactgtggaggagcgtcagagatcagc
ctatcggtggcgctcttcttggcttctctggctacctcattggccctgcgcagatggact
taa
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