Oncorhynchus tshawytscha (Chinook salmon): 112260108
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Entry
112260108 CDS
T05605
Symbol
pcdh7b
Name
(RefSeq) protocadherin-7b isoform X1
KO
K16498
protocadherin delta 1
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
112260108 (pcdh7b)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
otw01009
]
112260108 (pcdh7b)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
otw04515
]
112260108 (pcdh7b)
Protein phosphatases and associated proteins [BR:
otw01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
112260108 (pcdh7b)
Cell adhesion molecules [BR:
otw04515
]
Cadherins
Protocadherins
112260108 (pcdh7b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_CELSR2_9th
Cadherin_2
Mid2
TMEM154
KIAA1549
Adeno_E3_CR2
Motif
Other DBs
NCBI-GeneID:
112260108
NCBI-ProteinID:
XP_024290723
UniProt:
A0AAZ3RDS9
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All DBs
Position
LG10:32168777..32376472
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AA seq
1258 aa
AA seq
DB search
MRTTGAVDYICYSILILQLLNQPDAKQVLRYRLAEEGPADVRVGNVAKDLGIVAGSGEVT
FTLESGSDFFKIDNITGELTTNERRIDREKLQQCQMIFDENECFIDFEVSVIGPAQSWVD
LFEGKVIILDINDNTPSFPSPVLTLSVEENRPIGTLYLLPTATDRDFGRNGIERYELIQD
SGESSRRLGSNSGGRGVDSRRFDEGAARSSVFELQVADTTDGEKQPQLIIKGALDREQRD
SYELTLRVRDGGDPPRSSQAILRVMITDVNDNSPRFEKAVYEADLPENSSPGAPILQLKA
ADADVGVNGQIEYVFGAATESVRRLLRLDEGSGWLSVLHRIDREEVSQLRFTVMARDRGQ
PPKMDKATVVLNIKDENDNVPAIEIRKIGRIFLKDGVANVAEDVVVDTPIALVQVSDRDQ
GENGIVTCTVVGDVPFQLKPASEIEGEMNKKKYFLHTSAPLDYEATQEYNVVIVAVDSGS
PSLASNNSLIVKVGDFNDNPPIFSQNVVEVSFLENNAPGERVTTVQAIDADSGKNAEIAY
SLVSSVNGIFSIDADSGDIRVNTILDREQTERYEFKVIAKDKGMPILQGSATVVVLVADK
NDNEPKFMQDVFTFYVKENLTPNSPVGMVTVIDADKGQNAEMSLFIEEEEDIFSIENDTG
TIFSTMSFDREQKTSYTFRVKAVDGGDPPRSATATVSLFVMDENDNPPTVTFPINSTYTL
LPPSSNVRTVVRTVIATDPDTGINADLNYSIIGGNPFKLFEIDGGSGVISLVGKLEQKHY
GLHRLVVQVNDSGQPSQSTTTLVHVYVNETLSNSTIVEAQVAKSLGTPLNTNIAGDPNYD
LGKQRLSIVIGVVSGIMTVILIILIVVMARYCRPKNKNGYEAGKKDHEDFFTPQQHDKGK
KPKKDKKNKKSKQPLYSSIVTIEASKPNGQRYDGVNEKLSDSPGMGRYRSVNGGPGSPDL
ARHYKSSSPLPTVQLHPQSPTAGKKHQAVQDLPPANTFVGTGDNISLGSDHCSEYSSQTI
NKYNKQPFRRVTFSVVSQPQDPHQQGSLQSCYDSGLEESETPSSKGSSGGPRLGALPLPE
DSYERTTPDGSVGEAEHMENDTRPLPDVAMTGKCTRECDEYGHSDSCWMPVRTSPERRPK
TTTTQQPKLSTFMTGGGSGSSPPEQQQQHPGSQEALAAMSNGDPSSHVMLGNDRNRNLLN
KKTASSSSSYEGFGSPSFSPPGVEERVVGHPIEEIPLAPTGEYKPSPCGTLTRREVYL
NT seq
3777 nt
NT seq
+upstream
nt +downstream
nt
atgaggactactggcgcagtggactatatatgctacagtatactcatcctgcagctgctg
aatcagcccgatgccaagcaagtgttgcgatatcgcttggctgaggagggacccgccgat
gtcagggtagggaacgtagccaaagacctcggaatcgtcgccgggtctggtgaggttacg
tttaccctcgagtccggctctgattttttcaaaatagataatataacaggcgagctgacc
actaatgaacggcggatagaccgtgaaaaattacagcagtgccaaatgatatttgatgaa
aacgaatgtttcatagattttgaagtgtcagtaattggaccggctcagagctgggttgac
ctgttcgaggggaaagtcattattttagacataaatgacaacaccccgtctttcccctct
cctgttctgacactgtcagtggaagagaacagaccgattggcactctctatctcctgccc
actgccaccgacagagattttggcaggaacggaattgagagatatgagcttattcaggac
agcggggagagctccaggcgcctgggttcgaactcagggggacgcggagtggacagcagg
agatttgatgagggtgcagccaggagcagcgtctttgaactgcaagttgctgacacaact
gatggggaaaaacagccgcagctcatcattaaaggagcgctggacagggagcagagggac
tcttatgagctcaccctgcgtgttagggatgggggcgaccccccacgctcctcccaggcc
atcctgagggtgatgatcactgatgtgaatgacaacagcccccgctttgagaaggctgtg
tatgaggctgacctgccagagaacagctcccctggtgcccccatcctgcagctgaaagca
gctgacgcagacgttggggtgaacggtcagattgagtatgtatttggtgcggccacagag
tcagtgcgtaggctgctgaggctggacgagggctcggggtggcttagcgtgctccatcgt
attgaccgcgaggaggtgagccagctgcgcttcacggtaatggcaagggatcgaggtcag
ccacccaaaatggacaaggcaaccgtggtcctcaacatcaaagacgagaacgacaacgtg
cctgctatcgagattcgtaagatcggacgcattttcttgaaagatggtgtggccaatgtg
gcagaggatgtagtggtggacacgcctatagctttagtccaggtgtcagaccgcgaccag
ggcgagaacggcatcgtgacctgcactgtggtgggtgacgtgcccttccagctcaaaccg
gccagtgagattgagggtgagatgaataagaagaaatactttctccatacatcagccccg
ctggactatgaggccacacaggagtacaacgtggtcatcgtggctgtggactcaggaagc
cctagcctggccagtaataactcgcttatcgtgaaggtgggagacttcaacgacaaccca
cccatctttagccagaacgtggtggaggtgtcctttctggaaaacaatgccccaggcgag
agggtgaccacagtgcaggcaatcgatgctgacagtggcaagaatgcagaaatcgcctac
tccctcgtctcctctgtaaatgggatattctccattgatgcagacagtggtgacatcaga
gtaaacaccattctggacagggagcaaacagagaggtatgagttcaaagtgatagctaaa
gataagggcatgcccatacttcaggggtcagccactgtggtggtcctggtggcagacaag
aacgacaatgagccaaagttcatgcaggacgtgttcaccttctacgtcaaagagaaccta
acacccaacagccctgttggcatggtgaccgtcattgacgctgacaagggccagaacgct
gaaatgagcctcttcatcgaggaagaggaggatatcttctccattgagaatgacacagga
accattttctccaccatgtcatttgaccgcgagcagaagacttcatacacgtttagggtc
aaggctgtggacggtggagacccacccagatccgccacagccaccgtgtcacttttcgtg
atggacgagaacgacaacccgccaaccgtcaccttccccatcaacagcacttacaccctc
ctgcccccctccagcaacgtcaggactgtagtacgaaccgtcatagccactgatccggac
acagggatcaacgctgacctgaactacagcatcatcggtggaaaccccttcaaactgttt
gagattgacggaggtagtggggttatctcactggtggggaagctggagcagaaacactat
ggcctccatcgactcgtggttcaggtgaacgacagcgggcagccctcccagagcaccact
acccttgtgcatgtctatgtcaatgagaccctctccaactccaccatcgtagaggcccag
gtggccaagagcctgggtacgccgctcaataccaacatcgctggggaccccaactacgac
ctgggtaagcagcggctgagcatcgtcatcggggtggtctcgggcatcatgacggtcatt
ctcatcattctcatcgtcgtcatggcccgttactgccgccccaagaacaagaatggctat
gaggcaggcaagaaggaccatgaggacttcttcacccctcagcagcatgacaagggcaaa
aagcctaagaaggacaagaagaataagaagtccaaacagccactgtatagcagcatcgtt
accattgaggcctccaagcccaacggccagcgctacgatggtgtcaacgagaagctgtcg
gacagccctgggatgggccggtaccggtctgttaacggagggcccgggagcccggatctg
gcccggcactacaagtccagctcgccactgcccacggtccagctccacccccagtcaccc
acggccgggaaaaagcatcaggctgttcaggacctgccccctgccaacaccttcgttggc
accggagataacatttcccttggatctgaccactgctctgagtatagcagtcaaaccatc
aacaagtacaacaaacagccgttccgccgagtgaccttctcggtggtgagccagccccaa
gacccccaccagcagggatcgctgcagagctgctacgacagcgggctggaggagtcggag
acgcccagcagcaagggctcttcggggggcccaaggctgggtgcgctgcccctgcccgag
gacagctacgagaggaccacgccggatggcagtgtcggtgaggcagagcatatggaaaat
gacacccggcccttgcccgacgtagccatgacaggcaagtgcacccgggaatgcgatgaa
tacggccactctgactcctgctggatgcctgtgcgcacgtcgcctgagcgccggcccaag
acaaccacaacccaacaaccaaagctttccaccttcatgactggcggtggcagcggcagc
agccctcccgagcagcagcagcagcatcctggcagccaggaagccctggccgccatgtcc
aatggagacccctcctcccacgtgatgctgggcaatgaccgcaaccgcaacctgctcaac
aagaagacagcctcctcctcctcctcctacgagggctttggctcgcccagttttagccca
ccgggggttgaagagagggtggtgggtcaccccattgaggagatccctctggcccccacc
ggggagtacaagccctcaccctgcggcacgctcactcgccgggaggtctacctgtga
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