Oncorhynchus tshawytscha (Chinook salmon): 112260125
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Entry
112260125 CDS
T05605
Name
(RefSeq) collagen alpha-1(XXV) chain isoform X5
KO
K24356
collagen type XXV alpha
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
otw00536
]
112260125
Glycosaminoglycan binding proteins [BR:
otw00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
112260125
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
112260125
NCBI-ProteinID:
XP_024290753
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Position
LG10:complement(34359750..34697545)
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AA seq
652 aa
AA seq
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MERETTSLKQQYCCTTVMNVISSLFSVASLAFCILLSVQTSAIADRVLDLETGHGEQFFH
RVPSFSVDQFNSLIQERVDELLSQRSYENLSKVRIARQVSHTPDCNCPPGPPGKRGRRGR
NGEPGPPGPPGLQGDKGDQGDQGPRMVFPKINHGFLSADQQLIKRRLIKGDQGSAGPPGP
PGPPGPPGPRGPPGDTGKDGPRGVPGLPGDPGTPGELGLIGPEGPPGQKGSLGPPGIPGV
DGLKGEMGERGEKGDMGEDGQKGEVGEKGDAGSSAAGIKGEPGESGRGGSKGEPGLPGLP
GLPGIKGEPGFLGPQGEPGLPGLPGTKGERGELGPPGKGERGEPGQAGQKGGPGEAGNPG
PRGSKGETGDKGDLGSMGPWGPPGQKGDQGATEIIDYNGNIQEALQKITTITVTGPPGPP
GLSGPAGIKGDQGMPGLPGLDGERGFKGSKGDMGIPGTSGDKGTVGLPGLPGVNGLKGDK
GDSGMPGPEGPSIIGQPGAPGPHGPPGPMGPHGFPGPKGEAGNHGLKGVRGESGHKGDRG
PLGLPGASGLDSKPGIRGMDGPVGSSGPAGPKGDRGERGAAGELGPRGPYGLPGAAGTPG
LDGEKGKKGKKGPKGEKGEQGAPGLDAPCPLGPDGLPMPGCWQKGVTPWLVA
NT seq
1959 nt
NT seq
+upstream
nt +downstream
nt
atggagagagaaacgacatctttgaagcagcaatattgctgcacaactgttatgaacgtt
atctcgtctttattctctgtagcgtcccttgccttttgcatattattaagtgtacaaaca
tcagcgatcgcggacagagtcctggatttggaaactggacatggcgagcaattctttcac
agggtccccagtttttctgtggatcagtttaattcattgattcaagagagagtggatgag
ctcctgtcacagcgctcctatgaaaatttatcgaaggtacggattgcccgacaagttagc
catactcctgattgcaactgtcccccaggcccgccaggaaagcggggaagaagaggccgg
aatggcgaacctggacctcctggtcctcctggtcttcagggtgacaagggggatcaaggc
gaccaaggaccgcggatggtcttccctaagatcaatcatggctttctttctgctgaccag
cagctcataaagcggcggcttattaagggagatcagggttcggcaggtccaccagggcct
cctggacccccaggtccccctggcccccgagggccaccaggggacacaggcaaggatggg
ccccggggagtgccaggtctgccgggagatcccgggaccccaggagagctaggactaata
ggacctgaggggccaccaggacaaaagggttccctcgggcctcctggcatcccaggtgtt
gatgggctgaagggtgaaatgggagagcgaggtgaaaagggtgacatgggagaagatggg
caaaaaggtgaagtcggggagaagggtgatgcaggctcctctgctgcaggcattaagggt
gaaccaggagagtcaggacgtgggggatcaaagggagagccaggacttccagggctgcct
ggacttcccgggattaagggtgagcctggattcctaggacctcagggagaaccagggctc
ccaggactaccgggaaccaagggcgagcgaggggaacttggcccaccaggcaagggagag
cggggcgagcctggacaggccggtcaaaagggggggccaggagaggcagggaacccaggc
cctagaggttcaaagggagaaacaggagacaagggagacctgggctctatgggaccatgg
ggaccccctgggcagaaaggtgaccaaggagccactgaaatcattgattacaacgggaac
atccaagaagctttacagaagattaccactattacagtgacgggtccccctgggcctcct
ggactatcaggaccagcgggaatcaagggagatcaaggcatgcctggcctccctggactg
gacggtgaaaggggtttcaaaggttccaaaggagacatgggaatccctggcacatctgga
gataaaggaactgttggtttacctggtttaccaggtgtcaatggattgaaaggagataag
ggtgattctggaatgcctggtcccgaagggccctcaattattggccaacctggagcacct
gggccccatggccccccaggccccatgggaccccatggcttccctggaccaaagggggag
gctgggaatcatggtctgaagggagtacgcggggagtcagggcacaagggagacagagga
cccctgggcctccccggagcctccggcttggacagcaagcctggaattaggggtatggac
gggcctgttggttcctccggtccagccgggccaaagggggacagaggtgagagaggagct
gcaggtgaactcgggccaaggggaccttatggacttcctggagcggctggaacacctggc
cttgatggggagaagggaaagaaggggaaaaaagggcctaagggggagaaaggagaacag
ggtgcccctggattagatgcaccctgcccattgggcccagacggactaccaatgcctggt
tgttggcaaaagggagtcacgccttggctggtggcttga
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