Oncorhynchus tshawytscha (Chinook salmon): 112260235
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Entry
112260235 CDS
T05605
Name
(RefSeq) collagen alpha-3(IV) chain-like
KO
K06237
collagen type IV alpha
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04510
Focal adhesion
otw04512
ECM-receptor interaction
otw04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
112260235
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
112260235
09142 Cell motility
04820 Cytoskeleton in muscle cells
112260235
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
otw04147
]
112260235
00536 Glycosaminoglycan binding proteins [BR:
otw00536
]
112260235
Exosome [BR:
otw04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
112260235
Glycosaminoglycan binding proteins [BR:
otw00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
112260235
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
112260235
NCBI-ProteinID:
XP_024290943
LinkDB
All DBs
Position
LG10:42362003..42421156
Genome browser
AA seq
1658 aa
AA seq
DB search
MRTALLCFVFLGMMLLGIEAKDCACTGKSRCHCEGVKGNKGEKGYSGETGLPGSVGYPGS
EGHPGSVGPKGDVGSHGPPGQYGNRGPEGREGFAGTSGLPGIPGLQGPMGQQGASGCNGT
EGKRGSTGPPGLHSSDGLRGSPGAPGPKGEPQTIGSGPPGPRGRDGDQGVSGSPGPTGPP
GEAGLRGVEGLIGLHGAPGLKGQEGRSSSIPGPRGLKGHQGPPGVPGPKGIKLYAHAPFD
MKGEMGELGEKGCKGSLGYAGHIHFKGAKGDQGDVGTEGRPGKDGNRGPAGYKGRNGNHG
SAGPDGIPGPWGQKGGQGQDGDPGEVTMIGEAVFGSGGAKGQQGLAGPPGPTGVTGPPGS
TGFQGPPGSPAPNYGDDPYNRGAKGRSGPKGDKGDQGPIIDGKPGREGFPGTTGESGDPG
PPGPSGDSGNLKGFIGPPGEKGAKGLTGEQGYSGQYGLKGQKGEVCMLCTGKGSGEPGPP
GPPGQPGFPGFNAGPGPKGEPGFKGPSGPPGQPGPHGPSGVPGPLGMKGNPGSHNHRGIK
GEKGSPGLAGRSGKDGNHGNTGFPGRKGQRGPKGDPYYGPTGLKGDVGVPGPPGPQGYQG
PDGLPGPVGIGPLGHPGSKGNSGVPGLSGIAGYPGQKGEPSKRVAYQGVPGPPGQLGLPG
LQGPPGPRGNVGLHGLHGYQGEKGDSGGFSTLGGRGPTGTKGDKGHPGPPGTSGSGYPGR
PGTLGIPGVPGSKGDVGFGAPAPVGPKGFQGGVGARGPPGDPGLLGRPGNPGPIGLNGSP
GPKGSKGGVGSQGPPGYAHTDCTGATTGPPGPPGPAGRPGPPGLNGPTGALGAPGAPGFG
RSGPAGDPGPPGVSGPGVQGLDGQKGGRGRDGLTGTLGPRGDPGLDGRSGSGPDGFPGSG
GQPGPRGSDGRDGDKGHRGVPGPVGDKGITGPSGPAPITDLYGLPGDAGKLGLLGFPGAR
GDPGYPGPKGIDGRDGDPGQHGPIGPPGDRGADDLYSVGGPGPSGPRGDIGSMGLPGPHG
IKGVLGYHGGLGQDGRPGPYGPKGTKGEPSYAQPGRIGPPGQKGEPALCNSHGSKGERGS
PGCAGRPGSQGPTGAKGDPGHHGHHGPLGPAGPPGTDGPPGPPGPTPSYGAPGQPGLPGP
PGLCGPKGNQGRDGIPGPAGQKGETLIVGSTPGLRGENGQPGPKGDVGFPGPTVLGPPGV
TGDQGIEGPQGPRGEPGHRAVCLKGLKGDTGPHGRPGSPGRRGPRGQPGSGGYGYNGDRG
DTGSPGGRGFDGPRGDPGLPGPLGPRAIPGPPGPIGDPGHPGPPGFPGETGDHSYNPGTK
GPNGAKGRPGPPGRPGLDVSGQVRFYQGDPGPLGHPGNQGLPGPSGLPGRPGFAGPTGPK
GQHGHSPPGLPGFPGRKGDKGSPGRTGPVGYQGSPGQKGSRGPWGSSTAGLADSFLLARH
SQTIRVPDCPRGTTLIYSGYSLLFINGNERAHGQDLGSMGSCLPRFSTMPFLFCDTDNTC
RYAARNDYSYWLSTEKPMPRSMDLIRGDEIGSYISRCSVCEGSSNAIAIHSQTTQTPDCP
RDWESLWPGYSFVMQTGAGAEGSGQPLVSPGSCLEHFRQVPFIECHGRGTCNYFPDSYSY
WLASLDPNRMFSKPVPQTVKGRLLENVISRCRVCRKPY
NT seq
4977 nt
NT seq
+upstream
nt +downstream
nt
atgaggacagcattgctttgtttcgtgttcctgggaatgatgttgctgggaattgaggcg
aaggattgtgcgtgtactgggaagtcgaggtgtcactgtgaaggagtcaaaggtaataag
ggagaaaagggttactcaggagagactggtctacctgggtcggttggctatccgggctca
gagggtcaccctggatcagtgggaccaaagggggacgtgggctctcatggacctccagga
caatatggcaatcggggacctgagggtagagaaggatttgctgggacatcaggtctacca
ggcatcccaggccttcaaggaccaatgggccaacaaggtgcctcaggatgcaatggaaca
gaggggaagaggggttcaactggtccacctggtctccacagcagtgatggattaagaggt
tcacctggagcacctggaccaaagggtgaacctcaaacaattggaagtgggccacctgga
cctagaggaagagacggtgaccagggtgtctctgggtcaccaggaccgactggaccacca
ggggaagctggacttcgtggggttgagggattgataggcctacatggagcaccaggatta
aagggtcaagagggacgcagctctagtatccctggccctcgtggtctaaagggacaccaa
gggccccctggagtcccgggaccgaaagggatcaagctatacgcccacgctcccttcgat
atgaagggagagatgggtgaactgggtgagaagggctgtaagggttcactaggttatgct
ggccacatccattttaaaggagcaaaaggggaccaaggggacgttggtactgagggaagg
ccagggaaggatgggaatcgaggacccgctggatataaggggagaaatgggaatcacggt
tcagcaggtcctgatggaatccctggaccatggggacagaaaggtggtcagggtcaagat
ggtgaccccggggaggtgaccatgattggcgaggccgtgtttggctccgggggtgccaaa
ggacaacaagggttggctggccctccaggtcccactggagttactggtcccccaggtagc
accggtttccaggggcctcctggatctccagctcctaactatggagatgatccctacaat
cgtggagcgaagggtcgcagtggacctaaaggggataaaggagaccaaggacccatcatc
gacggcaagccaggcagagagggctttccaggaacaactggggaaagtggagaccctgga
cccccaggaccatctggagactcaggaaatcttaagggctttataggacctccaggggaa
aagggagccaagggcttgacaggcgaacaagggtacagtggccaatatggtttaaaaggt
cagaaaggagaggtctgtatgttgtgtacaggaaaagggtctggagagccgggaccccca
ggaccccccggtcagcctggattcccaggctttaatgcaggaccagggcccaaaggagag
ccaggattcaaaggcccatcaggaccacctggtcaaccgggtccccatggcccctcaggt
gttccagggcccctggggatgaagggaaatccaggttcccacaaccaccgcgggataaag
ggagagaaaggatccccaggactagctggcagatcggggaaggatggaaatcacgggaac
actggcttccctggacgcaagggccaacgaggccccaagggtgatccgtactatgggccg
acgggtctgaagggagatgttggtgtcccaggccctcccggaccacagggataccaagga
ccagatgggttgccaggtccagtaggcataggacctcttggccacccaggatctaaaggc
aatagtggggtaccaggtctatctggcatagctggctacccaggtcagaaaggtgagccc
agcaaaagagtggcttaccagggagtcccaggcccaccaggacagctgggtctgcctggg
ttacagggccccccaggtcctcgtggtaatgttggtttacatggactacatggttaccag
ggggagaaaggagacagtggtggattctccaccctgggaggacgaggacccactggaacg
aaaggtgacaaagggcacccgggacccccaggtacctctggaagcggctaccctggacga
cccggcacactgggaatccctggggttccagggtcaaagggtgatgttgggtttggggcc
ccagctccagtcggccctaaaggtttccaaggtggtgttggggcccggggacctccagga
gacccagggctactgggacgaccagggaatccaggaccaataggcctcaatgggtcacca
ggccccaaaggaagtaaaggtggggtaggttcccaaggaccacctggttacgcacatact
gactgtacaggagccacaaccggaccacctggtccgccaggaccagcaggcagacccgga
cctccaggtttaaatggaccgacgggtgcgcttggggcccctggcgctccaggttttgga
cgttcaggcccggctggtgaccctgggccccctggggtctccggacccggagtgcaggga
ctagatggacagaagggaggcagagggagagatgggttaacaggcacactaggtcctcga
ggtgatcctgggctggatggaagatctggatcgggccctgacggattccctggatctgga
ggacaacccggccccagagggtcggatggccgtgatggggataaaggccatagaggtgta
ccaggccctgtgggggacaaaggaatcacaggcccttctggaccagcacctatcacagac
ttatatgggctcccaggggacgctggaaagcttggtctgcttggttttcctggtgcaaga
ggagaccctggatatcctggaccaaaaggcattgatgggagggatggtgacccaggacaa
catgggcctataggtcccccaggtgatcgtggagccgatgacctatattcagtaggagga
ccaggcccatctggacccaggggagatattgggagcatgggtttaccaggtccccatgga
ataaagggagttctgggttaccatggaggcctgggacaagacggcagacccggtccatac
gggcctaaaggaactaaaggagagcccagttatgctcaaccaggccgcataggaccacct
ggacaaaagggcgagccagccttgtgtaacagccatggttccaagggagagagaggctct
cctggttgcgcaggtcgtccaggctcccaagggcccactggagccaaaggagacccagga
catcatggacatcatggacccctaggtcctgcagggccaccaggtaccgatggtcctcca
ggccccccaggacccactccgtcatatggagctccaggacaaccagggttacctggccct
cctggtctctgtggtcctaaaggtaaccagggtcgcgatggcattcctggacctgctggt
cagaagggagagacattgattgtggggtcgactcctggcctacgtggagagaatggacag
ccaggtccaaagggagatgtaggttttcctggccccactgttttggggcccccaggggtt
actggagaccaaggcattgaaggaccccaaggtcctcgtggtgagccagggcaccgagcc
gtttgtctcaaagggctgaaaggagacactggtcctcatggcagacctggaagccctggg
cgacggggtccacggggacagccagggtctggaggttatggatataatggggacagggga
gacacgggctctccagggggccgaggcttcgacgggcccagaggggacccagggcttcca
gggccattgggaccaagagccatccctggacctccaggaccaataggtgacccaggtcac
cctggacccccaggattccccggtgagacgggtgatcatagttataaccccggcacgaaa
ggaccaaacggggccaaaggccggccaggaccaccaggtcgtccagggcttgacgtgtct
ggacaagtgagattctatcaaggggatccaggcccacttggtcaccccgggaaccaagga
cttccaggtccaagtgggctgccaggacggccaggatttgcaggccccacgggcccgaag
ggtcagcatggacacagccctccaggcctgcctgggttccctggacgcaagggggacaag
ggatcaccgggacggacagggccggtgggctaccaggggtctccgggacagaagggttct
cgtggcccgtggggctctagcacggcaggcctggctgacagtttcctgcttgcccgacac
agccagacgatcagagtgcctgactgccccagaggtaccaccctcatctactctggatac
tctctgctcttcatcaatggcaatgaaagagcccacggacaagacctaggctccatgggc
agctgcctaccacgtttctccaccatgcccttcttgttctgtgacacggacaacacctgt
cgctacgccgcccgcaacgactactcctattggctgtcgacggagaagcccatgccgcgc
agcatggacctaatccgaggagatgagatagggagctacatcagcaggtgttcagtgtgt
gagggcagctccaatgccatcgccatccacagccagaccacccagaccccagactgtcct
cgtgactgggaatccctctggcctggatactcctttgtcatgcaaacgggtgcgggtgct
gaggggtcggggcagccgctagtctccccaggctcgtgcctggaacacttccgccaggtc
cccttcatcgagtgccacggccggggaacctgcaactacttcccagactcctacagctac
tggctggcctcgctcgacccgaatcgcatgttcagtaagcctgtgccccagactgtgaag
ggacgtcttctagagaatgtcatcagtcgctgccgcgtctgcaggaaaccctattga
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