Oncorhynchus tshawytscha (Chinook salmon): 112260270
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Entry
112260270 CDS
T05605
Symbol
rpap2
Name
(RefSeq) putative RNA polymerase II subunit B1 CTD phosphatase rpap2 isoform X1
KO
K20827
RNA polymerase II-associated protein 2 [EC:
3.1.3.16
]
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
otw01009
]
112260270 (rpap2)
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
otw03021
]
112260270 (rpap2)
Enzymes [BR:
otw01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.3 Phosphoric-monoester hydrolases
3.1.3.16 protein-serine/threonine phosphatase
112260270 (rpap2)
Protein phosphatases and associated proteins [BR:
otw01009
]
HAD phosphatases
Fcp/Scp phosphatases
112260270 (rpap2)
Transcription machinery [BR:
otw03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Others
112260270 (rpap2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RPAP2_Rtr1
Motif
Other DBs
NCBI-GeneID:
112260270
NCBI-ProteinID:
XP_024291009
LinkDB
All DBs
Position
LG10:45271291..45307587
Genome browser
AA seq
1112 aa
AA seq
DB search
MHIAQANAQRSQGATQRTQPTGQQTQATAQKRNSTSTENVPGKRQCNHFCKNKDQCGHDC
CQNGVPVVLKRPMNQHSSFSSYLQDLKTRSDTLTETPVKRLKMRMSGRTGATNIQHFSYT
PAACRFVGNHYGASTTQQSVESAEDFATPQEMAYLENYDHEYNDYLEDIYQTMGEEEPPP
IQTPTESQSTSMWRKPSAYNGGSLSHSTPQNQGMGYSQSHSTTQNQSTGYPQSHSTHQTH
SMGYPQSHFPLQNQSREETQSHNTPQSQTSGYSTPQSQSRSYSPSPIVDLTDDSGFLSSS
HTPSVTFDLGDEWDDFDDDNLVHASETSCTTVANTQGIDRDKLKGHSTPLPSTYVQPKPR
FTVSSAPLRSTSPVIPQIAVTSLSVRPHNLQASAPWSHSDNKATRTFSESSVKAPSFPKQ
TDTSMAPLGGQFDFFSKMTTLNNGNATGKRWEECQRSTGRCRGSNKNPCLPNPRREAVRE
TLREKLDLEKRALQVVERLLEDSVADDFLVDCARLITAANYKDTVEERSIVKLCGYPVCS
NKLGKVSTQQFKISTKTNKVYDITERKSFCSNFCYKASKSFELQISKSPLWLRQHESPPD
VKLMKKGDGGCTGEEVRLAERRLREDDVENPLPLDSVSPEAPEDPRRSPTAGHSDDSDAE
HDFVSSVVSQRRGPRVHWGDLAKRAAEGEGREPGEGEDRERRSGGKDTTVPKQIQTNKAE
DKEENTEESQKAQRKPSNGTDGRQQHTTDTNHQSEQQSFLGERGSPEGQSMEEAAELLSQ
VTIQARDPATATSSALTAYSVQNQEPAPNPSPQGDPAQPTQPGINITQVGMSRRGAQGLR
GLLKGHEAGTKPVSVRLNLLEGLRRTFTEWMTEETMKFLYGPDHFSKTLIETKKEEEEEL
DEDDLEDIVKDGGEGRETDSQGGPGRPLAPAPDYDTLRRETEEMGLRVREFYEGTKEVQR
VSGKQHARGGDSENQGGALPLVDSHAQHLIQKRITVEKLTKGLRDIVGPLRLTMTDVSSD
LNRLVRTFRFTNTNIIHKGPEWTLIAVVLLHLLSEVSPVVREALERPASVDYLSTLMQEL
PLLDRDLQSLVQLLRTVELCPHEHTEKRQTNQ
NT seq
3339 nt
NT seq
+upstream
nt +downstream
nt
atgcacatagcacaggctaacgctcagagatcacagggtgcaacacagagaacacagcca
acaggtcagcaaacacaggctacggcacagaagagaaactccacatccacagaaaatgtt
ccaggcaaaagacaatgtaaccacttctgcaaaaacaaggatcagtgtggccacgactgc
tgtcaaaatggagtgccggtggttctgaagaggcctatgaatcagcattcgagtttctcc
tcctacctccaagacctgaagaccaggagtgacacactgacggagactccagtcaaacgc
ctaaaaatgagaatgagtggtaggactggggctacgaacattcagcacttttcttatacg
cctgctgcttgcaggtttgtaggtaatcattatggcgcttcaacaacacaacagagtgtg
gaatcagctgaggactttgcaacgccccaagagatggcatatcttgagaactatgaccat
gagtataatgactacctggaagacatatatcagacaatgggagaagaggaaccaccacct
attcaaacccctacagagtcacaaagcacttcaatgtggaggaaacccagtgcatacaac
ggagggtcactcagccacagcaccccccaaaaccagggcatgggttactcccaaagccac
agcactactcaaaaccagagcacgggttacccacagagccacagcacccaccaaacccat
agcatgggttacccccaaagtcattttccccttcaaaaccagagtagggaggaaacccag
agtcacaataccccccaaagccagactagcggttacagcactccccaaagccagagcagg
agttactctccgagtcccatcgtagacttgaccgatgacagtggcttcctctcgtcgtca
cacacccccagcgtgacctttgacctgggagacgaatgggatgattttgacgacgacaac
ttagttcacgccagtgagacatcatgcaccactgtagctaacactcaggggattgaccgt
gacaagctgaaaggtcactcaacaccactaccatccacttatgtacaacccaaaccccgc
ttcactgtctccagtgccccactcaggtcaacctccccagttattcctcagatagcagtt
actagtctctcagtcagaccacataacctccaggcttctgctccctggagccactctgac
aacaaggccacaaggacattcagtgaatcctctgtgaaagcaccctccttcccaaaacag
acagatacaagcatggctccgctgggaggacagtttgatttcttctcaaagatgactacc
ctaaacaatggcaatgcgactggcaaaagatgggaagagtgtcaaagaagcacaggccgc
tgcagaggaagcaataagaacccttgtctccctaaccccaggagagaggccgtgagggag
accctgagagaaaagctggatctggagaagagggctctgcaggtggtggagcgtctcttg
gaggacagcgtagcagacgacttcctggttgactgtgcaaggttgatcactgctgccaat
tacaaagacacagttgaggagaggtccattgtgaagctgtgcggttatcctgtctgttca
aacaaactgggcaaggtctccactcaacagttcaaaatttccaccaaaaccaataaagtc
tatgacatcacggaacgcaagagcttctgcagtaacttctgctacaaagcctccaagtcc
tttgagctgcagatatcaaagagccctctgtggctgaggcagcacgagagccccccagat
gtgaaattaatgaagaaaggagatggcggttgcaccggagaggaggtgaggctggctgag
aggcgtctcagagaggacgatgtggagaacccccttcccttggactctgtgtcccccgag
gccccagaggaccccaggcgctcccctacagccggccacagcgacgacagcgacgcagaa
cacgactttgtctcaagcgtggtctcccagcgacggggacccagggtgcactggggcgat
ctggccaagcgcgccgccgaaggggagggtagggaacctggagagggggaggacagggag
agaaggtcgggagggaaggacacaacggtgcccaagcaaatacaaacaaacaaggcggaa
gacaaggaggagaatacagaagaatcacagaaagcacaaaggaagccaagcaatgggaca
gatggacgccaacagcacaccacagatacgaaccaccagagtgagcagcaatctttcctg
ggagagagagggtcgccagagggccagtctatggaggaagctgcagagctattgagccaa
gttacaatacaggctcgagacccagccacagctacgtcttctgcactaacagcctacagt
gtacagaatcaagaaccagctccaaaccccagtccacagggggacccagcacagcccacc
cagcctggcatcaacatcacccaggtgggcatgagcagaaggggagcccaggggctccgg
gggctcctcaagggccacgaagccgggactaaacctgtctcggtccggctgaaccttcta
gaaggcctaaggaggaccttcactgaatggatgactgaggagactatgaagttcttatat
ggcccagaccactttagtaaaacactgatagaaacaaagaaggaggaggaagaggagcta
gatgaagatgacttggaggacattgtgaaggatggtggggagggacgtgagactgactcc
caagggggtccaggaaggcccttggccccggccccagactacgacaccctacgcagggag
acagaggagatggggctgagggtgagggagttctacgaagggacgaaggaagtccagcgg
gtgtcagggaaacaacatgccagaggcggagactcagagaaccagggtggggcactcccg
ttggttgactcccatgcccagcacctcatccagaaacggattacagtggagaagctcact
aaaggcctgagagacatcgtgggtcctctgcgtctcaccatgactgacgtctccagtgac
ctcaacaggctggtcagaaccttcaggtttacaaacaccaacatcatccacaaaggccca
gagtggaccctgattgcagtggtgctcctccatttgttatcagaggtgtccccagtggtg
cgggaggccctggagaggccggcctcagtcgattacctctctactctgatgcaggagctc
ccactgctggaccgggacctgcagagcctggtccagttactcagaaccgtagagctctgt
ccacacgagcacacagagaaacggcagacaaatcaatga
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