Oncorhynchus tshawytscha (Chinook salmon): 112260280
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Entry
112260280 CDS
T05605
Name
(RefSeq) voltage-dependent R-type calcium channel subunit alpha-1E
KO
K04852
voltage-dependent calcium channel R type alpha-1E
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04010
MAPK signaling pathway
otw04020
Calcium signaling pathway
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
112260280
04020 Calcium signaling pathway
112260280
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
otw04040
]
112260280
Ion channels [BR:
otw04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
112260280
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Ca_chan_IQ
GPHH
PKD_channel
Phage_TAC_15
Motif
Other DBs
NCBI-GeneID:
112260280
NCBI-ProteinID:
XP_042183811
LinkDB
All DBs
Position
LG01:complement(24610660..24703328)
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AA seq
2119 aa
AA seq
DB search
MILATIIANCIVLALEQHLPGEDKTPMSKRLEKTEPYFIGMFCFEAGIKVVALGFVFHKG
SYLRNGWNVMDFIVVLSGILATAGAHMNIPVDLRTLRAVRVLRPLKLVSGIPSLQIVLKS
IMKAMVPLLQIGLLLFFAILMFAIIGLEFYSGKLHSTCLPMPNILENETVDKSESEFPCG
VRKCPDKYTCHDTWIGPNDGITQFDNILFAVLTVFQCITMEGWTTVLYNTNDALGPTWNC
MYFIPLIIIGSFFVLNLVLGVLSGEFAKERERVENRRAFMKLRRQQQIERELNGYRAWID
KAEEVMLAEDNKNSGPSALDVLKRATIKRREERRGLDQQYGDISSVGIPMTRASIRSAKR
GPTAYLKRKERLLRISLRRMVKTHIFYWTVLGLVALNTLCVAIVHHNQPHWLSVFLYYAE
FLFLGLFLTEMCLKMYSLGPRLYFHSAFNRFDCGVIVGSIFEVMWGFFRPGMSFGISVLR
ALRLLRIFKITKYWASLRNLVVSLMNSMKSIISLIFLLFLFILVFALLGMQLFGGRRRRP
YLYRKRAIHRSRPAYSLEEAESLAEGPPCPPLNSSNSFMSRRERSRRMTMSVWEQRTSQL
RRHRQMSSREILFSNPSDEQEAPPGCPHHLKATGTPTGSLKLADPTADPKDFTAKPPKPM
EMPLEEPALSMGVPEPHLSSPLPEPPDPTDTPLPVSPTSTAVFIPEPTESEPCPEGKRGI
PNHCHQGFNGRRSPWLNGERRQRAVRKFRPPAGDTLTTDMEGMRLRRPQGTGHCEAQAGA
RGLDSPQGEGSSRSVSMEMKTPEDPVEEVRKDGNKGETSQPSKTREAEHRQRDHDQTGGP
ELQNREEGLQSDPPTLQPSQAAVLALPEGPTGDSETDSNATTLNQSPLSSSIVIEVTDVQ
LSLELTPITGNSKDVEASKPEKDEEEVANPVNTVTPDSMFIFKPDNRIRRACHYVVNLRY
FEMCILLVIAASSIALAAEDPVSATSNWNKVLRYFDYVFTGVFTFEMIIKMIDQGLILHD
GSYFRDLWNILDFIVVVGALVAFALTNVLGNNKGRDIKTIKSLRVLRVLRPLKTIKRLPK
LKAVFDCVVTSLKNVFNILIVYKLFMFIFAVIAVQLFKGKFFYCTDGSKDTEKDCQGFYI
NYEKDKQEVKRREWRRHDFHYDNIVWALLTLFTVSTGEGWPQVLQHSVDVTEEDRGPSQG
NRMEMSIFYVIYFVVFPFFFVNIFVALIIITFQEQGDKMMEECSLEKNERACIDFAISAK
PLTRYMPQNRQTFQYRLWHFVVSPSFEYTVLAMIALNTIVLMMKYYSAPPVYEAVLKHLN
TAFTVLFSVECVLKIMAFGFLNYFRDTWNIFDFITVLGSITEIVVDLQSIETFNMGFLKL
FRAARLIKLLRQGYTIRILLWTFVQSFKALPYVCLLIAMLFFIYAIIGMQVFGNIRLDEE
THINQHNNFKTFFGALMLLFRSATGESWQEIMLSCLGGQKCEPDPLALTSDHEERCGTEF
AYFYFVSFIFFSSFLMLNLFVAVIMDNFEYLTRDSSILGPHHLDEFVRIWGEYDRAACGR
IHYTDMYEMLTDMSPPLGLGKKCPSKVAYKRLVLMNMPVDEEMSVHFTSTLMALIRTALE
VKIARGGEDRGQMDSDLQKEISIIWPHLSQKTLDLLVPIHKANHMTIGKIYAAMMIMDYY
KQSKAKKLRQQLEEQKHAPMFQRMDASSLPQDILCSAKALPFLTHSAGSALTRGGFVALS
PISPQEMFMQPMSQDLEDREEDYHHYHHHHHQLHTLVPERKEFNRILCPTNRQDAPLKVP
GWAVSIRASSMPQLAVDTQVGTDSSKLMKRSFSTIGDQCVNGLWQEEYSLERVSSDRLYR
PRQRSIRGIRSNLREPVDQERGRSKERRHLLSPDVSRCNSEERGQDPSQERKQSRSPSEG
HAHVHHRQGNTSGSPGLSNSESSTPSGRRQLPQTPSRPRPHISYSPLICRAHPSPSAVSE
GRAQTQEAPGETEEPLWREEGERPAQVAGGGSGVGVVVGVSDPGLGVSHPHPSPHRYISE
PYLPLHEEFHSPDSSGLEETLTFEVAIATSLGRANTISSAPQLRHNWQVPNGHFHKRLGQ
ASSVAACELLCDTDEDDRC
NT seq
6360 nt
NT seq
+upstream
nt +downstream
nt
atgatcctcgccaccatcatcgccaactgtatcgtcctggccctggagcagcacctgcct
ggagaggacaagacccccatgtctaagagactggaaaagacagagccttacttcattggg
atgttctgctttgaagctgggattaaagtggtggcattgggatttgtattccataaaggc
tcctacctgagaaatggctggaacgtcatggatttcattgtggttctgagtgggattctg
gccacagcgggagctcacatgaacatcccagtggacctgcggacgctgagggccgtccgt
gtactcagacccctcaaactggtctctggaatccccagcctgcagatagtcctgaaatct
atcatgaaagccatggtgccgctgctccagattggcctgttgctcttcttcgccattctc
atgtttgccatcatcggcctggagttctacagcgggaagctccacagcacctgtctgccc
atgcccaatatcctagagaatgagacggtggacaagtctgagtcagagttcccgtgtggg
gtaaggaagtgccctgacaagtacacctgccatgacacctggatcggccccaacgacggc
atcacccagtttgacaacatcctgtttgctgtgctcactgtcttccagtgcatcaccatg
gagggctggaccaccgtgctctacaacaccaatgatgctttaggtcccacttggaactgc
atgtacttcatccctctgataatcattggctccttcttcgtgttgaacctggtattggga
gtgctctcaggagagtttgccaaagagagggagcgggtggagaaccgcagggcgttcatg
aagctgcggaggcaacagcagattgagagggaactcaatggctaccgggcctggattgac
aaagcagaggaagtgatgcttgcagaggataataagaattcaggaccgtctgctcttgat
gtgctgaagagggccacaatcaagaggagagaggagaggagaggactggaccagcagtat
ggtgacatctcttctgtgggcatcccgatgaccagagccagcatcaggagtgctaagaga
ggacccaccgcttatttgaagcgtaaggagcgtctgctgcggatctctctccgccgcatg
gtgaagacacacatcttctactggaccgtactgggcctggtggccctcaacacactctgt
gttgccatcgtccatcacaaccaaccccactggctgtctgtgttcctctactatgcagag
ttcctctttctgggtctgtttctcactgaaatgtgtttaaagatgtacagcctgggaccc
agactctacttccactccgccttcaatcgcttcgactgcggggtgatagtgggaagcatc
tttgaggtgatgtggggattcttcaggcctggcatgtcctttggcatcagtgtgctgcgt
gcgctccgtctgctgaggatattcaagatcaccaagtactgggcgtcgctgaggaacctg
gtggtatctctgatgaattctatgaaatcaatcatcagcctcattttcctcctcttcctc
ttcatcctggtctttgctctgctgggcatgcagctctttggtggcaggaggaggagaccc
tacctgtataggaaaagagcgatacacaggagccggcctgcctactctctggaggaggct
gagagcctcgccgaggggcccccatgcccgccactgaattcctctaactctttcatgtcc
aggagggagaggagtagacggatgaccatgtctgtgtgggagcagagaaccagccaactg
cgcaggcaccggcagatgtccagccgagagatcctcttcagcaaccccagtgatgagcag
gaagcgccccctggctgtccccaccacctcaaagcaacaggcacacccacaggcagcttg
aagctggctgatcccacagctgaccctaaggacttcacagctaagcccccaaagcccatg
gagatgcccctagaggaaccagccctgtccatgggtgtccctgagccccacttatccagc
cctttaccagagccacccgatcccactgacacgcccctgccggtctcccccacgtccaca
gctgtgttcataccggagcctacagaatctgagccatgcccagagggcaagcgtggcatc
cccaaccactgccaccaaggtttcaatggccgcaggagcccctggttgaatggggagaga
aggcagagagcggtgcgtaagttccgccctcctgctggtgacaccctgaccactgacatg
gaaggcatgaggctcaggaggccacagggcacagggcactgtgaggctcaggctggggcc
agaggcttggactcacctcagggggagggcagcagtcgctctgtcagcatggagatgaag
accccagaggacccggtggaggaggtgaggaaagacggtaacaagggagaaaccagccaa
ccttccaagaccagggaggctgaacacagacagagggaccatgatcagactgggggtcct
gagctgcagaacagggaggagggtctacagtcagatccacccaccctgcagccatctcag
gctgcagttctggcactaccagagggccccacaggagacagtgagaccgatagcaatgcc
accactctgaaccagtcccctctgagttccagtatcgtcatcgaggtgaccgatgtccag
ttgtcactagagctcacccccatcacaggcaacagtaaagatgtggaggcgtccaagcct
gagaaggacgaggaagaggtggccaacccagtcaatactgtcacacctgacagtatgttc
atcttcaaacctgacaatcggatccgccgggcctgtcactatgtggtgaacctgcgttac
tttgagatgtgcatcctgctggtgatcgctgccagcagtatcgccctcgctgcagaagac
cccgtttcagccacctccaactggaacaaagttttgcgttactttgactacgtgttcaca
ggtgtctttacctttgaaatgataataaagatgatagaccagggcttgattctccatgac
ggctcctacttccgggacctgtggaacattctagactttatcgtggtggtcggagctctg
gttgccttcgccctcacgaatgtgctgggaaataataaaggacgggacatcaaaaccatc
aagtctcttcgggtgctgcgcgtcctgaggcccctgaagaccatcaagagactaccgaaa
ctcaaggcagtgtttgactgtgtggtgacctctctgaagaacgtcttcaacatcctcatc
gtctacaagctcttcatgttcattttcgctgtcatcgctgtgcagctgttcaaggggaag
ttcttctactgcactgacggatccaaagacacagagaaggactgccagggcttctacatc
aactatgagaaagacaagcaggaggtgaagaggagggagtggaggagacatgactttcac
tatgacaatatagtctgggccctactcactctgttcaccgtctccactggggaaggctgg
ccacaggtcctgcagcactctgtggatgtgacagaggaggacagaggacccagccagggc
aacaggatggagatgtccatcttctatgtcatctactttgtggtcttccccttttttttc
gtcaacatatttgtggctctcatcatcatcaccttccaggagcagggagacaagatgatg
gaggagtgcagcttggagaagaatgagagggcttgcattgactttgccataagtgccaaa
cccctgacccgctacatgcctcagaacagacagacgttccagtaccgcctctggcacttt
gtggtctccccctcctttgagtacaccgtgctggccatgattgcactcaacaccattgtc
ctgatgatgaagtattattcagccccaccagtgtacgaggctgtgctgaaacacctgaac
acagccttcactgtgctcttctctgtggagtgtgtcctcaagatcatggcatttggcttt
ctgaactactttcgagacacttggaatatatttgacttcatcacggttttgggcagcatc
acagaaatagtggtggacctgcagtcaattgagaccttcaacatgggtttcctgaagctg
ttccgagctgctcgactgatcaagctgttgaggcagggttacaccatccgcatcctgctc
tggacctttgtccagtcctttaaggctctcccctacgtctgtctgctcattgccatgctc
ttcttcatatatgcaatcatcggaatgcaggtttttggaaacatcagactggatgaggag
actcacatcaaccaacacaacaacttcaagaccttctttggtgctctgatgttgctattc
aggagtgccacgggggagtcgtggcaggagatcatgctgtcatgtttaggggggcagaag
tgtgagccagaccccttagctctaacgtcagaccatgaggagcgctgtggaactgagttt
gcctacttctactttgtttccttcatcttcttcagctcatttctgatgctgaatctgttt
gtggctgtgatcatggacaactttgagtacctcacccgggattcttccatcttggggcct
catcatctggatgagtttgttcgtatctggggtgaatacgaccgagctgcttgcgggcgt
attcattacactgacatgtacgagatgctgactgatatgtcgccacctcttggcctcgga
aagaaatgtccctccaaagtggcttataagaggctggtgctgatgaacatgcccgtggat
gaggagatgtctgttcacttcacctccaccctcatggccctgatccgaactgccctggag
gtcaagatagccagaggaggggaggacagggggcagatggattcagacctacagaaggag
atcagtatcatctggccacacctttctcagaagacgctagacctgctcgtccccatccac
aaagccaatcatatgaccattgggaagatctatgcagctatgatgatcatggactactac
aagcagagcaaagccaagaagctcaggcaacagttggaggagcagaaacacgctcccatg
ttccagcgtatggacgcgtcctctctgcctcaggacatcctctgcagtgccaaagccctc
ccctttctgacccacagcgctggatctgccctgaccagaggagggtttgtggccttgagt
cccatctccccccaggagatgttcatgcagcccatgtcccaggacctagaggacagagag
gaggactaccaccactatcaccaccaccaccaccagctccacactctggttccggagcgc
aaagagtttaaccgcatcctttgccctactaacaggcaggatgccccactcaaggtgccc
gggtgggcagtctctatccgagcctcgtctatgcctcagctggctgtagacacacaggtt
gggacagacagcagcaaattgatgaaacgctccttctccactattggtgatcagtgcgta
aatgggctgtggcaggaggagtactctctggagagggtcagttctgaccgtctgtataga
ccacgacagaggagcatcagaggcatcaggtccaacctcagggaaccagtggatcaagag
cgggggcgctccaaagagcggcgccacctgctgtctcccgacgtgtcccgctgcaactct
gaggagcggggccaggacccatcacaggaacgcaagcagtcccgctcccccagcgaggga
cacgcacatgtccaccatagacagggcaacacttcaggcagcccaggcctgtctaactct
gagtccagcacacccagtggccgtcggcagctcccccagacgccatcgcggccacgcccc
cacatctcctactcccccctgatatgccgagcccacccctccccctctgctgtcagcgag
ggcagagcccagacccaggaggcccctggagagacggaggagcccttgtggagggaggaa
ggggagaggccagcccaggtggcaggaggaggatcgggggtgggggtggtagtaggggtg
agtgacccagggttaggggtcagtcacccacatccctcccctcaccggtacatctcggag
ccatacctgcccctgcacgaggagttccacagcccagactcctcaggcctggaggagact
ctgaccttcgaggtggccattgcaaccagtctgggtcgggccaacaccatcagctctgcc
ccccagctcagacacaactggcaggtccccaacggacacttccataaacgcctgggtcag
gccagctctgtggccgcctgcgagctcctgtgtgacaccgacgaggatgaccgctgttag
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