Oncorhynchus tshawytscha (Chinook salmon): 112260342
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Entry
112260342 CDS
T05605
Symbol
lrrcc1
Name
(RefSeq) LOW QUALITY PROTEIN: leucine-rich repeat and coiled-coil domain-containing protein 1
KO
K16475
leucine-rich repeat and coiled-coil domain-containing protein 1
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
otw03036
]
112260342 (lrrcc1)
Chromosome and associated proteins [BR:
otw03036
]
Eukaryotic type
Centrosome formation proteins
Centriole proteins
112260342 (lrrcc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_4
LRR_8
LRR_9
LRR_NXF1-5
LRR_6
Motif
Other DBs
NCBI-GeneID:
112260342
NCBI-ProteinID:
XP_042184567
LinkDB
All DBs
Position
LG10:47634184..47659011
Genome browser
AA seq
1022 aa
AA seq
DB search
MADGELCLIDKSISSLLEVPLSANVTSLNLHCNRILKVEGLTTAWHLRHLDLSSNHISRI
EGLNSLASLRTLNLSCNLITKVEGLNGLVNLIRLNLAYNQISDLTGLLYLHGAEYKLRHL
HLHSNRLDSINQLLQCMLGLENLSDVTLSVEGAGNSLCSLPGYREMVLQSLPQVSSLDGV
DRLGNPAPLGEDSPIDIPGLENYVDFLLPSDTSANELARVDGSSTTSHIDEVLKQFRQRA
GGPVGAPDPVRRPQVPQPGWATAGSYSTAADPNNEQRIQKLEHQVSRLFQQTPAGEVSSS
STPFVKVRRPKRDIDNTSESECDSGKENRGRRSRIPTRHRSSNSPAVKRTIKQPTKAKQP
DSDQERSKGKSSKCSVVPGRKSGVHQAFGGADSIGPVRKTPSSTKQAVEETYRAIVEERD
QERERRWKAEQAVRKLTEQMKTLQTQASQEKDLQSMALHTTDRLKELLLKERSERSGLQA
RVEELDERCQSSALQLEQVLQREEQHKRALRSLEDSTSHSEARKARRQAEEMKRSQELEN
KASALMRELEIQRASLRQHKDKLRQLHELLASREQVHRKELEGRLVPGGAEFQEVVAKEV
AVVEQRHAQSRAGLEDRLAQASQQYTALEDEFRMALTIEAARFTEVEQGCTRLSAELSEV
KAALSQTQQRERQAGGLVQELTAMVKEQKSRITELSKSKRDAVTELKGRVRSLEAGAEED
RRLQLQLELVKKDKARLLSQLTAQESVIDGLRAERRIWGQELAQQGASLSQDRGRLETLQ
GQARIEVLAAELESQKKQNERDNDALRIKVKVIDDQTETIRKLKEGLQERDEQGRRQREE
SLQAQRRLQQQLEESSATSQDLGDTVQQLSLRKEQLKQQLEDKEMELDEVKAAFSVSNKK
WQDKADLLTRLESQVKRMKEGFDSKESLLLEERDKASQAHKAVVEKLHSMDDAFRRQLES
LQASHQTELLRLANDKQKRIEQSNQKVFQVEEEMRQLLEETETEKKTMEEKMRRLTSVLK
DF
NT seq
3069 nt
NT seq
+upstream
nt +downstream
nt
atggcggatggagagctgtgtctgatagataagagcatatcaagtttgctggaggtccca
ttgagtgccaatgtcacatccctgaatctgcattgtaaccgtattctgaaagtagagggc
ttgaccactgcttggcatctccgacacttggatctgtcgtccaatcatatctctcgcatc
gagggcctcaactctctagcctcactgagaaccttgaacttgtcctgcaacttgatcact
aaggtcgaaggactgaatggacttgttaacctgatacgattaaacctggcctataatcag
ataagtgacctcacaggtttgctgtaccttcacggggcagagtacaaattgagacacctc
catctccatagcaaccgcttggacagcatcaaccagctgctgcagtgcatgctgggactg
gagaatctgagtgatgtcaccctaagcgtggagggagcaggcaattcactctgcagctta
ccaggttacagagagatggtgctccagtccttaccccaggtctccagcctggatggggtg
gaccggctggggaaccctgctcctctgggggaggacagccccatcgacatccccggcctg
gagaattacgtggacttcttgctcccctcagacaccagtgccaacgaactggctagggtt
gatggctcttccaccacttcccatattgacgaggtgctgaagcagttccgccagcgggca
gggggcccagtgggggccccagatccagtcagacggccccaggttccacagccaggttgg
gctacagcgggcagctatagtacagcagcagacccaaacaatgaacagcgtatccagaaa
ctggagcaccaggtgtcccggctgttccaacagactcctgcaggggaggtctccagcagc
tccaccccctttgtgaaggtacggaggcccaagagggacatagacaacacgtcagagagt
gagtgtgatagcgggaaggagaaccgggggcgtcgctccagaatcccaactcggcacagg
agtagcaacagtcctgcagtgaagaggaccatcaagcagcccaccaaggccaaacaacca
gacagtgatcaagagagaagcaaagggaaaagttcaaagtgttcagttgtccctgggagg
aagtcaggcgtccatcaggcctttgggggtgccgactcaataggaccagtcaggaagacc
cccagcagcaccaaacaagcagtggaggagacttatagggcgatcgtggaggagcgtgat
caggagagagagaggcggtggaaggctgagcaggctgtgaggaagctgactgagcagatg
aagaccttgcagacccaggccagccaggagaaagacctgcagagcatggccctgcacacc
accgacagactgaaggagctgttgttgaaggagcgttcggagcgctctggtctgcaggct
cgcgtggaggagctggatgagaggtgtcagagctccgcgctgcagctggagcaggtcctg
cagcgggaggagcaacacaagagggcgctgcgcagcctggaggacagcacgtcccatagt
gaagcacggaaggcacgccggcaggctgaggagatgaagaggagccaggagctggagaac
aaggcatcggccctgatgagagaacttgagatccagcgagcttcgctccgacagcataaa
gacaagctacggcagctccatgaactgctggcttccagggaacaagtgcacaggaaggag
ctggagggtcggctggtgccaggcggggcggagttccaggaggtggtggccaaggaggtg
gctgttgtagagcagagacacgcccagagcagggctgggttggaggacagattggcccag
gcctcacagcagtacactgccctggaggacgagttccgtatggccctcaccatcgaggct
gctcgcttcactgaggtggagcagggctgtacccggctgagtgctgagctgtcggaggtg
aaggctgccctgtctcagacccaacagagagagagacaggcagggggtctggtgcaggag
ctcaccgccatggtcaaggagcagaagagccgcatcacagagctcagcaaatccaagcga
gacgccgtcacggagctcaagggccgcgtgcggtctctggaggcgggggcggaggaggac
aggcgtctgcaactgcagctggagctggtgaagaaggacaaggccaggctgctgtcccag
ctcaccgcccaggagtccgttatagacggcctcagagctgagaggaggatctggggacag
gagctggctcaacaaggagcgtctctgtcccaggacaggggtcgtctggaaacacttcaa
ggccaggcgaggattgaggtgttggctgctgaactggagagtcagaagaaacagaacgag
cgagacaacgatgccctgaggatcaaagtcaaggtcatcgatgaccagacagagaccatt
cgcaaactcaaagagggcctacaagagcgtgacgagcagggccggaggcagcgcgaggag
agcctgcaggcccagcggcgcctgcagcagcagctggaggagtcgtcagccacatcgcag
gacctgggagacacggtgcagcagctcagtctccgcaaggagcagctcaagcaacagctg
gaggacaaggagatggagctggacgaggtcaaggccgccttcagtgtgtccaataagaag
tggcaggacaaggctgacctgctgacccggctggagagccaggtgaaacgcatgaaggag
ggcttcgactctaaagagagcctgctgctggaggagagagacaaggcctcacaggcgcac
aaagcggtggtagagaagctacacagtatggacgatgcattccggcgacagctggagtcg
ctacaggcatcccatcagaccgagctcctacggctggccaatgacaagcagaaacggatt
gaacagtctaatcagaaggtatttcaggtggaggaggagatgcgtcagctcctggaggag
actgaaactgagaagaaaacaatggaggagaagatgagacgtctcaccagcgtattgaaa
gacttctaa
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