Oncorhynchus tshawytscha (Chinook salmon): 112260414
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Entry
112260414 CDS
T05605
Name
(RefSeq) integrin beta-1 isoform X1
KO
K05719
integrin beta 1
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03271
Virion - Rotavirus
otw04145
Phagocytosis
otw04510
Focal adhesion
otw04512
ECM-receptor interaction
otw04514
Cell adhesion molecule (CAM) interaction
otw04517
IgSF CAM signaling
otw04518
Integrin signaling
otw04530
Tight junction
otw04810
Regulation of actin cytoskeleton
otw04820
Cytoskeleton in muscle cells
otw05100
Bacterial invasion of epithelial cells
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03271 Virion - Rotavirus
112260414
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
112260414
04514 Cell adhesion molecule (CAM) interaction
112260414
04517 IgSF CAM signaling
112260414
04518 Integrin signaling
112260414
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagocytosis
112260414
09144 Cellular community - eukaryotes
04510 Focal adhesion
112260414
04530 Tight junction
112260414
09142 Cell motility
04820 Cytoskeleton in muscle cells
112260414
04810 Regulation of actin cytoskeleton
112260414
09160 Human Diseases
09171 Infectious disease: bacterial
05100 Bacterial invasion of epithelial cells
112260414
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112260414
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
otw04147
]
112260414
04515 Cell adhesion molecules [BR:
otw04515
]
112260414
04090 CD molecules [BR:
otw04090
]
112260414
Membrane trafficking [BR:
otw04131
]
Endocytosis
Phagocytosis
Integrins (complement receptors)
112260414
Exosome [BR:
otw04147
]
Exosomal proteins
Proteins found in most exosomes
112260414
Cell adhesion molecules [BR:
otw04515
]
Integrins
Integrin beta subunits
112260414
CD molecules [BR:
otw04090
]
Proteins
112260414
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Integrin_beta
Integrin_B_tail
Integrin_b_cyt
EGF_integrin
I-EGF_1
EGF_2
EGF_Teneurin
vWA_SIBA-E
Motif
Other DBs
NCBI-GeneID:
112260414
NCBI-ProteinID:
XP_024291255
LinkDB
All DBs
Position
LG10:complement(51713547..51745129)
Genome browser
AA seq
804 aa
AA seq
DB search
MDLKLLSIATLLGILCFCSAQQEGSDCIKANAQSCGECIQVAEKCGWCTDADFLKQGESK
SARCDELKSLITKGCSKAKIENPRGSISIDKDKPVTNRKKDVAEKLKPDQITQIQPQKLS
LNLRSGEAQTFKLKFKRAEDYPIDLYYLMDLSFSMKDDLENVKNLGTDLMREMQEITSDF
KIGFGSFVEKTVMPYISTTPARLLNPCTSNENCTSPFSYKNVLKLTENGQQFNSLVSKQQ
ISGNLDSPEGGFDAIMQVAVCGDAIGWRNVTRLLVFSTDAGFHFAGDGKLGGIVLPNDGK
CHLENNMYTMSHYYDYPSIAHLVQKLSDNNIQTIFAVTEEFQPVYKELKNLIPKSAVGTL
SSNSSNVIKLIIDSYNSLSSEVILENNKVPEGVSIKYKSICKNGVVGTGENGRKCSNISI
GDEVSFDITIESQKCPSQGKSETIRIKPLGFNEDVEIVLNFICECECSKGGEPLSKICHN
GNGTFECGACRCNEGRIGRLCECSTDEVRTDDLDGNCRKDNGTDICSNNGDCVCGTCECK
KRENPEERYSGKFCDCDNFNCDRSNNKLCGGHGRCECRVCICDANYTGSACDCSLDTSTC
LAANKQICNGRGTCECGVCKCTNPKFQGPTCEICPTCPGVCAEHKECVQCRAFETGEKKD
TCQRDCSYFNLIRVKDRDKLPQPADQSYPLSHCKERDANDCWFYYTYAVRNDTMREVYVV
ETLECPAGPDIIPIVAGVVAGIVLIGLALLLIWKLLMIIHDRREFAKFEKEKMNAKWDTQ
ENPIYKSPINKFQNPSYGRKGVVL
NT seq
2415 nt
NT seq
+upstream
nt +downstream
nt
atggatctgaagctactttctatagcaacattattaggaatcctatgtttctgcagtgca
cagcaagagggcagtgattgcatcaaggcgaatgcacaatcatgtggggaatgcatccag
gtggcagagaaatgtggatggtgtacagacgctgacttcctgaagcagggagagtctaag
tcagctcgctgtgatgagctgaagtccctgatcacgaagggctgcagtaaggccaagatc
gagaacccccggggcagtatctccatcgacaaggacaagcccgtcaccaaccgcaagaag
gacgtggccgagaagctgaagcctgaccagatcactcagatccagccccagaaactcagc
ctcaacctccgatctggtgaggcccagacgtttaagttgaagttcaagcgggcagaggac
taccccatcgacctctactacttgatggacctctctttctccatgaaagacgatttggag
aacgtcaagaacctggggactgacctgatgcgtgagatgcaggagatcacgtcagacttc
aagattggtttcggctcatttgtggagaagactgtgatgccctacatcagcaccacccca
gccaggctgttgaacccctgcacgagcaatgagaactgcaccagccctttcagctataag
aatgtgctcaagttgaccgagaatgggcagcagttcaacagcctggtcagcaagcagcag
atctctggaaacctggactcccctgagggaggcttcgatgccatcatgcaggtggcggtc
tgtggggatgccattggctggaggaacgtcactcgtctgctggtgttctccactgacgct
gggttccactttgctggagacggcaaactgggcggcatcgttctgcccaacgatggaaag
tgtcatctggaaaacaacatgtacaccatgagccattactacgactatccctccattgcc
catttggtccagaaactgagcgacaacaacattcagacaatttttgcagttactgaggaa
ttccagccggtttacaaggaactgaagaatctcatccccaagtcagcagtaggaaccctg
tcctccaactccagcaacgtcatcaagctcattatcgattcttacaattctctttcatct
gaagtcattctggagaacaacaaggtgcctgaaggtgtgtccataaaatacaagtccatc
tgcaagaatggcgtggttggtacgggagagaacggaagaaaatgctctaacatctccatt
ggagatgaggtgtcctttgacattaccatcgagtcccagaagtgtccatctcaaggcaag
tcagagaccattaggatcaagccgctgggtttcaatgaggatgtggagattgtcctcaac
ttcatctgcgaatgtgaatgttccaaaggcggagaacctctcagcaagatctgccacaat
ggcaacgggacctttgagtgtggagcctgcaggtgcaacgaaggacgtatcggcagactg
tgtgagtgcagcacagatgaggtgaggacagacgacctggacggtaactgtcggaaggac
aacggtacagacatctgcagcaacaacggagactgtgtgtgtggaacttgtgagtgtaag
aagagggagaaccccgaagaacggtacagtgggaaattctgcgactgtgacaacttcaac
tgtgaccgctccaacaacaaactctgtggaggacatgggcgttgtgagtgcagggtgtgt
atctgcgatgccaactacacaggcagcgcctgcgactgttcactggacacctccacctgc
ctggcagccaacaagcagatatgtaatggccggggcacctgcgagtgtggcgtctgcaaa
tgcaccaaccccaagttccagggtcccacctgtgagatctgccccacctgccccggagtc
tgcgctgagcacaaggagtgtgttcagtgccgggcctttgaaaccggagagaagaaggac
acgtgtcagagggactgcagctatttcaacctgatcagagtgaaggatcgggacaagctg
ccccaaccagccgaccaatcctaccccctatcccactgtaaggagagggacgccaacgac
tgctggttctactacacctacgccgtcaggaacgacacaatgagggaggtctacgtggtc
gagactctggagtgcccagcgggccctgacatcatccccatcgtggctggcgtggtggcg
ggcattgtgctcattggcctggccctactgctcatctggaagctgctcatgatcatccac
gaccgcagagagttcgccaagttcgagaaggagaagatgaacgccaaatgggacacgcaa
gagaatcctatatacaagagccctataaataagttccagaatccaagctatgggcgtaaa
ggcgtggtcctataa
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