Oncorhynchus tshawytscha (Chinook salmon): 112260414
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Entry
112260414 CDS
T05605
Name
(RefSeq) integrin beta-1 isoform X1
KO
K05719
integrin beta 1
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03271
Virion - Rotavirus
otw04145
Phagosome
otw04510
Focal adhesion
otw04512
ECM-receptor interaction
otw04514
Cell adhesion molecules
otw04530
Tight junction
otw04810
Regulation of actin cytoskeleton
otw04820
Cytoskeleton in muscle cells
otw05100
Bacterial invasion of epithelial cells
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03271 Virion - Rotavirus
112260414
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
112260414
04514 Cell adhesion molecules
112260414
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
112260414
09144 Cellular community - eukaryotes
04510 Focal adhesion
112260414
04530 Tight junction
112260414
09142 Cell motility
04820 Cytoskeleton in muscle cells
112260414
04810 Regulation of actin cytoskeleton
112260414
09160 Human Diseases
09171 Infectious disease: bacterial
05100 Bacterial invasion of epithelial cells
112260414
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112260414
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
otw04147
]
112260414
04515 Cell adhesion molecules [BR:
otw04515
]
112260414
04090 CD molecules [BR:
otw04090
]
112260414
Membrane trafficking [BR:
otw04131
]
Endocytosis
Phagocytosis
Integrins (complement receptors)
112260414
Exosome [BR:
otw04147
]
Exosomal proteins
Proteins found in most exosomes
112260414
Cell adhesion molecules [BR:
otw04515
]
Integrins
Integrin beta subunits
112260414
CD molecules [BR:
otw04090
]
Proteins
112260414
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Integrin_beta
Integrin_B_tail
Integrin_b_cyt
EGF_integrin
I-EGF_1
EGF_2
EGF_Teneurin
vWA_SIBA-E
Motif
Other DBs
NCBI-GeneID:
112260414
NCBI-ProteinID:
XP_024291255
LinkDB
All DBs
Position
LG10:complement(51713547..51745129)
Genome browser
AA seq
804 aa
AA seq
DB search
MDLKLLSIATLLGILCFCSAQQEGSDCIKANAQSCGECIQVAEKCGWCTDADFLKQGESK
SARCDELKSLITKGCSKAKIENPRGSISIDKDKPVTNRKKDVAEKLKPDQITQIQPQKLS
LNLRSGEAQTFKLKFKRAEDYPIDLYYLMDLSFSMKDDLENVKNLGTDLMREMQEITSDF
KIGFGSFVEKTVMPYISTTPARLLNPCTSNENCTSPFSYKNVLKLTENGQQFNSLVSKQQ
ISGNLDSPEGGFDAIMQVAVCGDAIGWRNVTRLLVFSTDAGFHFAGDGKLGGIVLPNDGK
CHLENNMYTMSHYYDYPSIAHLVQKLSDNNIQTIFAVTEEFQPVYKELKNLIPKSAVGTL
SSNSSNVIKLIIDSYNSLSSEVILENNKVPEGVSIKYKSICKNGVVGTGENGRKCSNISI
GDEVSFDITIESQKCPSQGKSETIRIKPLGFNEDVEIVLNFICECECSKGGEPLSKICHN
GNGTFECGACRCNEGRIGRLCECSTDEVRTDDLDGNCRKDNGTDICSNNGDCVCGTCECK
KRENPEERYSGKFCDCDNFNCDRSNNKLCGGHGRCECRVCICDANYTGSACDCSLDTSTC
LAANKQICNGRGTCECGVCKCTNPKFQGPTCEICPTCPGVCAEHKECVQCRAFETGEKKD
TCQRDCSYFNLIRVKDRDKLPQPADQSYPLSHCKERDANDCWFYYTYAVRNDTMREVYVV
ETLECPAGPDIIPIVAGVVAGIVLIGLALLLIWKLLMIIHDRREFAKFEKEKMNAKWDTQ
ENPIYKSPINKFQNPSYGRKGVVL
NT seq
2415 nt
NT seq
+upstream
nt +downstream
nt
atggatctgaagctactttctatagcaacattattaggaatcctatgtttctgcagtgca
cagcaagagggcagtgattgcatcaaggcgaatgcacaatcatgtggggaatgcatccag
gtggcagagaaatgtggatggtgtacagacgctgacttcctgaagcagggagagtctaag
tcagctcgctgtgatgagctgaagtccctgatcacgaagggctgcagtaaggccaagatc
gagaacccccggggcagtatctccatcgacaaggacaagcccgtcaccaaccgcaagaag
gacgtggccgagaagctgaagcctgaccagatcactcagatccagccccagaaactcagc
ctcaacctccgatctggtgaggcccagacgtttaagttgaagttcaagcgggcagaggac
taccccatcgacctctactacttgatggacctctctttctccatgaaagacgatttggag
aacgtcaagaacctggggactgacctgatgcgtgagatgcaggagatcacgtcagacttc
aagattggtttcggctcatttgtggagaagactgtgatgccctacatcagcaccacccca
gccaggctgttgaacccctgcacgagcaatgagaactgcaccagccctttcagctataag
aatgtgctcaagttgaccgagaatgggcagcagttcaacagcctggtcagcaagcagcag
atctctggaaacctggactcccctgagggaggcttcgatgccatcatgcaggtggcggtc
tgtggggatgccattggctggaggaacgtcactcgtctgctggtgttctccactgacgct
gggttccactttgctggagacggcaaactgggcggcatcgttctgcccaacgatggaaag
tgtcatctggaaaacaacatgtacaccatgagccattactacgactatccctccattgcc
catttggtccagaaactgagcgacaacaacattcagacaatttttgcagttactgaggaa
ttccagccggtttacaaggaactgaagaatctcatccccaagtcagcagtaggaaccctg
tcctccaactccagcaacgtcatcaagctcattatcgattcttacaattctctttcatct
gaagtcattctggagaacaacaaggtgcctgaaggtgtgtccataaaatacaagtccatc
tgcaagaatggcgtggttggtacgggagagaacggaagaaaatgctctaacatctccatt
ggagatgaggtgtcctttgacattaccatcgagtcccagaagtgtccatctcaaggcaag
tcagagaccattaggatcaagccgctgggtttcaatgaggatgtggagattgtcctcaac
ttcatctgcgaatgtgaatgttccaaaggcggagaacctctcagcaagatctgccacaat
ggcaacgggacctttgagtgtggagcctgcaggtgcaacgaaggacgtatcggcagactg
tgtgagtgcagcacagatgaggtgaggacagacgacctggacggtaactgtcggaaggac
aacggtacagacatctgcagcaacaacggagactgtgtgtgtggaacttgtgagtgtaag
aagagggagaaccccgaagaacggtacagtgggaaattctgcgactgtgacaacttcaac
tgtgaccgctccaacaacaaactctgtggaggacatgggcgttgtgagtgcagggtgtgt
atctgcgatgccaactacacaggcagcgcctgcgactgttcactggacacctccacctgc
ctggcagccaacaagcagatatgtaatggccggggcacctgcgagtgtggcgtctgcaaa
tgcaccaaccccaagttccagggtcccacctgtgagatctgccccacctgccccggagtc
tgcgctgagcacaaggagtgtgttcagtgccgggcctttgaaaccggagagaagaaggac
acgtgtcagagggactgcagctatttcaacctgatcagagtgaaggatcgggacaagctg
ccccaaccagccgaccaatcctaccccctatcccactgtaaggagagggacgccaacgac
tgctggttctactacacctacgccgtcaggaacgacacaatgagggaggtctacgtggtc
gagactctggagtgcccagcgggccctgacatcatccccatcgtggctggcgtggtggcg
ggcattgtgctcattggcctggccctactgctcatctggaagctgctcatgatcatccac
gaccgcagagagttcgccaagttcgagaaggagaagatgaacgccaaatgggacacgcaa
gagaatcctatatacaagagccctataaataagttccagaatccaagctatgggcgtaaa
ggcgtggtcctataa
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integrated database retrieval system
