Oncorhynchus tshawytscha (Chinook salmon): 112260446
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Entry
112260446 CDS
T05605
Name
(RefSeq) protein SMG7-like isoform X1
KO
K14409
protein SMG7
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
112260446
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
otw03019
]
112260446
Messenger RNA biogenesis [BR:
otw03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
112260446
mRNA cycle factors
Common to processing body (P body) and stress granule
112260446
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
TPR_2
Motif
Other DBs
NCBI-GeneID:
112260446
NCBI-ProteinID:
XP_042184699
LinkDB
All DBs
Position
LG10:complement(54379251..54407194)
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AA seq
1190 aa
AA seq
DB search
MNQCGQYLSRQAEALKADMTDSKLGAAEVWTSRQALQDLYQKMLVTDLEYALDKKVEQDL
WNHAFKNQITTLQSQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCR
VKSSQLGIISNKQTNPSTIVKPQPSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQ
LVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALTKAIESHDEV
KTKWSMSDFIKAFIKFHGHVYLSKSLEKLNNLREKLEEQFQRLIRQKAFSSQQLVHITII
NLFELHHLRDFGNEADDQSFSSDEQIGWFQLLGLFMSFLGIMCSQALLNKNRGEEIMGEC
PLPAIKVSLDWLKLRSTVFQDSAVNKRQYVWPWLVSILNSFQPKEDDVSCASVTPLPEEF
ELQGFLALRPALRILDFTKGHQGVAVDKEGLPVRARHQRLISLGKWVADNQPGLIQYKFS
DSLLLFITDIEELTIEEPQEKDAPVLQESSNGEQTPNEGNMGLKSVLSMGKTQNSVLEIG
ERPVVTFKENIKPQEQSREPSRNQHHKDAGKERRDFGKGNGALGKGEQKRDGKRKSEVKK
NSHEKAADAGKQVKAQPEMRTPVSEARKTPVTQTQTTCSSQFIPIHHPGAFPPLPSRPGF
PSPSYVIPPPVAFSMNPGFTFSTGMSVSGPFLQPVSHPQQPGAQQVQVQAGKPSHIPYSQ
QRPAGPGAMNQGPPQGQQGPPQQQPSQAQQSMQQSVQLQALAQQQQQQSPTKPVQPVQLG
KSPPHHPGMHQQYMQVDQAGQMWGQHQGQPTMQKMQAMQVPVKQPYYGMPPQDSLKLFEQ
HPVQTVGQMPMQPQQQNSMDKKMKYPDVKMQDFYWELPYRMGDNRQTVVERMGKRPPPGV
FHPDQDNAPRGPPFEDNKSSPLLPPDLLKSLSNFEEEELVFTKPHGFYQALASPLSTAPG
RNLFSRMESGAEVMGQSSSLMPLSGFPIQESSYQNSIFSQAYGKNMSPNPKPDAPMLHQE
PSLYSLFEGTPWSPSLPASSDHSTPASQSPHSSNPSSLPSSPPTHNHGSIPFSNFGPIGT
PDSRDRRMVDRWKLEKTGAVSGFGLDYLPAVSSSTDHRAPENSWHQGNAPSSSWAAQESP
MEDSSTVLLDSLKSIWSSSMMQPGPSALEQLLMQQKQKQQRGHGTMNPPH
NT seq
3573 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaatgcggccaatatttaagcaggcaggcagaggccctgaaggctgacatgaca
gattctaagcttggcgcagcagaggtctggacttcaaggcaggctcttcaggacttgtac
cagaagatgctggtgactgacctggagtatgctttggacaagaaagtggagcaagatctc
tggaatcatgcttttaagaatcaaataacaacactacagagtcaagccaagaacagagcc
aaccccaatagaagtgaggtgcaggccaatctgtccttgtttctcgaagcagctagtgga
ttttacacacaattactacaggagctgtgtaccgtgttcaacgtggatttgccgtgtcgt
gtgaaatcatctcagcttggaattatcagcaataaacagaccaaccccagcaccattgta
aaaccccaacctagctcttgctcttatatctgccagcattgtcttgtccaccttggcgac
attgcacgatatcgcaaccaaaccagccaggcagagtcctattacagacatgcagctcaa
cttgtcccctcaaatggtcagccttacaatcagctggccatcctggcctcctctaaaggg
gaccacctcacaacgatattctactactgcaggagcatcgccgtcaagttccctttccct
gcagcctccaccaacctgcagaaagctctcactaaagctattgaaagccacgatgaggtc
aaaacaaagtggagtatgtcagatttcatcaaggccttcatcaagttccacggtcacgtt
tacctgagcaagagtttggagaaactcaacaacctgagggagaagctggaagagcagttt
cagaggctgattcgacagaaagccttcagctcccagcagctggtccacatcacgattatc
aacctgtttgagctgcaccatctgagggactttggcaacgaagcagatgaccagagcttc
agctccgatgagcaaatcggctggttccaacttctcggcctcttcatgtcatttctgggt
atcatgtgtagccaagcattactgaataagaaccgaggagaggagatcatgggagaatgc
ccactgccggccatcaaggtgtctctggactggctcaaactgcgatccactgtttttcag
gacagtgctgtgaacaaacgacagtatgtttggccttggctggtgtccattctgaacagt
ttccaaccgaaggaagatgatgtttcctgtgcatcagtgactccacttccagaggagttt
gaactgcaggggtttctggctctccggccagctctacggatccttgacttcactaaaggc
caccagggcgttgctgtggacaaggagggtctgccagtccgtgcccgtcaccagaggctc
atcagtctagggaaatgggtggcagacaaccaaccagggctgattcagtacaagttcagc
gacagtctgctgttgttcatcactgacattgaggagctgacaattgaggagccccaggag
aaggatgcccctgtgctccaggagtcctccaatggagagcagactcccaacgagggcaac
atgggtctgaagtcagtcctatccatgggcaagacccagaacagtgtgttggagatcggc
gagagacccgtagtgactttcaaggagaacatcaagccccaggagcagagcagggagccc
agccgcaaccagcaccataaggatgcagggaaggaacggagggacttcggcaaaggtaac
ggagcgctgggaaaaggagagcagaagagggatggcaagaggaagagtgaggtgaagaag
aacagccatgagaaggctgcagatgcagggaaacaggtgaaagcccagccggagatgagg
acacccgtgtctgaggcccggaagactccagtcactcagacccagactacctgctcctcc
cagttcatccccatccaccacccgggagccttccctcccctgcccagccgaccaggtttc
ccttctccgtcttatgtgatccctcctcctgtggcgttctccatgaaccctggcttcacc
ttctctacaggcatgtctgtctccgggccattcctacagccggtctcccaccctcagcag
cctggcgcccagcaggtccaggtccaggctgggaagccgtcgcacattccatacagccag
cagaggccagcagggccgggggccatgaaccaggggcccccccagggccaacagggtcct
ccccagcagcagccctcccaggcccagcagtccatgcagcagtcggtgcagcttcaggct
ctggcccaacaacaacagcagcagtcgcccactaagcctgtgcagccagtacagctgggc
aaaagcccacctcaccatccagggatgcatcagcagtacatgcaggttgaccaggctggc
cagatgtggggccagcaccaggggcagcccaccatgcagaagatgcaggccatgcaggtg
cctgtcaagcagccctactatggcatgccaccccaggactccctgaagcttttcgagcaa
caccctgtgcaaactgttgggcaaatgcccatgcagccacagcagcagaacagcatggac
aagaagatgaagtacccggatgtgaaaatgcaggatttttactgggagcttccctaccgc
atgggggataacagacagacggtggtggagaggatgggcaagcggccgcccccaggggtc
ttccacccagaccaggacaacgcacccagaggacctccctttgaggacaacaagagctcc
cctcttctgcctccagaccttttaaaaagtctatcaaattttgaggaggaagagctggtc
tttactaagcctcatggtttctaccaggccttggcgagtcctcttagcactgctccagga
agaaacctattttccagaatggagagtggtgctgaggtgatgggccagtcgtcttctctc
atgcccttatctgggtttccaattcaggagagttcctatcaaaacagcattttcagccag
gcgtatgggaaaaacatgtctcccaaccccaagcctgatgctcccatgctgcaccaggaa
ccttctctgtactccctgtttgaaggaactccatggtccccgtcccttcccgccagctca
gatcactctacaccagcaagccagtcccctcactcttccaacccaagcagtttaccatct
tccccacccacacacaaccacggctccatccccttctctaacttcggccccataggaacg
cccgacagccgagacaggaggatggtcgaccgctggaagttggaaaaaactggagctgtg
agtgggtttggtttggactacctgcctgctgtgtcatcctctacagatcaccgagccccc
gagaacagctggcaccagggaaacgcccccagcagctcctgggcggcccaggagtcgccc
atggaagactcctccactgtgctccttgacagtctgaagtccatctggtccagctcaatg
atgcagccggggccgtcggctttggagcagctcctcatgcagcagaagcagaagcagcag
aggggccacggcaccatgaaccctccacactga
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