Oncorhynchus tshawytscha (Chinook salmon): 112260458
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Entry
112260458 CDS
T05605
Name
(RefSeq) tenascin-R isoform X1
KO
K06252
tenascin
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04510
Focal adhesion
otw04512
ECM-receptor interaction
otw04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
112260458
04518 Integrin signaling
112260458
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
112260458
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
otw00536
]
112260458
Glycosaminoglycan binding proteins [BR:
otw00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
112260458
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
fn3
Fibrinogen_C
EGF_TEN
EGF_Teneurin
FN3_DSCAM-DSCAML_C
Fn3_Dep-1_3rd
Pur_ac_phosph_N
FN3_Tor_3rd
Fn3_Dep-1_2nd
EGF_Tenascin
Fn3_VIN3
EGF_2
Interfer-bind
DUF4998
Fn3_Dep-1_1st
DUF7949
Motif
Other DBs
NCBI-GeneID:
112260458
NCBI-ProteinID:
XP_024291360
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All DBs
Position
LG10:55444767..55571503
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AA seq
1380 aa
AA seq
DB search
MVLMLWCFTMAPARGWLLGLALALLLLGSQPAPSLSSEEQKLVRTTRVRRQAPPGGPTSP
LNNQTVKEQPMVFNHVYNINVPLESLCSVDLESAAAPPSQASRGAMSSGGGEDPTEFTEQ
TVDTDSQVTFTHRINIPKQACACPAANSMQQLATRIEMLEREVSLLRVQCSSGNCGCEES
SAMGRLDFIPQCSGHGSFNMDLCGCVCEYGWTGKNCSEPRCPDDCSGQGECMEGECVCDR
DFGGDNCSEPRCPADCSGRGLCMDGECICEENFTGEDCTLGRCLNDCSDQGLCTNGTCQC
RPGYVGEDCSLAYCANNCSQKGICKEGFCACQEGFAGDDCSLVAPDLNLRVRGVTERTID
LEWEGSVLMTDYLVTYVATSPGGVQLEIRVPGNTTTCSIPDLEPGIEYNINVYAVLNNII
SVPANAQVSTYLSNPDGLVFKSITETAVEVQWQPFYYSFDGWEISFIPKDNDGGMTAQLP
STITSFHQTGLRPGEEYTVNLVALRDQGRSQPVSAIVTTLIDGPTQLIVRDVSDTVAFVE
WTNPKAKIDQIVLRYGLVGGDGPKTTFRLQPTLSQYSLQVLRPGSRYEVSISGVRKGNES
GTISTEFSTVLLFLSEIDAPKNLQVLSKASTTLELEWDNSEVEVEGYQVVYSTLAGDRYD
KVIVPRNDGPTSRTTLTDLLPGTEYGIGISAMLGTNRSSPATMNARTGLDVPMDLTVTAS
TDNTITLLWGVVQGPIDHYMVTYTSSSGLTMEVTVPKDVTTTTLDDLEPGTEYTITVAAQ
RGRQQSTAATIDAFTGFSPVIALYLSDITWDSVTVAWSAPAPPADLYILSYSSEDGTDTS
KVTLDGSKTRSSVEGLLPSTQYTVSLITIQGEVTSEAVTATLTTGMDPPKEMTVSYVTED
SVIISWLRPFAPFDYYKMSYQSARGRVDSIVIDNDVTNYTMSSLHPATEYEINLNAVRGS
QESKSITTSVFTAMDMPMELTALNITPQGALLQWNPPLSSVDNYVLTLTCNQVTADTFLV
DGGKQEHQLTKLLPSTTYSVALYATKGPLTSGTVIANFATPMDAPLNLTASEVNHRSALI
SWQPPIADIDNYMLTYKSADGSRKELILDAEDTWIRLEGLAEITEYTVRLQAARGLETSD
IISTAFTTGNRLFATPQNCAQHLLNGESVSGVYTIYINRDANQGVQVYCDMTTDEGGWIV
FQRRQNGLTDFSRKWSDYRVGFGNLEDEFWLGLDNIQKLAAQGRYELRIDMKDGQESVYA
NYDKFAIGDARNLYKLRIGEYNGTAGDALIYHQGRPFSTKDRDNDIAVTNCALSYKGAWW
YKNCHRANLNGKYGESRHSQGINWHNWKGHEFSIPFVEMKMRPFNYRSISGKRRRSTPPE
NT seq
4143 nt
NT seq
+upstream
nt +downstream
nt
atggttctaatgctgtggtgtttcaccatggcccctgcacgtggctggctgctgggcctg
gctctggctttactccttctggggtcccagcctgctccatccctatccagtgaggagcag
aagctggtccggaccaccagggtcagacgacaggcccctccaggtggccccaccagccca
cttaacaaccagacagtcaaggagcagcccatggtcttcaaccatgtgtacaacatcaat
gttcccctggagtctctgtgctctgtggatcttgaatcagcagcggctccacccagtcag
gcttccaggggagcaatgtccagtgggggtggggaggaccccacagagttcacagagcag
acagtggacacagacagccaggtcaccttcacccaccgcatcaacatccccaaacaggcc
tgcgcctgtcccgcagccaacagcatgcagcagctggccacccgcatcgagatgctggag
agagaggtgtcgctgctcagagttcagtgcagctctggcaactgtggctgtgaggagagt
tcagccatgggtcgcctggacttcatcccccagtgcagtggccacggcagcttcaacatg
gacctgtgtggctgtgtgtgtgagtacggctggacgggcaagaactgctctgagccacgc
tgcccagacgactgctccggacagggagagtgtatggagggcgagtgtgtctgtgaccgc
gacttcggaggggacaactgctcggagccccgctgccctgcggactgctccggtcgaggg
ctgtgcatggacggggagtgtatatgtgaggagaatttcactggagaggactgtacgctt
ggtcgctgcctcaatgactgctctgaccagggcctgtgcaccaatgggacctgccagtgt
cgcccgggatatgtgggagaagactgctctctggcctactgcgccaacaactgtagtcag
aagggcatctgtaaggagggcttctgtgcctgccaagagggcttcgctggagacgactgc
tctttagtggctccggatctgaatctgcgtgtgcggggagtgacagagcgtaccattgac
ctggagtgggaggggtcggtgttgatgacagactacctagtcacctacgtggccaccagc
ccaggtggggtccagctggagatcagggtccctgggaacaccaccacctgcagtattcca
gacctggagcctggcatcgagtacaacatcaacgtctatgctgtgctcaacaacatcatc
agtgttcctgccaatgctcaggtgtcaacctatctctcaaatccagacggtttagtcttc
aaatccatcacagagacggccgtggaggtgcagtggcaaccgttctactactcgtttgat
ggctgggaaataagcttcattccaaaggacaatgatggagggatgacagcccagctgccc
agcaccattacttcattccaccagacaggactgagaccaggggaggagtacaccgtcaac
ctggtagctctcagggaccagggccgcagccagcccgtatccgccatcgtcaccacattg
attgatgggccgactcagctgatagtgcgtgacgtctcggacacggtggccttcgtggag
tggaccaatcccaaggctaagatcgaccagatagtactgcgttatggcctggtggggggt
gacgggcctaagaccaccttccgtctgcagcccaccctcagccagtactccctgcaggtg
ctgagaccaggctcgcgttacgaggtgtccatcagtggtgttcgcaagggcaatgagagt
ggaaccatctccacagaattcagtaccgttctgttgttcctctcagagatcgacgcaccc
aagaacctgcaggtgctgtccaaggcctccaccaccctggagctggaatgggacaacagc
gaggtggaagtagaggggtaccaggtggtctacagcaccctggcaggggaccggtatgat
aaggtcatcgttccacgcaacgatggacccaccagcagaaccacactcactgacctgttg
ccaggtacagaatatggcattggtatttcggccatgcttggcaccaaccggagttctccc
gccacaatgaacgccagaactggtctagatgtccccatggacctgactgtgacagcgtcc
acagacaacaccatcaccctgctgtggggggtggtccaggggcctatcgaccactacatg
gtcacctacacctcctcatctggactgaccatggaggttactgtccccaaggacgtgacc
accaccactctcgatgacctggagccaggcacagaatacaccatcactgtagctgcccag
agaggcaggcagcagagcactgcagccaccatcgatgccttcacaggcttcagccctgtc
attgctctctacttgtctgacatcacgtgggactcggtgacggtggcatggagcgccccg
gccccacccgcagacctctacatcctcagctacagctctgaggacggcactgacacctcc
aaggtcaccctggatggatccaagacccggtcctctgtggagggtctcctgccctccaca
cagtatacagtcagccttatcaccatacagggagaggtgacgtctgaagctgtcacagcc
acgctcaccacaggaatggacccacctaaagagatgactgtgtcatatgtcactgaagac
tctgtcatcatatcatggttgagaccttttgccccctttgactattacaagatgtcctac
caatcagcaagagggcgagtggacagcatcgtgattgacaacgacgtgaccaactacacc
atgtccagcctccacccggcaacagagtatgagatcaacctgaatgccgtgaggggaagc
caggaaagcaagtccatcaccaccagtgtcttcacagcgatggacatgccaatggaactg
acagccctcaacattaccccacaaggagctttattgcagtggaaccctcctctgtccagc
gttgacaactacgtgctcaccctcacctgcaaccaggtgacagctgacaccttcctggtg
gatggtgggaaacaggagcaccagctcactaagctcttgcctagcaccacttactctgta
gccctctatgctaccaagggacccctgaccagtggaacggtcatcgccaactttgcaaca
cccatggacgctcctttgaacctgaccgccagtgaggtgaaccaccgcagtgccctcatc
tcctggcaaccgcccatcgcagacatagacaactacatgcttacatacaaatcagccgat
ggcagcagaaaggagctgatcctggatgcagaagacacgtggatccgtctggagggcctg
gcagagatcacagaatacactgtgaggttgcaggctgccagaggattagagaccagcgat
atcatctctacagccttcacaacaggaaaccgtctgtttgccacccctcagaactgtgcc
cagcatctgctgaacggggagtccgtgagcggcgtctacaccatttacatcaacagagac
gccaatcagggagtgcaggtctactgtgatatgaccacagacgaaggaggctggatcgtg
ttccaacgtcgtcagaatggccttaccgacttctccaggaagtggagtgactacagggtc
ggctttgggaacctagaggatgaattctggctcggtttggacaacatacagaagcttgca
gctcaaggtcgctacgagctccggatcgacatgaaggatggccaggagtctgtctatgcc
aactatgacaaattcgccatcggtgatgccaggaatttatacaaactcaggataggagag
tataatggcacagctggggatgcactgatctatcaccaaggccgtcccttctccaccaag
gacagagacaatgacattgctgtgaccaactgtgctctgtcctacaaaggagcctggtgg
tacaaaaactgccatcgggccaacctgaatggaaaatatggcgagtcgagacacagtcag
ggtatcaactggcataactggaagggtcatgagttctctatcccattcgtagagatgaag
atgaggccatttaactaccgcagcatcagtggcaagcgaaggaggtccactcctccagaa
taa
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integrated database retrieval system
