Oncorhynchus tshawytscha (Chinook salmon): 112260463
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Entry
112260463 CDS
T05605
Symbol
ptch2
Name
(RefSeq) protein patched homolog 1
KO
K11101
patched 2
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04340
Hedgehog signaling pathway
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
112260463 (ptch2)
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GFIT
Motif
Pfam:
Sterol-sensing
TRA2_N
Patched
Motif
Other DBs
NCBI-GeneID:
112260463
NCBI-ProteinID:
XP_024291368
LinkDB
All DBs
Position
LG10:55823566..55854891
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AA seq
1454 aa
AA seq
DB search
MASDPRVPGAGVFGDLPPSYTRSPPRVNSDLLRRPSYCHAAFALKQISKGTAVGQKAPLW
IRARFQALLFSLGCHIQRHCGKVLFIGLLVFGALSVGLRVAAIETDIEQLWVEAGSRVSR
ELRYTKEKQGEESVFTSQMLIQTPKQEGTNILTQDALLLHLEAALSASKVQVSLFGKSWD
LNKICYKSGVPIIENVMIERMIDKLFPCMIVTPLDCFWEGAKLQGGSAYLPGMPDIQWMN
LDPLKLMEELSQFTSLEGFREMLDKAQVGHAYMNRPCLDPNDSDCPLSAPNKDLRESPDI
SGQLQGGCYGFSKKFMHWQEELILGGRVKDTQNALQSAEALQTMFLLMSPKQLYEHFKDD
YEIHDINWNEDKATAILESWQRKFVEVAHGSIPQNSTSEIHAFSTTTLNDIMKSFSDVSV
IRVAGGYLLMLAYACATMLRWDCAKSQGAVGLAGVLLVALSVAAGLGLCSLLGLSFNAAT
TQVLPFLALGIGVDDMFLLAHSFTETGINIPFKERTGDCLRRTGTSVALTSINNMIAFFM
AALVPIPALRAFSLQAAIIVVFNFAMVLLIFPAILSLDLHRREVKRLDILCCFYSPCSSR
VIQIQPQEFSDANDNTTHSHAPGAQTTTTYTGSTITTSTQITTTVQAFTQCDAAGQHIVT
ILPPTSQISTSPPSVVVATSPAPPSPTDPYGSQLFTPSSSTRDLLAQMDESKEARECVPL
PFFRWNLSSFARDKYAPLLLKPESKVVVVVLFVTLLGLSLYGTTMVHDGLYLTDIVPRDT
KEYDFINAQFKYFSFYNMYLVTMDGFDYARSQRLLIQLHNSFTSVKYVVRDSDQQLPRMW
LHYFQDWLRGLQAAFDADWEAGRITWDNYRNGTEDGVLAYKLLIQTGSKKDPFNYNQLTS
RRLVDEDGLIHPDVFYIYLTVWVSNDPLGYAASQGNFYPHPREWIHDKYDTTGENLRIPA
AEPLEFAQFPFYLNGLRQASDFIEGIESVRTICEEFTRKGVLNYPNGYPFLFWEQYIGLR
HWFLLAVSVVLACTFLVCAILLLNPWTAGIIVFILAMMTVELFGIMGLIGIKLSAIPVVI
LIASVGIGVEFTVHIALAFLTAVGNRNRRSAVALEHMFAPVIDGAISTLLGVLMLAGSEF
DFILRYFFAVLAILTVLGILNGLVLLPVLLSLMGPPPEVTPSDNGSCLSPEPLSPPMTHH
GYYAGHGPLSPRQQAFSESSESECYSETTTTSGIGEEYKYGDRSPYITPPTSHILLEASK
NPSFPKLTVVKPFQGNQSVTAQKELLNESFPNAVNSVSSQLKQWDNKHDYNSDQGPRRQH
LPSDRTQGPGRTNHCGPRSQTHKGPHQNRTKMPAYNGGTVPSSAVTTMVTATASVTVAVH
PSVPGAYQGYMHEGYEDSESDCFEDTKRTSQSCGKAPQSSKRESLELQDLESVQNHYQAN
LAQGGPWIQAAKDC
NT seq
4365 nt
NT seq
+upstream
nt +downstream
nt
atggcctcggatcccagagtcccaggggccggtgtttttggagatttacccccaagttat
acacgttctccgccgcgagtaaactcagatcttctccggagacccagttactgccacgct
gctttcgcattaaaacagatttctaaggggacggctgtgggtcagaaagccccgttgtgg
attcgggcgaggttccaggctcttctcttttctttgggctgtcacatccagcgacattgt
ggaaaggtccttttcattggactgcttgtgttcggtgccttgtctgtgggtttgcgggtt
gctgccattgagacggacattgagcaactatgggtggaagccggtagccgagtgagtcgg
gagctgcgctacaccaaggagaagcaaggagaggagtctgtgttcacgtcgcagatgctc
atacaaacccccaaacaggaaggaactaacattctaacccaggatgctttgctgcttcac
ctggaggcagcgctctcggccagcaaggtccaagtgtctctgtttggaaaatcatgggat
cttaataaaatatgctacaaatctggagtccctatcatagaaaatgtcatgattgaaagg
atgattgacaagctgttcccctgtatgattgttaccccactggactgtttctgggaaggt
gcaaagctccagggggggtcagcatacttaccggggatgccggacatccagtggatgaac
ctggaccctctgaagctgatggaggagctcagccagtttaccagtttggagggcttcagg
gagatgctggacaaggcccaggtgggccacgcctacatgaaccgcccctgcctggacccc
aatgactccgactgccccctcagcgcacccaacaaggacctgagagagagtcctgacatt
tctgggcagctccaaggtggttgctacggcttctccaaaaagttcatgcactggcaggag
gagctgatcctgggcggtcgggtcaaggacacccagaatgctttgcaaagtgcggaggca
ctccagaccatgtttctcctgatgagccccaagcagctctacgaacactttaaggacgac
tatgagatccatgacatcaactggaacgaggacaaggccaccgccatcctggagtcctgg
cagaggaagttcgtggaggtggctcatggcagtatcccccagaactccacttcagagatc
cacgccttctccaccaccaccctcaacgacatcatgaagtccttctctgatgtcagtgtc
attcgggtggctggaggctacctgctcatgctggcctatgcctgtgcgaccatgctccgt
tgggactgtgccaagtcccagggggccgtggggctggctggtgtgctcctggtggctctg
tctgtggcagctggcctggggctgtgctctctgctgggcctgtcctttaacgctgccacc
acacaggttctccccttcctggctctggggatcggtgtggatgacatgttccttctggcc
cactccttcactgagactggcatcaacatcccctttaaggagagaacgggggactgcctg
aggaggactggcaccagcgtggcgctcacctccatcaacaacatgatcgccttcttcatg
gcagccctggtccccatcccagcactgcgcgccttctctctgcaggcggccattattgtg
gtgttcaacttcgccatggtgcttcttatcttcccggccatcctgagtttggacctgcac
cgtcgggaggtcaaacgtctggacatcctgtgttgtttctacagcccctgctcctcccgg
gtcatccagatccaaccccaggagttctccgatgccaacgacaacaccacccatagccac
gcgcctggcgcccagactacaacgacctacacaggctccaccatcaccactagcacccag
atcaccaccaccgtccaggccttcacccagtgcgacgctgcgggccagcacatagtcacc
atcctgccccccacctcccagatctccaccagccctccatctgtggtggtggccacctcc
cccgctcccccttcccccaccgacccctacggctcccagctcttcaccccctccagctcc
acccgggacctcctggcccagatggacgagtccaaggaggccagggagtgtgttcctctc
cccttcttccgctggaacctgtcaagcttcgcccgggacaagtacgctcctctcctccta
aagccagagagcaaggtggtggtcgtggtcctcttcgtgactctgctggggctcagcttg
tacggaaccaccatggttcatgacggactctacctgaccgacattgtgccccgcgacacc
aaggagtacgacttcatcaacgcccagttcaagtacttctctttctacaacatgtacctg
gtgaccatggacggctttgactacgcccgctcccagcgtctcctcatccagctgcacaac
tccttcacctcggtcaagtacgtggtgagggacagcgaccagcagctaccccggatgtgg
ctgcactattttcaggactggctaagaggactgcaggctgccttcgatgcagactgggag
gcaggcaggatcacctgggataactaccgtaatggcactgaggatggtgttctggcctac
aaactgctcatccagaccggctccaagaaggaccccttcaactacaaccagctgacttcg
cgtcgtctggtggatgaggacggtctaattcacccagacgtcttctatatctacctgact
gtgtgggtgagcaacgaccccctgggctatgctgcctctcagggtaacttctaccctcac
ccccgtgagtggatccacgacaagtacgataccaccggagagaacctgcgcatccctgcc
gcagagcccctggagtttgcccagttccccttctacctgaacggcctgaggcaggcatcc
gacttcattgagggtattgagagcgtgcgcaccatctgcgaggagttcacccgtaaaggc
gtgctcaactaccccaacgggtaccccttcctgttctgggagcagtacatcggcctgcga
cactggttcctcctggcggtcagcgtggtgctagcctgcaccttcctggtctgtgccatc
ctcctgctcaacccctggaccgctggcatcattgtcttcatcctggccatgatgacggtg
gagctcttcggtatcatgggcctgatcggcatcaaactcagtgccatcccagtggtcatc
ctcatcgcctctgtaggcatcggcgttgaattcaccgtccatatcgcactggcctttctg
acggccgtagggaataggaacaggcgttctgcggtggccctggagcacatgtttgcccct
gtgattgacggggccatctctactttgctgggagtcctaatgctggctggctccgagttt
gacttcatcctgaggtacttctttgcggtgctggctatcctgaccgtgctggggatcctg
aatggactggtgctgctacccgtgctgctctccctcatgggcccacccccggaggtcacc
ccgtccgacaatggcagctgcctgtcgccggagcccctctcccctcccatgacccaccac
ggctactacgcgggacacggcccactcagcccgcgtcaacaggccttctcagagtcctcc
gagtcagagtgctactctgagacgactaccacgtcagggataggggaggagtacaagtac
ggtgaccgcagtccttacatcacccctcctacctcccacatactgctggaggccagcaag
aaccccagcttccccaagctcacggtggtgaaaccgttccaagggaaccaatctgtaact
gctcagaaagaactcttaaatgaatcttttccgaatgcggttaactcggtcagctctcaa
ctcaagcagtgggataacaaacatgattacaattctgaccagggacccaggaggcaacat
ttacccagtgacaggacccaaggtcctgggaggactaatcactgtggtcccaggtctcag
acacacaaagggcctcatcagaacaggactaagatgccggcctataatggcggtaccgtg
cccagtagtgctgttactaccatggttacggccacggcctcggtgactgtggcggtgcac
cccagcgtgccgggggcctaccagggttacatgcatgagggctacgaggacagtgaatca
gactgttttgaggacactaagaggacttcacaatcttgtgggaaagctccccaatcttcc
aagcgtgaatccttggagcttcaagacctggaatctgtacagaaccactatcaggcaaac
ctggcacaaggtggcccatggatccaggcagccaaagattgctag
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