KEGG   Oncorhynchus tshawytscha (Chinook salmon): 112260551
Entry
112260551         CDS       T05605                                 
Name
(RefSeq) vacuolar protein sorting-associated protein 4B isoform X1
  KO
K12196  vacuolar protein-sorting-associated protein 4
Organism
otw  Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03250  Viral life cycle - HIV-1
otw04144  Endocytosis
otw04217  Necroptosis
Brite
KEGG Orthology (KO) [BR:otw00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    112260551
 09140 Cellular Processes
  09141 Transport and catabolism
   04144 Endocytosis
    112260551
  09143 Cell growth and death
   04217 Necroptosis
    112260551
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:otw04131]
    112260551
   03400 DNA repair and recombination proteins [BR:otw03400]
    112260551
Membrane trafficking [BR:otw04131]
 Endosome - Lysosome transport
  Endosomal sorting complexes required for transport (ESCRT)
   ESCRT-III complex
    112260551
DNA repair and recombination proteins [BR:otw03400]
 Eukaryotic type
  Check point factors
   Other check point factors
    112260551
SSDB
Motif
Pfam: MIT AAA Vps4_C AAA_lid_3 AAA_5 TIP49 AAA_16 AAA_14 AAA_22 RuvB_N IstB_IS21 AAA_25 AAA_18 DUF815 AAA_2 AAA_33 AAA_17 RNA_helicase nSTAND3 AAA_24 PhoH TPR_1 Mg_chelatase AAA_7 Parvo_NS1 ResIII NACHT Sigma54_activat AAA_28 TPR_2 bpMoxR DUF5906
Other DBs
NCBI-GeneID: 112260551
NCBI-ProteinID: XP_024291521
LinkDB
Position
LG10:complement(59811703..59847016)
AA seq 527 aa
MKLPMEPTNLQKAIAVAQKASQEDQAGNYQEAIKSYQHAVKYFLHIVKCQPQGKEGNQKI
RDKCKLYLDRVEELQEYLEKKEVGSQPTINPTEEEYKKAIDLASKAAQEDKAQNYDEALR
LYQHAVQYFLHVVKYEAQGDKAKQSIRAKCAEYLDRAEKLKDYLKKKEKAPPAKPVKESQ
ADDKGNESDEGDDPEKKKFQNQLSGAIVMEKPNIKWNDVAGLEGAKEALKEAVILPIKFP
HLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVK
NLFTLAREHKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGNDNDGVLVLGA
TNIPWTLDSAIRRRFEKRIYIPLPEEHARTFMFKLHLGTTPTSLNDSDFVTLGKKTDGYS
GADISVIVRDALMQPVRKVQSATHFKRVRGPLRDNPKILVDDFLTPCSPGDPNGVEMTWM
EVPGEKLCEPVVCMSDMLRSLSSTKPTVNDHDLDKLRKFTDDFGQEG
NT seq 1584 nt   +upstreamnt  +downstreamnt
atgaaacttcccatggagccaacaaatctacagaaagctatcgctgtagcacagaaagcc
tcccaagaggaccaggctgggaactaccaggaggctatcaaatcttaccaacatgctgtc
aagtacttcctgcacattgtaaaatgtcaaccacagggtaaagagggcaaccagaagatc
agggacaagtgcaaactgtacctggacagagtggaagaactacaggagtatctagaaaag
aaagaggttggatcccaaccaacaataaaccccactgaagaagaatacaagaaagccata
gatctggccagcaaggcagcccaggaggataaagctcagaactacgacgaggccctgcgt
ctataccaacacgctgttcagtacttcctacacgtagtaaaatatgaagcccagggtgac
aaagccaaacagagcatcagggccaagtgtgctgagtaccttgacagagcagagaagctc
aaagattatctgaagaagaaagagaaggctccacccgccaagcctgtgaaggagtcccaa
gctgacgacaaaggaaatgagagcgatgaaggagatgacccagagaaaaagaagttccaa
aaccaactttcaggcgccatcgttatggaaaagccaaacatcaagtggaatgatgttgcc
ggtttagagggagccaaagaggcactgaaagaagctgttattttgccaattaaattccca
catcttttcacaggtaaaagaacgccatggagggggatcctgctctttggtcctcctggt
acaggaaagtcctacctggctaaagctgtggccacagaggccaacaactccacctttttc
tctatctcctcctctgacctggtgtccaagtggctgggagagagtgaaaagttagtaaag
aatttgttcactcttgcacgggagcacaaaccctccatcatcttcatagatgagatagac
tcactgtgcggctccaggagtgagaacgagagtgaggcagctcgccgcatcaagacagag
tttctggttcagatgcagggagtggggaatgacaacgatggggtactggtattaggggcc
accaacatcccttggacattggactctgccatcagaagacggtttgagaagaggatctac
atccccctgccagaggaacacgcccgcaccttcatgttcaagctccacctaggcaccacc
cccaccagcctcaacgactctgactttgtcaccctcggaaagaagacagacgggtactcg
ggggccgacatcagcgtcatcgtcagagatgcgcttatgcagcccgtcaggaaagttcaa
tcagccactcacttcaaacgggtacgagggccattgagagacaaccccaaaatcctggta
gatgactttttgaccccgtgctccccgggagacccgaacggcgtcgagatgacatggatg
gaggtccctggggaaaagctgtgtgagccagtcgtttgtatgtctgacatgctgaggtcc
ctgtccagcacgaagccaactgtcaatgatcatgatttggacaaactgagaaaattcaca
gatgactttggacaggagggctaa

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