Oncorhynchus tshawytscha (Chinook salmon): 112260618
Help
Entry
112260618 CDS
T05605
Name
(RefSeq) RB1-inducible coiled-coil protein 1-like isoform X1
KO
K17589
RB1-inducible coiled-coil protein 1
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
112260618
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
otw01009
]
112260618
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112260618
03029 Mitochondrial biogenesis [BR:
otw03029
]
112260618
Protein phosphatases and associated proteins [BR:
otw01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
112260618
Membrane trafficking [BR:
otw04131
]
Autophagy
Autophagosome formation proteins
ULK complex
112260618
Mitochondrial biogenesis [BR:
otw03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-independent mechanism factors
112260618
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATG11
TBK1_ULD
ubiquitin
Motif
Other DBs
NCBI-GeneID:
112260618
NCBI-ProteinID:
XP_042184776
LinkDB
All DBs
Position
LG10:complement(63464802..63496475)
Genome browser
AA seq
1649 aa
AA seq
DB search
MKLYVFQVNNGSTLTFDTELAVQTVLDLKHAIQVKYKIATQHQVLVVNGGECMVAERRVC
SYSAGTDTNPIFLFNKEMILCDRAPTIPKTTFSIENEMELKVEESLMMPAVFHTVASRTQ
LAVEMFEVAKKLSSFCERLVHDEHLQHQGWAAIMANLDDCTLSYQKLLWKFDTAYMNYQQ
DFEDIKLKLTKLGTAVSVMAKIPLLECLTRHSYRECLEKSCSTPAKDSDETEEEKSTDSV
LCATPTETQRSSTKLPTSVCAPGAGGSPDTAQAQEGSEMTDSSGLRAALQEADSPERANP
PSFNVTLLDWINVQDRPNDVESVVRKCFDSINRLDPRIIQPFLSECRDTIAKLDNQNMKA
IKGLEDRLYALDQMIASCNKLVNEQKELAQGFLANQKRAENLKDTSVLPDLCLSHANQLM
IMLTNHRKLLDIKQKCTTAKQELANNLQVRLKWCCYVMLHADQDGEKLQALLRLLTELME
RVRVVDALSTVPQMYCLAVVEVVRRKIFIGHYREWACALVKNGKRLYETEKCKRETFGKL
FRKSFLRNRLFRGLDSWPPTSFCTRKPRKFDFELPDISLGDLQYLKTCCPTEVQPFLRLP
TLCDFEPLHQHVEMLQQLVLATQAASVDEMSRTITDLLSEQRVSCSQSAQRSTAAVTPLT
TRSNSTPGTTFTSSMTPSSLSLPGPLCQPLPGHGPTTLEDLSPDSIDAQTFDFETIGHPN
MDPVLQQAGSLDLDSLAESPESDFMSAVNEFVIENSPTPISDPTSPGMMVESLYSSVINA
IDSKRMHDTTTLERENSKMAALKLSMEKYRTAAEESQTNLRSVKDDLYCHRDLLLKEQRD
FGFALKTMTIEVRNMVDTIRKREEEEHQAELLSLQQDHENQLQALMEENQVNKNIVKDVQ
RAMLELEGLLEHKKKELTQLEVEREDWAEAQNGHTQTARVLKQKISDQAQEVQTLAASRD
SLAASRDSLASQLETLHIEIERGQQKIRQELEGAQQSHLQELEERMRHQHQAQLDTLARE
NQDALEHLATENRAKLSEVTDLHTATLTERDCQLRDLEARVIELADLRCKLEVELALKES
ETEEVRLLYEEAKQGQQEANVGKATVEAETQSLSEQLAQVNRQLQARNEEYETDLAELRR
MMEKDQCISELVDRHEEERNQLHRELNALQQQTLDTERSRVEQLQNLQRDLDLQTVALCE
DKEKQRGSSEEQEQHLRTVICDLQVENDLLAKRIEQDTQTAQERLEKEKALKAAVPDDFK
DLKQQKEEMEKRLSDKIRQLECDLQERQSSEREAGLSEVQTEGRGSDAGAPLSLDSALQE
HLQQETASLHTQLELLERRKNEEMQNLKTSLIAEQQTNFNTVLTREKLKKEQIINDLTEK
LRKVTQQQEKDKGLIETLSEDRAIVMQEKKQLEEDLNRLRSTALVSSAYYSPNLLALEPT
GAGPGPGHCPGPGTEVEFGAGACYSVPFLDTDRPASVAATREDDKVDSAVEASMVTVHDN
ILMMSEEKQRILLLERTLHMKEEENKRLSQRLMSQSMSSVSSRHSEKIAIRDFQVGDLVL
IILDERHDNYVLFTVGPTLYFLHSESLTALDLKPDPMFTSASGASRRPWVLGKVMEKEYC
QAKKAQNRFKVPLGTKFYRVKAVSWNKKV
NT seq
4950 nt
NT seq
+upstream
nt +downstream
nt
atgaagttgtatgtattccaggtcaacaatggaagcactctgacatttgacacagaactt
gctgtccaaacagtgttggacctcaaacatgctatccaggtcaagtacaagattgcaacc
cagcatcaagtcctggttgtgaatggaggggagtgtatggttgcagagaggcgtgtctgc
agctacagtgctggcacggacaccaaccccatattcctgttcaacaaagagatgattttg
tgtgaccgggctccgactatcccgaaaaccaccttctctattgagaatgagatggagctc
aaggtggaagagtcactaatgatgccagcagtctttcacaccgttgcctcgcgaacacaa
cttgctgtggaaatgtttgaagttgccaagaaacttagctctttctgtgaacgcctggtt
catgatgaacacctccaacaccaaggctgggctgccatcatggccaacctggatgactgc
acgctgtcctatcagaagctactgtggaaatttgacacggcatacatgaattatcaacaa
gactttgaggatatcaaattgaaactgacaaaactggggacagcagtctcagtcatggcc
aagatccccctactggagtgtctgacccgccacagctacagagaatgtctagagaagtcc
tgctccactcctgccaaggactccgatgagaccgaggaggagaagtctactgactctgtg
ctctgcgccacccccaccgaaacacaaaggagctccaccaagttacctacgtcagtctgt
gctccgggggcggggggctcacccgacaccgcccaagcccaggaaggcagtgagatgact
gacagtagtgggctgagggcagctcttcaggaagcagactctccagagagggccaatccc
ccgtccttcaacgtcacactgctggactggatcaacgttcaagaccggcccaatgacgtg
gaatcagttgtgaggaaatgctttgactccatcaataggctcgacccacggatcattcaa
ccattcttgtcggaatgtcgagacacgatagccaaactggataatcagaacatgaaagcc
atcaaagggcttgaagacaggttatacgctctagaccaaatgatagcgagctgtaacaag
ttggtcaatgaacagaaggaacttgctcagggatttctggccaatcagaagcgtgccgag
aacctgaaggatacgtccgtgctgcctgacctgtgtcttagtcacgccaaccagctgatg
atcatgctgaccaaccaccggaagctgctggatatcaaacagaagtgcaccactgccaaa
caggaactggcgaacaacctacaagttcgactcaaatggtgctgctatgtgatgctgcac
gcggatcaggacggagagaagctgcaggccttgctgaggctgctgacagagctgatggag
agggtccgggtggtggacgccctcagcaccgtgcctcagatgtactgcctggctgtggtg
gaggtggtccgcaggaagatcttcataggccactacagagagtgggcctgtgctctcgtg
aagaatggaaaacgtctctatgagactgagaagtgtaaaagggaaacgtttggcaagttg
ttcaggaaatcttttctcagaaatcgcttgtttagaggacttgactcatggccccccact
tcattttgcacgcgaaagcccagaaagtttgactttgagcttccagatatttcccttggt
gacctgcagtacttaaagacctgttgtcctacagaggtgcagcctttcctcaggcttcca
acactgtgtgactttgagcctttgcaccagcacgtggagatgcttcagcagttggtgcta
gctactcaagctgccagtgtggacgagatgtctcgaactatcactgacttactgagcgaa
caaagggtgtcgtgcagccagagtgctcagagatccacggcagcggtgaccccgttaacc
acgcggtccaacagcaccccggggaccacctttacctcctccatgaccccatcctctctc
agtctcccgggcccactctgccagcccctccctggccacggccccaccacgctggaggac
ctgtccccagacagcatcgacgcccaaaccttcgactttgagaccattggccaccccaac
atggaccctgtcctgcagcaggccggttccctggacctggactccctggctgagagcccc
gagtcagacttcatgtcggcggtcaacgagtttgtgatcgaaaactcgcccacccccatc
agcgaccccaccagcccagggatgatggtggagtcgctgtactcttcggtcatcaacgcc
atcgacagcaagcgcatgcatgacaccaccactttagagagggagaactccaagatggcc
gctctaaagctgagcatggagaagtaccgcactgctgccgaggagtcccagaccaacctg
cggagcgtcaaggatgacctgtactgccacagagacctgctgctgaaggagcagcgagac
tttggcttcgccctgaagaccatgaccattgaggtgcgcaacatggtggacaccatccgt
aagagagaggaggaggagcaccaggccgagctcctctccctgcagcaggaccacgagaat
cagcttcaggccctgatggaagagaaccaggtcaacaagaacattgtgaaagacgtgcag
cgggccatgctggaactggaggggctgctggagcacaagaagaaggagctcacccagctg
gaggtcgagagagaggattgggccgaggcacagaacggacacactcaaacggccagggtc
ctaaagcagaagatcagcgatcaggcccaagaggtgcagaccctggctgcctccagagac
tccctggccgcctccagagactccctggccagccagctggagacgctgcacattgagatc
gagcgcggccagcagaagatccgccaggagctggagggggcccagcagtcccacctgcag
gagctggaggagaggatgaggcatcagcaccaggcccagctagataccctggcccgggag
aaccaggatgccctggagcatctggccacagagaacagggccaagctgagcgaggtcact
gacctgcacaccgccaccctgacagagagggactgccagctgagggacctggaggcccgg
gtcatcgagctggctgacctgcgctgcaagctggaggtggagctggccctgaaggagtct
gagacagaggaggtgaggctgctgtatgaggaggccaagcaggggcagcaggaggccaat
gtggggaaggccaccgtggaggctgagacccagtccctcagcgaacagctagcccaggtt
aacaggcagctgcaggccaggaacgaggaatacgagaccgacctggctgagctgaggagg
atgatggagaaggaccagtgtatctctgagttggtggacaggcacgaagaggagaggaac
caactccacagagagctgaacgccctgcagcagcagaccctggacactgagaggagccgt
gttgagcagctgcagaacctccagcgagacctcgacttgcagacagtggcactgtgcgaa
gataaggagaagcagcgggggagttctgaggagcaggaacaacacttaaggactgttatc
tgcgatttgcaggtggagaacgacctgctcgccaaaagaatagagcaggacacacaaaca
gcccaggaacgtttggagaaagagaaggccttgaaggctgctgtaccagatgactttaaa
gacttaaagcaacagaaggaggagatggagaaaagactgtcagacaaaattagacaactt
gaatgtgaccttcaggaaagacaatcctctgaaagagaggcagggttgtcggaggtacag
acagagggtcgggggtctgatgcaggggctcctctctccctggactctgcattgcaggag
catctgcagcaggagacagcctcgctgcacacccagctggagctcctggagaggaggaag
aacgaggagatgcagaacctcaagacctccctcattgcagaacaacagactaacttcaac
actgtgctgacgagagagaagctgaaaaaggaacagatcatcaatgatctgacagagaag
ctgcggaaggttacccagcaacaggagaaggacaaaggtttaatagagacactgtctgaa
gaccgggccatcgtcatgcaggagaagaagcagttggaggaggacctgaaccggctgcgc
agcaccgccctggtgtcctcggcctattacagccctaacctcttagctctggagccgact
ggagccgggcctggacctgggcattgtcctggtcctgggactgaagttgagtttggggct
ggagcctgctactcggttcccttccttgacacagacagaccggcctctgtggccgccacc
agagaggacgacaaggtggactcagctgtggaggccagtatggtgaccgtacacgataac
atcctgatgatgtccgaggagaaacagcggatactgttacttgagaggactttacatatg
aaggaagaggaaaacaagcgcctcagtcaaagactgatgtctcaaagcatgtcctcggtg
tcgtcacggcattcagagaaaatcgccatcagagatttccaggttggtgacttggttctg
atcatcctagatgaaaggcatgacaactatgtactgttcaccgtgggtcccaccctgtac
ttcctccactccgagtccctcacggccctggacctcaaaccagatcctatgtttacttca
gcatcaggagcctcaagacggccgtgggttcttggaaaagtgatggagaaggaatattgc
caggcgaaaaaggctcaaaaccggttcaaagttcctttgggcaccaagttctacagggtg
aaagctgtttcatggaacaagaaagtataa
DBGET
integrated database retrieval system
