Oncorhynchus tshawytscha (Chinook salmon): 112260745
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Entry
112260745 CDS
T05605
Name
(RefSeq) LIM domain-binding protein 3
KO
K19867
PDZ and LIM domain protein 5/6/7
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
112260745
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
otw04990
]
112260745
Domain-containing proteins not elsewhere classified [BR:
otw04990
]
LIM domain-containing proteins
PDZ-LIM family proteins
112260745
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
LIM
DUF4749
PDZ
PDZ_6
Motif
Other DBs
NCBI-GeneID:
112260745
NCBI-ProteinID:
XP_042184111
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All DBs
Position
LG01:complement(56265208..56337092)
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AA seq
841 aa
AA seq
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MSTYSISLSGSAPWGFRLQGGKDFNMPLTISRITPGSKAQQGNLVQGDIIVAIDGVSTEG
MTHLEAQNKIKCASFNLALTMQKSKRPALQSAIPRIDSPMQQIPHQKVIFNTPANNEYIP
NFNPNALKDTALSTHKPIEVKGPGGKATIIHAQYNTPISMYSQDAIMDAIAGQSQSKGHE
GGSLPVKDAQVDSASPVYQAVIKTADRDMELNDWARSSSQVQSKSFRLLAHITGTEFMQD
PDVEHLRKSREKFDTEFKGPRFAKLKSWHNGLSAQILNVPEKTLVYPAPVALPASAALPN
QVASPAASQSPEPAPVVPEPTPESEQPPPATQTQPVAPEAPAVPSGAPRHLTHAASHISS
ALITQSRNKVYKQGPPPTSALEALSITPVFRSSTLPKRKRTLPSGKPKHLSYSLQQSASG
YSSQYKSSVSSQYGQAPPMQQAPPMYQGQSMYQGQSMQQGQSMQQGQSMQQGPPMYQGPP
MQQGPPMYQGPPMHQAPHMQQPPHMQQPPHMQQPPHMQQPSHMQQPPHMQQSSIQIPVGP
PQPKVVSTACIVPAPAPIPPQAAAPEPPSSRPPWITDDSFANKFDPSKTTSTSMKVPALP
QSAPPAPAYIPHPGSAHTPHSAPSPAYNPSPAPYNPTPAPFNPVARGVAQRAERFAANSN
RAPLCGACNNMIRGPFLVALGRSWHPEEFNCHYCHTSLADCSFVEEQNAVYCENCYGEFF
APTCARCNTKIMGEVMHALRQTWHTTCFVCAACGKAFGNSLFHMEDGEPYCEKDYVSLFS
TKCHGCDFPVEAGDKFIEALGHTWHDTCFVCAVCNLNLEGQPFYSKKDKPLCKKHAHAIN
V
NT seq
2526 nt
NT seq
+upstream
nt +downstream
nt
atgagtacctacagcatttctctgagtgggtcggccccatggggcttccgattgcaggga
gggaaagatttcaacatgcccctgaccatctccaggatcacccctgggagcaaggcacag
cagggcaacctggtccagggtgacatcattgtggccatcgatggcgtcagcactgagggc
atgacccacctggaggcccagaacaagatcaagtgtgccagctttaacctggccctgacc
atgcagaagtcaaagcgcccagctctgcaaagtgccatcccaagaatcgactctcccatg
caacagatccctcaccagaaggttattttcaacactcctgccaacaacgagtacatcccc
aacttcaaccccaatgcactgaaggacactgccctgtccacccacaagcccatcgaggtg
aagggtcctgggggcaaggccaccatcatccatgcccagtacaacacccccattagcatg
tactcccaggacgccatcatggacgccatcgccggacagtcccagtccaagggccacgag
ggcggttcactccctgtaaaagacgctcaggtagacagtgcctccccagtgtatcaggct
gtcatcaagactgcagacagggacatggagttgaacgactgggcccgcagctcctcccag
gtgcagtccaagtccttccgcctcctcgcccacatcacgggaacggagttcatgcaagac
ccagacgtggaacatctgaggaaatcaagggaaaagtttgacacagaatttaaaggccca
cgttttgccaaattgaaaagttggcacaatggcctgtctgctcaaatccttaacgtgcca
gaaaaaaccctggtttaccccgcacctgtcgctctgcccgctagcgctgctttgcccaat
caggtggcttcacctgctgcttcgcagtctccagagcccgcccccgtagtccctgaaccc
acccctgagagcgagcagccacccccagccacccagacacagccagtggcccctgaggcc
cctgcagtcccctctggggcacctcgccacctgacgcatgcagcctcccatatctcgtct
gctttgattacacagtctagaaacaaggtttataagcaagggccaccgcccacctctgcg
ctggaggctctgtcaatcaccccagtgttccgaagcagcactttgcccaaacgaaagcgc
accctgccctctgggaaacccaagcacctgagctacagcctgcaacagtctgcctctggt
tacagctcccagtacaaatcctcagtctccagccaatatggccaggctccccccatgcaa
caagcccctcccatgtaccaggggcaatccatgtatcaggggcaatccatgcagcagggg
caatccatgcagcaggggcaatccatgcagcaggggcctcccatgtaccaagggcctccc
atgcagcagggacctcccatgtaccaggggccccccatgcaccaggccccgcatatgcag
cagcctcctcacatgcagcagcctccacacatgcagcagcctcctcacatgcagcagcct
tctcacatgcagcagcctcctcacatgcagcaaagctccatccagatccctgtgggccct
ccccaacccaaggtggtcagcaccgcctgcatcgtgccagctcctgcccctattccaccc
caagccgccgcccctgaacccccctccagcaggcccccctggatcactgacgactctttt
gcgaacaagtttgaccccagcaagacaaccagcaccagcatgaaagtgcctgctctacct
cagagtgccccaccagcaccggcctatatcccacaccctggctctgcccacacccctcac
tctgccccaagtcctgcctataacccaagccctgccccctacaaccccacccctgcccct
ttcaatcccgttgcccggggtgtggcccaaagggcggagcgcttcgctgccaacagcaac
agagcacccctctgtggagcctgcaacaacatgatcaggggacccttcctggtggccctg
ggtcgatcctggcacccagaggagttcaactgtcactactgccacacatcgctggcagac
tgcagctttgtggaggagcagaacgcagtgtactgtgagaactgctacggagagttcttt
gcccccacctgtgcccgctgcaacaccaagatcatgggggaggtgatgcatgctctgcgg
cagacatggcacaccacctgctttgtgtgtgctgcctgtggcaaggcctttggaaatagc
ctcttccacatggaggacggggagccctactgcgagaaagactacgtttcactcttcagc
accaagtgccatggctgtgacttcccagtagaagcgggagacaagttcattgaagcactg
ggtcatacttggcacgacacctgctttgtctgtgcggtgtgtaatttgaacctggagggc
cagcccttctactccaagaaggacaagccactgtgcaagaagcacgctcacgccatcaac
gtgtag
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