Oncorhynchus tshawytscha (Chinook salmon): 112260899
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Entry
112260899 CDS
T05605
Name
(RefSeq) LOW QUALITY PROTEIN: rho guanine nucleotide exchange factor 18
KO
K21066
A-kinase anchor protein 18
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
112260899
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112260899
Membrane trafficking [BR:
otw04131
]
Others
Rho GTPase associated proteins
Rho guanine nucleotide exchange factors (GEFs)
112260899
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PH_16
RhoGEF
PH
PH_13
ATP-grasp_4
BppL_N
Motif
Other DBs
NCBI-GeneID:
112260899
NCBI-ProteinID:
XP_042185023
LinkDB
All DBs
Position
LG10:complement(75608700..75655453)
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AA seq
1037 aa
AA seq
DB search
MDDLDAVRGLSPRPAPPPEDSVSLSTSSTDTINLEDGHYSALRAELEADARDLEGESWSV
AVDQQHINSLHQDAVKRQDVIYELIQTEVHHVRTLKLLLSVYQYELRHSLHMEDTRLERM
FPQIDSLLHIHQHFLWCLRDGRDRHNHHTVTQLGDILINQFSGEMGERMKESYGVFCSHH
TDAVSLYKEQLQNNKKFQNLIMKIGRLSIVRRLGVPECILLVTQRITKYPVLVERILLNT
EADSEEHSALVQALVLIKETISAVDSQVHDYERASRLREIGGRLEPRSHGRWKDGRVFTR
EDLAEGLRTLLHEGTVNCRVANGRLKDIHAVLLSDVLLLLQKEKDQKLIFANVDNKTSVI
SLQMLIVREMAHEDKAMFLISASSSMPEMYEIHTSSREDCNAWMSLIRDAVNSCPVMEEQ
MSNEQEEARLARLRDFQERLYVKDSQIMQSLTEKLQMFADMVEAVTGMEDVAAHSCLLLR
GDASDLQXGETLLKGAITEVENLQNLLLSGVTVRDPHPHPEDSLGPGRFSLRPEVVRLYL
GGLGLGRLGNLSVHRRAETFGGYDCNPPTPIKNVEGRPQRSKSDPQLQDLDQSESLELSF
FYAVLTLSHRLYGLQAIVSQQDSHIELQRASHLVRERPARNRGNMLLEQEKQRNLEKQRE
EVANFHKLQTQHRQNQARWEKERERHRLQAEVLEAELRQREEECRRLEKKLEMEREELER
QRETYQQDLERLRESMRTVEKQKEHLNTQMKQNKTVTNPGSFNFKAQQVPLSQSFRGDPP
LLSQSFRGDPSLSQSFRVDPSLSQSFRGDLPLSQSFRVDPSLSQSFRGDPPLLSQSFRGD
LTADWMKGREVIQIPKVLVPPSISVATNMFLEQPPEVPPRRESISPGPPKPEFPIHLIST
TNQVVHKPGAVQQQIPTKLAVLGNKGKEKSSKKRSHHKRNHSAASIEMSQLVPIRVTGNQ
SLRGKKTVSPQRNYQSDDFFSPPEPLSSAKPSQTLSSSSSMRTNNQSHIPPPKPPPPPPP
FPKDIASKPTKEHVIYL
NT seq
3114 nt
NT seq
+upstream
nt +downstream
nt
atggatgacctagatgctgtcagaggactgtctccccggcctgctcctcctcctgaggac
tcggtgtccctctccacgtcctccacagacaccatcaacttggaagatggccactactct
gccctgcgagcggagctggaggctgatgctcgggacttggagggagagtcctggagtgtt
gctgtggaccagcagcacataaacagcctccaccaagacgctgtaaagaggcaagatgtc
atctacgagttgatccagacagaggtgcatcatgtgcggaccctgaagctgctgctgagt
gtttaccagtatgagctgagacacagcctacatatggaggatactaggcttgagaggatg
ttccctcagatcgacagcctgctgcacatccaccaacacttcctgtggtgtctcagggac
ggccgggacagacacaaccaccacactgtcacacagctgggagatatactcatcaaccag
ttttcaggtgagatgggggagaggatgaaggagagttacggcgtgttctgtagtcaccac
actgacgctgtcagtctctacaaggaacagctacagaacaacaaaaagttccagaacttg
attatgaaaatcggtcggttgtccatcgttcggaggttaggagtaccagaatgcattctg
ttggtgactcagcggatcacaaagtaccccgtcctggtggaacgcattctactgaacact
gaagccgacagtgaggagcacagtgccctggtccaggccctggttctgatcaaagagacc
atctctgctgtggactcccaggtccatgactatgagagagcctccaggctgagagaaata
ggcggcaggctggagccgcgttcccatggtcggtggaaggacggcagggtgttcacgaga
gaggatctggctgagggcctcagaaccctgctccacgaggggacggtcaactgtcgggtg
gcaaacggacggctcaaagacatccacgctgttctgttgtcagatgtcctgctgctgtta
caaaaggaaaaggatcagaaactcatatttgctaatgtggacaacaagacgtcggtgatc
tccctccagatgctgatcgtcagggagatggcccatgaggacaaggctatgttcctgatc
agtgcttcgtccagcatgccagagatgtacgagatacacacctcctccagagaggactgc
aatgcctggatgagccttatacgagacgctgtcaacagttgtccagtaatggaggagcag
atgagcaatgagcaggaggaggccaggctagccaggctcagagacttccaagagcgtctg
tatgtgaaggattcccagatcatgcagagcctgacagagaagctgcagatgtttgctgac
atggtggaggctgtaacagggatggaggatgtagctgcccactcctgtctgctgctccgt
ggtgatgcctcagacctccagncaggggagacactgctcaagggagccatcactgaggtg
gagaatctgcagaaccttctcctgtccggtgtgactgtgcgagatccccacccccatcca
gaggacagcctgggaccagggaggttcagtttgaggccagaagtggtacggctttatcta
ggagggctaggccttgggcggctggggaacctgtcggtgcataggagagctgagaccttt
ggaggttacgactgcaaccctcccacccccatcaagaatgtggagggacgacctcaacgt
tcaaaatctgacccccagctacaggaccttgaccaatcagagagcctggaactgtcgttc
ttttacgctgtgctgacgctctcacataggctctacggtctgcaggccatcgtctcccag
caggacagccacattgagctccagcgtgcctctcatttggtgcgtgagcgtccggctcgc
aaccgaggcaacatgctactggagcaggagaaacaacgtaacctggagaaacagagagaa
gaggtggccaacttccacaagctgcagacacagcaccgtcaaaaccaggctcgctgggag
aaggagcgggagcgtcaccggctgcaggcggaggtcctagaggcggagctaagacagaga
gaggaggagtgtaggagactggagaaaaaactagagatggagagagaggagctggagaga
cagagagagacataccaacaggatctggagaggctgagggagtcaatgaggacggtggaa
aaacagaaggaacacctcaatacacagatgaagcagaacaagaccgtcaccaaccctggg
agttttaacttcaaagctcagcaggttcccctctcccagtccttccgaggggatcctccc
ctcctctcccagtccttccgaggggatccttccctctcccagtccttccgagtggatcct
tccctctcccagtccttccgaggtgatcttcccctctcccagtccttccgagtggatcct
tccctctcccagtccttccgaggggatcctcccctcctctcccagtccttccgaggggac
ctgacagctgattggatgaagggaagagaggtgatccagatccccaaggtccttgtcccc
cccagcatctctgtagccaccaacatgttcctggagcagcccccggaggtgccccctcgc
agggagagcatcagccccgggccccctaaaccggagttccccatccacctgatcagcaca
accaaccaggtggttcacaaaccaggggccgtgcaacagcagatacccaccaagctggct
gtccttggtaacaagggcaaggagaagagcagtaagaagaggtcccaccacaagcgcaat
cacagcgcagcgtccatagaaatgtctcagttggtgccgatcagagtgacaggaaatcag
agtctgagagggaagaagactgtgagcccacagagaaactaccaatcagatgatttcttc
agtcctccagagcccctgtccagcgctaagccctcccagaccctgtcgtccagcagcagc
atgaggaccaataaccagagccacatccctccacccaaacctccacctccccctccaccc
ttccccaaagacatagcaagcaaaccaaccaaggaacacgttatctacctgtaa
DBGET
integrated database retrieval system
