Oncorhynchus tshawytscha (Chinook salmon): 112261018
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Entry
112261018 CDS
T05605
Name
(RefSeq) VPS10 domain-containing receptor SorCS2 isoform X1
KO
K27082
VPS10 domain-containing receptor SorCS2
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112261018
Membrane trafficking [BR:
otw04131
]
Protein recycling
Others
Others
112261018
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sortilin-Vps10
Sortilin_C
PKD
PKD_4
BNR_6
DUF6786
InlK_D3
BiPBP_C
DUF2769
Motif
Other DBs
NCBI-GeneID:
112261018
NCBI-ProteinID:
XP_042184429
LinkDB
All DBs
Position
LG10:complement(30520995..30851633)
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AA seq
1178 aa
AA seq
DB search
MSAIGLMARSMVSLRPKGIVSAHLCLAVVIAWMSLMRPVLCDSGVLHRSDGDRLLDSRGA
VGIDGVDGVFGPGLGENDGDAGDVGSPRFRRALSQEKVSLLSSSFVLKGDATHNQAMVHW
TGENSSVILILTKYYHGDSSKVLESSLWRSSDYGTTYSKLNLMPGTTIVVSNFYICPINK
KKVILVSSSINERDQMLFISTDEGSSFQRQPLSFTAETLLFHPKEEDKVLAYCKEGKLYV
STDLGRKWTLMQERVTKDRIYWSVAGVDVDPDLVHMEMQDTSGGYLYVTCLIQNCSDKMV
TAQFLGKIDHNSLSVQDDYIFVKVTTGNRTKHYVSYRRNEFVQMRFPKYALPKDVHIVST
DESQVFLALQEWYQTDTYNLYQSDPQGVYYSVVLENVRSAKQPEESALIDILEVRGVKGV
FLANQKVDGKVTTLITYNKGRDWEPLAPPTTDMNGKPVTCQSPDCHLHLHLRWADNPYVS
GTVHTKDSAPGLIMGAGNLGSQLVEYKEEMYITSDCGKTWRQVFEEEHHILYLDHGGVIV
AIKDTSIPLKILKFSIDEGRTWIIHNFTSTSVFVDGLLSEPGDETLVMTVFGHISYRSDW
ELVKVDFRQSFPRQCTEADYDSWKLTDLKGEKCIMGQERSFRKRKDTAFCIKGKSYTSAL
TTKTCQCSEKDFNCDYGFERAQSLKTEGDRCFADFWHDPDSPPDDCHLGHDFESSTGYRK
VVSNMCEGGVNKQQSAKQHTCPLLPPRGLQLGIKGQILAVAPGDDITFIVHQEQGDTSNT
KYQVDLGDGVRAIYQNLTVTDEPIQHRYEQLGVYRVTVKAENMAGHDQATMYIQVTAPLQ
EVHLEVVPIAGVNQEVNLTAVVLPSEANLTVFYWWIGDNLQPKLSLENSLITRFPAEGEV
SVTVQASNGRSMVQDTKTVRIYDLFQVIPLAFSSNLDLLNPNIPEWREDVGQVVTRILAK
ITGVPQESLVTMVKPGLPTTAELYILPPESKPAKRSVFVDKRIPAIKQAFNENNVSFIVR
GGLQVLVTLADPNAGLVANDSSPRATEIGSQGGVAGPGVWALAVIFLISVIATGSFILYK
FKRISHPLKHCMTTDENITACMKIQKLPGRNVYAQMHNEKEQEMTSPVNHSEDTQHIIQG
EEFIDDDLDSQTLGNAGGNHSGVVLSINSRELHSYLTS
NT seq
3537 nt
NT seq
+upstream
nt +downstream
nt
atgagcgctataggcctaatggcgcgaagcatggtatctctgcgtccgaaaggaatcgtt
tcagcgcacctgtgcttggccgtggttatcgcctggatgtcattgatgagacccgtgcta
tgtgacagcggcgttttacaccggagcgacggggatcgtctgcttgacagccgcggcgct
gtaggcatagacggggttgacggagtgttcggaccgggcttgggtgaaaatgatggggac
gcgggcgacgtgggatccccgcgcttcaggagagcactatcccaagagaaagtgtccctg
ctcagcagctcgttcgtgctcaaaggggatgctactcacaaccaggcgatggtgcactgg
actggagagaacagcagcgtcatcctcatcctgaccaagtactaccacggtgactccagc
aaggttctggagagctccctctggaggtctagtgactatggcaccacctacagcaagcta
aacctgatgcctgggacaactatcgtggtctctaacttctatatctgccccatcaacaag
aaaaaggtgatcctagtgagctcgtccattaacgagcgtgaccagatgctgttcattagt
acagacgaaggctcctcgttccagcgacagcccctctccttcaccgcggagaccctcctc
ttccaccccaaggaggaggacaaggtgctggcttactgcaaggagggaaagctgtatgtg
tccacggatttgggccggaagtggactctaatgcaggaacgagtgaccaaggacaggata
tattggtctgtggctggtgtagatgtggaccctgacttggtgcatatggagatgcaggac
acaagtggagggtacctgtacgtgacctgtctgatccagaactgctcagacaagatggtg
acggctcagttcctggggaagatcgaccacaactctctctcagtccaagacgactacatc
tttgtcaaggtgaccacaggaaaccgcaccaagcactacgtttcataccgacggaatgag
tttgtccagatgaggttccctaaatacgccctaccaaaggacgtccacatagtgagtacg
gacgagagccaggtgttcctggccctgcaggagtggtaccagacagacacctacaacctg
taccagtcagacccgcagggcgtctactactccgtcgtgctggagaacgtccgcagcgcc
aagcagccggaggagagcgcccttatagacatactggaggtccgcggggtcaaaggcgtc
ttcttggccaatcagaaggtggatggcaaagtgacgactctcatcacctataacaaaggc
cgagactgggaaccccttgccccgcctaccactgacatgaacggcaagccagtcacctgc
caatcacctgactgtcacctccacctccacctgcgctgggctgacaacccttacgtatca
gggaccgtccacaccaaagactccgcccccggactcatcatgggtgcaggtaacctgggt
tcccagctggtggagtataaagaagagatgtacatcacctctgactgtgggaagacttgg
agacaggtgtttgaggaagagcatcacatcctgtacctggaccatggaggggtcattgtt
gccatcaaagacacctccatccccctcaaaatactcaagttcagtatcgatgagggaagg
acgtggatcatccacaacttcaccagcacctcggttttcgtcgatggacttctgagcgaa
ccgggagatgagaccctggtcatgacggtgtttggtcacatcagttaccggtcagactgg
gagcttgtcaaggtggacttcagacagtcattccccagacagtgtactgaggccgactac
gactcctggaaactcactgacctgaagggagagaagtgcatcatgggtcaggagaggagt
tttaggaagaggaaggacactgcattctgcatcaaggggaagagctacacctccgccctc
actaccaagacctgccagtgctccgagaaagacttcaactgtgactatgggtttgagcgt
gcccagagcctgaagaccgagggagatagatgctttgctgacttctggcatgacccagac
tcgccacctgacgactgccatctgggacatgacttcgagtccagcacggggtacaggaag
gttgtgtccaacatgtgtgaggggggagtgaacaagcagcagagcgccaagcagcacacc
tgtcctctgctgcctcccagaggcctccagctgggtataaaggggcagatactggctgtg
gcgcctggtgatgacatcaccttcatcgtccaccaggaacagggtgacaccagcaacact
aaataccaggtggacctgggtgacggggtgagggccatctaccagaacctgacagtgaca
gacgagcccatccagcaccgctacgaacagctgggggtctaccgtgtcactgtcaaggcc
gagaacatggccggacacgaccaggccaccatgtacatccaggtcacagcccctctacag
gaagttcacctggaagtagttcccattgccggggttaaccaggaagtcaacctgacagct
gtggtgcttccttcagaggccaacctgactgtcttctactggtggataggagacaaccta
cagcccaagctgtccctggagaatagtctgataacgcggttccctgcggaaggagaggtg
tctgtcactgtccaggcctctaatggacgctccatggtgcaggacaccaagacagtccgc
atctacgaccttttccaggtcatccctctggccttcagcagtaacctggacctcctcaac
cccaacattccagagtggagggaggacgtgggtcaagtggtcaccaggattctggccaag
atcacaggtgtccctcaggagtccctggtaaccatggtgaagccgggcctgcccaccaca
gccgagctgtacattctcccaccagagagcaagcctgctaagaggagtgtatttgtggat
aagcgtatccctgccattaagcaggccttcaatgagaacaacgttagcttcatcgtacga
ggaggtctacaggtgttggtgaccttagctgaccctaacgcaggactagtagctaatgac
tcgtccccgagagcgacggagatcggttctcagggtggagtggcaggtccaggtgtctgg
gctctggctgtcatcttcctcatcagcgtcatcgctactggatccttcatcctctacaag
ttcaagagaatcagtcatcctctgaagcattgcatgaccacagatgaaaacataactgca
tgtatgaagatacaaaagctgcctggccgaaatgtgtatgcccagatgcacaacgaaaag
gagcaggagatgaccagccctgtcaatcacagcgaggacacgcagcacatcatccagggg
gaggagtttatcgacgacgatctggactcgcagactctaggtaacgcaggaggtaaccac
tcgggtgtggtgctgagcatcaactccagagagctgcacagctacctgaccagctga
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