Oncorhynchus tshawytscha (Chinook salmon): 112261517
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Entry
112261517 CDS
T05605
Symbol
stxbp5b
Name
(RefSeq) LOW QUALITY PROTEIN: syntaxin-binding protein 5
KO
K08518
syntaxin-binding protein 5
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112261517 (stxbp5b)
Membrane trafficking [BR:
otw04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
112261517 (stxbp5b)
SNARE
VAMP, Ykt6, Sec22 (R)
Tomosyn
112261517 (stxbp5b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LLGL
WD40_CDC20-Fz
WDR55
Beta-prop_EML_2
WD40_WDHD1_1st
ANAPC4_WD40
Beta-prop_RIG_2nd
WD40_Prp19
WD40
Beta-prop_HPS5
Beta-prop_WDR90_POC16_2nd
Beta-prop_IFT140_1st
Beta-prop_TEP1_2nd
Beta-prop_WDR19_1st
Lgl_C
KNTC1_N
WD40_like
PEP5_VPS11_N
Synaptobrevin
CFAP43_N
RAB3GAP2_N
WDR54
Motif
Other DBs
NCBI-GeneID:
112261517
NCBI-ProteinID:
XP_024292677
LinkDB
All DBs
Position
LG11:16858549..16904336
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AA seq
1189 aa
AA seq
DB search
MKKFNIRKVLDGLAASSFSSTSPQPGTSQNDVIQETLQSEHFQLCKTVRHGFPYQPSSMA
FDPVQKILAVGTQSGAVRLFGRAGVECYCQHESGAAVIQLQFLVNEGALVSALADDSVHL
WNLRQKQPAILHTLKFNRERITFCHLPFQSKWLYIGTEKGNIHIVNVESFTLSGYVIMWN
KAIELSSKSHPGPVVHISDNPMDEGKILIGFECGTVVLWDLKCKKADYRYSYDEAIHSVA
WHHEGKQFTCSHSDGTLTTWNVRVPAKPTITITPHGKQPKDGKKPEPCKPILKVEYKTTR
AGDAFVVMSGGLSYDTGCRRACLTVMHGKSTSLLEMNYPIVDFLTLCETPYPNDFQDPYA
VVVLLEKDLVVIDLRQIGYPIFENPYSLSIHKSPVTCVEYFADCPPELIPALYSVGSWQK
RPGYSKKEWPISGGNWGQGTLSYPEIIVTGHADGSIKFWDASAIMLQVLYKLKTAKVFEK
ALKDGKEEKPSTEIVDEDPYAIQTLSWCPESRMLCVAGVSAHVIIYRFSKQEITTEVVQL
LEVRMQCELDDVDSPDTAGEHPLTPSTPVHSSCPTQEGEPPETQPSTTDDGPRDNVPCLK
VRSSPLKQSPGYQVELVIQLVWVSGEPPQQITSLAVNSSYGLVVFGNSNGLAVVDYLQKT
LVLNMGTSELYSPSDLYQRKPRSPRKKPQPSGALSDNNNGNNALEEKSNKSPTSVGSTSP
TNSDDEHKQERFIQKVKSKSRRFSKTVANDFAKMSRKICSPTEQKTDLEKRVRRQRSLPY
KKRFCCVKEGKEPRKSLSQQRTLSVPYLNAKDSLFSRSRSSSVTSIELESREAISSFHFS
ESFPRKTDSSGSPSLWVGTTQGTILVLSLSLPPTGDLRLQQPVRVSSCGTLVRLKGGIQT
MAFLDSLGAVLPPSYEPWSEPNPPDDEEEKEKARRRRLASPPTTQEGQDSQYAVVCSEKQ
AKVVGLPSQSCFFKHNITESSFVLRADVVQMAAGLCLACFCANGHIMALSLPSLRPLLDV
NYLPXTDMRIARTFCFSNLGQAMYLTSPTEIQRITYSQETCDNLQEMMGELFTPIETPEA
PNRGFFKGLFGGGAQSLDREDLFGETAAGKASRSLAQHIPGPQGMEGMKGAASGVVGDLA
RARIALDERGQKLGELEDRTAAMMASADSFSKHAHDMMLKYKDKKWYQL
NT seq
3570 nt
NT seq
+upstream
nt +downstream
nt
atgaagaagttcaatattagaaaagtgctggacggcttggctgcttcttcattttcctct
acatctccacaaccgggaactagtcaaaacgatgtgatccaagagacactacagtcggag
cattttcagctctgcaagactgtgcgccatggcttcccttaccaaccctcctccatggcc
tttgaccctgtgcagaagattctggctgtcgggactcagagcggagctgtgagacttttt
ggccgtgcgggtgtggagtgttactgtcaacatgagagtggtgcagctgtcattcagctc
cagttcctggtcaacgagggggcgctagtcagtgccttagctgatgacagcgttcatctg
tggaacctgaggcagaagcagccagctatcctgcacactctcaaattcaacagggagagg
atcacgttttgtcacctgcccttccagagtaaatggctgtacattggcacagagaaagga
aacatccacattgtcaacgttgagtccttcacactctcaggctacgttatcatgtggaac
aaagccatcgaactgtcctccaagtcacaccctgggcctgtggtccacatcagtgataac
cctatggacgagggaaagattttgattggatttgaatgtgggactgttgtgttgtgggac
ctgaaatgcaaaaaagctgactaccgctacagttatgatgaggctatccactcggtagcc
tggcaccacgagggcaaacagttcacctgcagccactcagatggaactctgactacatgg
aacgtacgcgtccctgccaagcctacaatcaccatcacaccacacggtaagcagcccaag
gatggaaagaagccagaaccatgtaaacctatccttaaagtggagtacaaaacgacaaga
gctggggacgcctttgtggtcatgtctggaggcctgtcctatgacacagggtgcaggaga
gcctgtctgacggtgatgcatgggaagagtacttccctcctggagatgaactatcccatc
gtagacttcctcacgctctgcgaaacaccatatccaaatgatttccaggatccttatgcc
gtagttgtccttttggaaaaggatttagttgtcatcgaccttagacaaattggataccca
atatttgagaacccgtactctttgtcgatccacaagtctccagtgacgtgtgtagaatat
tttgctgactgccctcctgaactcatacctgcactttactctgttggctcctggcaaaag
agaccgggttatagtaagaaggaatggcccataagtggtggtaactggggccaaggcaca
ctaagctaccctgagatcatcgtcactggacatgctgatggctcaatcaagttttgggat
gcttctgcaataatgctccaagtactgtacaagctgaagactgccaaggtgtttgagaag
gctctaaaggatggtaaggaggagaagccgagcacggagatagtggatgaggatccctac
gccatccagaccttgtcgtggtgcccagagagcaggatgctgtgtgtggctggagtctct
gcccacgtcatcatctataggttcagcaaacaggaaataaccactgaggtggtgcagctg
ttggaggtgcgtatgcagtgtgagctggatgatgtggattctccagacaccgcaggagag
catcctctcaccccatctaccccagtgcactcctcctgcccaacccaggagggagaaccc
cctgagacccagccctccacaactgatgatgggccccgggataatgtaccatgcctcaag
gtccggagctcccctctgaagcagtctcctggttaccaggtggagctggtcattcagctg
gtctgggttagtggggagccgcctcagcagatcaccagcctggctgtcaactcctcatac
ggacttgtggtgttcggcaacagcaatggtctggctgtagtggactaccttcagaagacc
ctcgtcctgaacatgggcacgtcagagctgtacagtccctcagacctctaccagagaaag
cctcggtcgcctcgcaagaaaccacagccgtctggagctctcagtgataacaacaatgga
aacaacgctttagaagagaaaagcaacaaatcaccaacgtcagtaggctctacgtcaccc
accaattcagacgatgaacacaaacaggaaaggttcatacagaaggtgaagtccaaaagc
agacggttttccaagacggttgccaatgactttgccaagatgtcaaggaaaatttgctcg
cctacagagcaaaagacagacctggagaagagggtgcgacgccagcgctctctcccgtat
aagaagcgcttttgttgtgtgaaggagggcaaggagcccaggaagtctctctcccaacaa
aggactctctcagtcccttacctcaatgccaaggacagtttgttcagccgctcgaggagc
tccagtgtgaccagtatagagctggagtcccgcgaggccatctcctccttccacttcagt
gagagtttccccaggaagacagacagcagtggcagtcccagcctgtgggtgggcactacc
cagggcactattctggttctgtccctaagcctgccacccacaggggacctgaggcttcag
caacctgtcagagtatcatcttgtggtactctggtcagacttaaaggaggtatccagacc
atggctttccttgactcccttggggcggtcctccccccttcctacgagccgtggtcggag
cccaaccctccggacgacgaggaggagaaggagaaggcgaggcggcgcaggctggcctct
ccacccaccacccaggagggtcaggacagccagtatgctgtggtgtgttcagagaaacag
gccaaagtggtgggcctaccctcccagtcctgcttcttcaaacacaacatcacagagagc
tcctttgtgctgagagctgatgtggtgcagatggctgctggactctgcctcgcctgcttc
tgtgctaatggacacatcatggctctgagtctacccagtctcagaccactcctggatgtg
aactaccttcccntgacagacatgaggatagcccggaccttctgcttctccaacctgggc
caggccatgtacctcacctcccccaccgagatacagagaatcacatatagccaggagacc
tgcgacaatctacaggaaatgatgggagagttgtttacaccgatagagacaccggaggct
cctaacagaggtttcttcaagggcctgtttgggggaggggctcagtccctggatagagaa
gacctgtttggtgagacggcggcgggaaaggcgtctcgtagcctggcgcagcacattcct
gggccccagggcatggaaggcatgaagggggcagcctcgggagtggtgggggacctggcc
cgtgcccggatagccctggacgagagggggcagaaactgggcgagctggaggacagaacc
gcagccatgatggccagcgctgactccttctctaaacacgctcatgatatgatgctgaag
tacaaagataagaagtggtatcagctttga
DBGET
integrated database retrieval system
