Oncorhynchus tshawytscha (Chinook salmon): 112261923
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Entry
112261923 CDS
T05605
Name
(RefSeq) serine/arginine repetitive matrix protein 1 isoform X1
KO
K13171
serine/arginine repetitive matrix protein 1
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03013
Nucleocytoplasmic transport
otw03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
112261923
03015 mRNA surveillance pathway
112261923
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
otw03019
]
112261923
03041 Spliceosome [BR:
otw03041
]
112261923
Messenger RNA biogenesis [BR:
otw03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
112261923
Spliceosome [BR:
otw03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR-related proteins
112261923
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PWI
Motif
Other DBs
NCBI-GeneID:
112261923
NCBI-ProteinID:
XP_024293338
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All DBs
Position
LG11:complement(36721098..36734771)
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AA seq
869 aa
AA seq
DB search
MDAGFFRGTSAEQDNRFSNKQKKLLKQLKFAECLEKKVDMTKVNLEVIKPWITQRVTEIL
GFEDDVVIEFIFNQLEEKHPDSKMMQINLTGFLNGKNAREFMRDLWPLLLSAQDNIAGIP
SAFLEQKKEEIKQRQIEQEKLASLKKIDEKENRERESPRRRKSRSQSPRRRSPVKRERKR
SHSRSPRRKPSPSSSPPPTAPAVTLVSVTLPQSTEEPQPEPDTSESAVPEPVIQEASSTS
DLVKPHTVVVVPDSVMKVKEPSPGKASKKEERPKPREKDGRRDRPRHRSRSHSRRRPKSR
SRSYSPRRRPSPRRRMSPRRRSPPRRGPPVPRHRRSRSPVRRRRSRSPSSGSSSSAPRSP
QKAVKRTSTTPPRKQPRGHAADPSLSPSRRRAPNGSPPGKARRSASPRARKGRSSASPSR
SAGSKKKPGSRNDSLSPVPKPRHSEASESEGATADPVQQRRQYRRQNRETSSDTGSSSSS
EDEGSKRPGGGPAARNGNVRRRRSRSPSSPRRRHRDCSPRKRRSLSPGGRRSPPRRRRSP
SPPPRRRSPSPPPRRRSPSPRRYSPPIQRRYSPTPLGPQKRRLSGSPPPKCLSPMPKRRP
SRSPKRRSPPPQKRRTPPLPTSPPRHRRSPMLPSNRPGRGTRSPPAVHSNRLSPSPANRG
RAMRGSASPQARFDSSGTSPPGQRRQVSPSHSNRAIRRVSRTPEPRKNQRASQSPQPMRR
ASSRSPSGSPKPGALKRPAPASGFPSSGCSASGSPSAKKASSGSGSPSPNKNSDTEAGGK
KNKKHKKEKKHKKDKKHKKHKKHKKEKSGVLVAAGDGQENLGMEEDVDSDLKKESDSEVE
ERLDDLEKHLREKALRSMRKAGKLSPPLS
NT seq
2610 nt
NT seq
+upstream
nt +downstream
nt
atggacgcgggattcttccgcggcacaagtgcagaacaggacaatcgcttcagcaacaag
cagaagaaacttctaaagcaactgaaatttgcagaatgtctggaaaagaaggtggatatg
accaaggtgaacctggaagtcatcaaaccttggatcactcagcgagtgacggagatcctg
gggttcgaggatgatgtcgtcatagaatttatatttaaccagctagaagaaaagcacccg
gacagtaagatgatgcagatcaacctgacgggcttcctgaatgggaagaatgccagagag
tttatgagggacctgtggcctctgctgctcagtgcccaggacaacattgctggtatcccc
tctgccttcctggaacagaagaaagaggagatcaaacagagacagattgagcaggagaag
cttgcctctctgaagaagattgatgagaaggaaaacagagaaagggagagccccagaagg
aggaagtcaaggtcacagtctccacggcgacggtctccagtgaagagagagagaaagcgg
agtcactcccgctccccgaggcgtaagcccagtcccagcagctcccctccaccaacagcc
ccagccgtcaccctggtcagtgttacattgccccagagcactgaggagccccagccagag
ccagacacctctgagagcgccgtacctgagccagtcattcaggaggcctcttccaccagt
gatttggtgaagccgcacactgtggttgtggtacctgactctgtgatgaaggtcaaagaa
ccctccccaggtaaggcttctaaaaaggaggagaggcccaagcccagggagaaggacggc
aggagggacaggccccgccaccgctctcgctcccattcccgcagacgacctaaatcgcgg
tccagatcttactccccacgccggaggccgagccccaggagacggatgtcccctcgtcgt
aggagcccccccagacgtggccccccagtccccagacacaggcgcagtcgctcccctgtc
cgcaggcggcgctctcgctccccatcctctgggagcagctcctccgcgcctcgctcacct
cagaaggccgtgaagagaacgtcaaccacacctcctaggaaacagccccgcggccacgca
gctgatccctccctcagcccctccaggagaagagcccccaatggtagcccccctgggaag
gcccgacgctctgcctcccctcgggctagaaagggccggtcctcagcctccccgtccaga
tcagctggttcaaagaagaaaccaggatcaaggaatgattcactgtctcctgttccaaaa
cccaggcattctgaggcatcggaatcagagggggctaccgcagatcctgtgcagcagcga
cgtcagtatcgcaggcagaatcgggagacgtcttcagatactggatcatcctcctcatca
gaggacgaggggtccaagaggccgggcggagggccagcggcgaggaacgggaatgtcagg
aggaggcgcagtcgctccccctcctcccccaggagacgacacagggactgctcccccaga
aaaagacgctccctctctcctggaggccgccgatctcccccacgccgtcgcagatctccc
tctcctcctccgagacgcaggtctccctctccacctcctcgcagacgctccccctccccc
aggcggtactctccccccatccagcggcgctacagccctactcccctgggcccacagaag
agaaggctatcggggtctccccctcccaaatgcctttccccaatgcccaagcgccgtccc
tccaggtccccgaagcgcaggagtccccctccccaaaagagacgcacacctcccctccct
acctctcccccccgacacaggaggagccccatgcttccatccaaccggccaggccggggc
acgcgctccccccctgctgttcacagtaaccgcctctccccctcccctgccaaccgtggt
cgggccatgcgtgggtctgctagtcctcaggcgcgctttgactcctcgggcacctctcca
cctggccagaggcgccaggtgtccccctcacacagcaacagggcaatccgcagggtgtcc
cggacaccagagccccgcaagaaccagagagcctctcagagcccccagcctatgaggaga
gcgtcatcaaggtcaccgtctggttctcctaaaccaggagccttgaagcggccggcccca
gcctcaggcttcccctcatcgggctgctcggccagtggctcgccatcagccaagaaggcc
agcagcggctctggcagcccttctccaaacaagaattcagacactgaggctggaggaaag
aagaacaaaaaacataagaaggagaagaaacataagaaggacaagaagcacaagaaacac
aagaaacacaagaaggagaagagtggagtgttggtggctgctggggatggccaggagaac
ctggggatggaagaggatgtagactccgaccttaaaaaggaatcagacagtgaagtagaa
gagcgtctggacgacctggagaagcacctgcgagagaaggcgctgcgttccatgaggaaa
gctggaaagctgtccccgccactgtcttga
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