Oncorhynchus tshawytscha (Chinook salmon): 112261930
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Entry
112261930 CDS
T05605
Name
(RefSeq) probable histone deacetylase 1-B
KO
K06067
histone deacetylase 1/2 [EC:
3.5.1.98
]
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03082
ATP-dependent chromatin remodeling
otw03083
Polycomb repressive complex
otw04110
Cell cycle
otw04330
Notch signaling pathway
otw04350
TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
112261930
03083 Polycomb repressive complex
112261930
09130 Environmental Information Processing
09132 Signal transduction
04330 Notch signaling pathway
112261930
04350 TGF-beta signaling pathway
112261930
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
112261930
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
otw03036
]
112261930
Enzymes [BR:
otw01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
112261930
Chromosome and associated proteins [BR:
otw03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class I HDACs
112261930
HDAC complexes
Sin3A-HDAC complex
112261930
BRAF-HDAC complex
112261930
REST complex
112261930
SHIP complex
112261930
MiDAC complex
112261930
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.6)
112261930
Heterochromatin formation proteins
Other heterochromatin formation proteins
112261930
Chromatin remodeling factors
NuRD complex
112261930
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
Motif
Other DBs
NCBI-GeneID:
112261930
NCBI-ProteinID:
XP_024293350
LinkDB
All DBs
Position
LG11:36793925..36802875
Genome browser
AA seq
498 aa
AA seq
DB search
MALSSQGTKKKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKA
SGEEMTKYHSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVA
GAVKLNKQQTDIAINWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHH
GDGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNYPLRDGIDDESYEA
IFKPIMTKVMEMYQPSAVVLQCGADSLSGDRLGCFNLTIKGHAKCVEYMKSFNLPLLMLG
GGGYTIRNVARCWTYETAVALDSSIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTNDYL
EKIKQRLFENLRMLPHAPGVQMQAIPEDAVQEDSGDEEEEDPNKRISIRAHDKRIACDEE
FSDSEDEAEGQGGGRRNAASFKKAKRTKTEEDKEKEGEEKKAGDDKKADDKKEVKEEKVP
EEEKMDTTKGPKEESKTP
NT seq
1497 nt
NT seq
+upstream
nt +downstream
nt
atggcgctgagttctcaaggaacaaagaaaaaagtgtgctactattacgatggtgatgtt
gggaattactactatggccaggggcatcccatgaagccacaccgtatccgcatgacacac
aacctcttgctgaactatggtctctacagaaagatggagatataccgacctcacaaagcc
agtggagaggagatgaccaagtaccacagtgacgactacatcaagttcctgcgttccatc
cggcctgacaacatgtcggagtacagcaaacagatgcagagatttaacgttggtgaggat
tgccctgtgtttgatggcctgtttgagttctgccagctctcaacaggaggctctgttgct
ggagctgtgaagctgaacaaacagcagacagacattgctattaactgggctggaggtctc
catcacgccaagaagtctgaggcgtcaggtttctgctatgtgaatgacattgtgctcgcc
attttagagttactgaaataccaccagagagttctgtacatagacattgacattcaccat
ggagatggagtggaggaagcgttctacaccacagaccgggtcatgaccgtgtccttccac
aagtacggagagtacttccccggcactggagacctgagggatattggcgcagggaaaggc
aagtactatgctgtgaattaccctctgagagatgggatagatgacgagtcttacgaagcc
atattcaagcctatcatgactaaagtgatggagatgtaccagcctagtgcagtggttctt
cagtgtggagctgactctctctcgggagacaggcttggctgctttaacctcaccatcaaa
ggccatgctaagtgtgtggagtatatgaagagcttcaacctgcccctgctgatgctgggt
ggtggaggctataccatccggaacgtggcccgctgctggacctatgagacagccgtggcc
ctagacagctccataccaaacgagcttccatacaatgattactttgagtactttgggcca
gacttcaaactgcacatcagtccctccaacatgaccaaccagaacaccaacgactacctg
gagaagatcaagcagcgtctgtttgagaaccttcgaatgctgccccacgccccgggggtc
cagatgcaggccatcccagaagacgccgtgcaggaggacagtggagacgaggaggaggaa
gaccctaacaaacggatatccattcgcgcccatgacaagaggatagcgtgtgacgaggag
ttctcagactctgaggacgaggctgagggtcaagggggcggacggagaaatgctgccagc
ttcaagaaagccaagagaacaaagactgaagaagacaaagaaaaagagggagaagagaag
aaagcaggcgatgacaagaaagctgatgacaagaaagaagtaaaagaagaaaaggtgcca
gaggaggagaaaatggacacaacaaaggggccaaaagaggagtccaagacaccgtga
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