Oncorhynchus tshawytscha (Chinook salmon): 112261963
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Entry
112261963 CDS
T05605
Name
(RefSeq) SR-related and CTD-associated factor 8 isoform X1
KO
K13191
RNA-binding protein 16
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
otw03021
]
112261963
03041 Spliceosome [BR:
otw03041
]
112261963
Transcription machinery [BR:
otw03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
112261963
Spliceosome [BR:
otw03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
112261963
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
RRM_1
CDC45
Transformer
DUF3525
Motif
Other DBs
NCBI-GeneID:
112261963
NCBI-ProteinID:
XP_024293388
LinkDB
All DBs
Position
LG11:37892978..37934630
Genome browser
AA seq
1485 aa
AA seq
DB search
MEAVKAFNDELYSLNEYKPPISKAKMTNITKSAIKAIKYYKHVVQSVEKFVQKCKQEYKV
PGLYVMDSIVRQSRHQFGQDKDVFAPRFSKNIIGTFQHLYRCPSDDKSKIVRVLNLWQKN
AVFKSDIIQPLLDMAAGLPPPSVTPVMTSRDALVNNATPGTPATPATPANIVSSLPDWAS
QFSNTDTVAAVAQILQSPQGQQLQQLVQSLQMQQQKPQPSLLQALDAGLVVQLQALTAQL
TAAASANPMHLNPLDQRVSSFNKKMLGHFDFGNDSERSEESKKDSQSSQMPMVSDSIFHQ
LAEQLQQQNLEQLQKQLMEHQQHQQKDGIFGSENTPQQSSSQSQHPEPDNKIDDSIENQQ
QDMDMDLDDGPEMDEEIFEPDDKKSKTIDIQSRTRSRSRSRSPRKRRSRSRSGSRKRKHR
KRSRSRSRERKRKLSRSYSSERHARELEKERQKKGLPPIRSKFLSVCSTTLWVGQVDKKA
TPQDLTNLFEEFGQIESINMIPPRGCAYICMVHRQDAYQARQKLSTGSHKIVSKVIKIAW
ALNKGVKQEYKQLWDMDLGVTYIPWEKVKLDDLDGFAEGGMIDQETVNAEWEAAKNAPEP
VKEAVSQAVSAEPMAATNSQQTQQKAFIQQVSMMPVQLPVAQAVPARGLVPPSFPVSMTM
PPPGYGPPPTFLRAGFNASQPPPGFMQAAGVPQQAGMGSAPISLVQPSMSQAQDSMKDSP
YGATVPGSFMPSAIPGQGVFNPLQPGVQAQQGANDKTGQSADGMDAAAELVLQGMQNAMS
RRMGLLGMHPSASLTHPLQQQGLPGQRMPGLMPLDLRPSMLQGAGARFPLLMQQGLSQQS
ILDASLHAQARARAASQMDHFNRAEGAFNRGPNPPNENMSKAEDQPSSRADESQQGRDQD
YRFPPPQEKQSTGLLRTPPPEHRESMGGGGRGGGAGGGGAGGGGMGGGGGRPALLQTPVR
EPARDSVVGRLQALAGFTPQTQSRWGPPRGDFDERDMRGSPAGVSKGFQEERPGSNQGQN
FPNRFENQNRAGAGGVGAGGPGGGGVGGGPAWSRGGAAAPFPDADMPQDLDERRRAWDRQ
QRERDDREFDLRKEMNGNRRERDSREKDRERERERDRERERDHGRERGNREREQECDRER
EREKEREKDRERERERDRNKRGAWTPLLPLPQPLLPTPALTPTLSLTQGKSQALLQLQSR
LQPKPGFLTKPGLLQTPILLTRSTSQAPTKFLQAPSQSPTQAKNEALPRPEPQTESQSST
QTHASPKSESSPQTQSSPQNQSSPQNLVSPQAQLPSPPQALPWAQLPPQALSPPRAQTPP
QALSPPPAQSPPQALSPPPAQSPPQALSPPLAQLPPQAPSPHQEITDTQEEPEKLQEEPM
EEPEPIEEPPSQLVYGTGLRMDTDVVAEPTPERAPTPTLSPTPVPLSMSPVLTHRSEEPQ
CLPEPLDVQQPPQHASSSPKDNGLSEPMEEAEKKPVVEQTDTEGT
NT seq
4458 nt
NT seq
+upstream
nt +downstream
nt
atggaggcagtcaaagcattcaacgacgagctctactctctgaatgagtacaagcctccg
atctccaaggccaagatgaccaatattaccaagtctgcaataaaagctataaaatactac
aaacatgttgtccagagcgtggagaagtttgttcagaaatgcaagcaagagtacaaggtc
ccaggcctgtacgtcatggactccatcgtgcggcagtcacgacaccagtttggccaggac
aaggatgtgttcgccccgcgcttcagcaaaaacataatcggaaccttccagcacctctac
cgctgcccctcagatgacaagagtaagattgtcagagtcctcaacctgtggcagaagaac
gccgtcttcaagagtgacatcatccagccgctgctggacatggctgcaggactaccccct
cccagtgtcacccctgtcatgaccagcagggatgctctggtcaacaacgctacgcctggt
accccagcgaccccggccactccagccaacatcgtgtccagtctgcctgactgggcgtct
cagttttccaacacagacactgtagctgctgtggcccagatcctgcagagtccacaggga
caacagctccagcagctggtgcagagtctgcagatgcagcagcagaagccccagccgtct
ctgctgcaggcgctggatgcaggcctggtggtccagctgcaggccctgacggcccagctc
actgctgccgcctcagccaaccccatgcacctcaaccccctggaccagagggtttcctcc
ttcaacaagaaaatgttgggtcattttgactttgggaatgattcagaacgctctgaagaa
tccaaaaaggactcgcaatcatcccagatgcccatggtgtctgactccatcttccaccag
ctggcagagcagctgcagcagcagaacctagagcagttacagaagcagctcatggagcac
cagcagcaccagcagaaggatggaatctttgggtctgagaacacaccccagcagagcagc
agccaatcacagcacccggagccagacaacaagattgatgactccattgaaaaccagcag
caggacatggacatggacctggatgacgggccagagatggacgaagagatcttcgagcca
gacgacaagaagtccaagacgattgacatacagtcaagaacacggtccaggtcacgatcg
agatctcccaggaagagacggtccagatcacggtcaggctctcggaaacggaaacatcgc
aagcgatcacggtcacgctccagagaacggaagaggaagttgtcgcggtcctactccagc
gagagacatgcccgcgagctagagaaagagcgtcagaagaaaggactgcctccaatccga
tccaagtttctcagtgtgtgcagcaccactctgtgggtgggacaggtagacaagaaggcc
actccgcaggacctcaccaatttgtttgaagagtttggtcagattgagtctatcaatatg
atccctccccgtggctgtgcctacatctgtatggtccacagacaggatgcctaccaagcc
agacagaaactcagcactggttcacacaagatcgtctccaaggtcattaagatcgcttgg
gcgctgaataagggagtgaagcaggagtataagcagttgtgggacatggacctgggggtc
acctacatcccctgggagaaggtcaagctggacgacctggacggcttcgctgagggaggc
atgatcgaccaggagactgtcaacgccgagtgggaagcagccaaaaatgcaccagagcca
gtgaaggaagcggtgagccaggctgttagcgctgaacccatggcagccactaattcccaa
cagacccaacaaaaggccttcatccaacaagtctccatgatgcctgtgcagctccctgtg
gcccaggctgtccctgctaggggtcttgtgcctccatccttccctgtttccatgacaatg
cccccgccaggctatggccccccgcccaccttcctcagagcagggttcaacgcctcccag
cctcctccaggtttcatgcaggcagcaggtgttcctcagcaagcaggcatgggctcagct
cctatatctctggtgcagccctccatgtcgcaggctcaggacagcatgaaggactccccg
tacggagccactgtcccaggaagcttcatgccctctgccatccctggacaaggggtcttc
aacccgcttcaacctggagtccaggcgcagcaaggagccaatgacaagacgggccaatct
gctgatggcatggacgctgctgcagagttagtactgcaaggtatgcaaaatgcaatgagt
cgtcgtatgggtcttctggggatgcacccctcagcctccctcacccaccccctacaacag
cagggcctgcctggccagaggatgcctgggctaatgccgctggacctccggcctagtatg
ctccagggagccggggcccgcttccccctcctgatgcagcagggcctgtcccaacagagt
atcctggatgcctccctccatgcacaggcccgcgccagagcggcctcccagatggaccac
ttcaacagggccgaaggggccttcaaccggggtcccaaccccccaaatgaaaacatgtct
aaggctgaagaccaaccttcctctcgggcagacgagagccagcaggggagggaccaagac
taccgcttccccccgccccaggagaagcagagcacaggcctgctgaggacacctcccccg
gagcacagagagtccatgggtggaggtggacgtggtgggggagctggtggtgggggtgct
ggtggtgggggtatgggcggaggaggaggcagacctgccctgctgcagaccccagtgagg
gagccagctagagacagcgtggtagggcggcttcaggccctcgccggcttcaccccccag
acccagagtcgctgggggccacctagaggggactttgatgagcgtgacatgcggggctca
ccagccggggtctccaagggcttccaggaggagcgccctggctccaaccaggggcagaac
tttcccaaccgctttgagaaccagaaccgcgctggggcaggaggagtaggtgctggtggt
cctggtggcgggggtgttggagggggcccggcgtggagtcgtggtggagctgcagcaccg
ttccctgatgctgacatgccacaggacttggatgagcgccggcgcgcttgggacaggcag
caacgggagagggacgacagggaatttgacttaaggaaggagatgaacggcaaccgccgt
gagagagatagccgcgagaaagaccgggagagggagagagagagggaccgggagagagaa
agggaccatgggcgagagcgtggcaaccgtgaacgagagcaggagtgcgaccgggagaga
gagcgtgaaaaggagagggagaaggatcgggagagagaacgtgagcgggaccgtaacaag
cgtggagcctggacacctcttctccctctaccacaacccctacttcctactcctgccctg
accccaaccctctccctgacccaaggcaaatctcaggccctgctgcaactacagtccagg
cttcaacctaaacctggattcctaactaaaccgggtctgcttcaaactccaatcctccta
actcggtcaacatctcaagccccaaccaagttccttcaagccccatcccagtctccaact
caagccaagaatgaagccctccccaggcctgagccccagacagagtcccagtcctctacc
cagacccatgcttcccctaagtctgagtcctcaccccagacccaatcctctcctcagaac
cagtcatcaccccaaaacctggtttcccctcaggcccaattgccatcccctccccaggcc
ttgccatgggcacagctcccaccacaggccctgtccccaccacgggctcaaacgccacca
caggccctgtccccaccaccggcacagtcgcctccccaggccctgtccccaccacctgca
cagtcgcccccccaggccctgtccccaccactggcacagttgccaccccaggccccgtcg
ccacaccaggagatcactgacacccaggaagagccagagaaactccaggaagaacccatg
gaagagcctgaacccatagaggaacctccatctcagttggtctatgggacggggttgagg
atggacactgacgtagtggctgagcccacacctgaacgggctcccacccctaccctctcc
cccactccagtcccactctcaatgtcacctgtcctcacacaccgctctgaggaaccccaa
tgcctgccggaacccctggacgtgcagcaaccaccacagcatgcctcctcctcccctaag
gacaatggactgagtgagccgatggaggaagctgagaaaaagccagtggtagagcaaact
gacactgaggggacataa
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integrated database retrieval system
