Oncorhynchus tshawytscha (Chinook salmon): 112262193
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Entry
112262193 CDS
T05605
Name
(RefSeq) LOW QUALITY PROTEIN: AT-rich interactive domain-containing protein 1B
KO
K11653
AT-rich interactive domain-containing protein 1
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
112262193
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
otw03000
]
112262193
03021 Transcription machinery [BR:
otw03021
]
112262193
03036 Chromosome and associated proteins [BR:
otw03036
]
112262193
Transcription factors [BR:
otw03000
]
Eukaryotic type
Helix-turn-helix
ARID
112262193
Transcription machinery [BR:
otw03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
112262193
Chromosome and associated proteins [BR:
otw03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
112262193
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BAF250_C
ARID
Motif
Other DBs
NCBI-GeneID:
112262193
NCBI-ProteinID:
XP_042186023
LinkDB
All DBs
Position
LG11:38174323..38512926
Genome browser
AA seq
2368 aa
AA seq
DB search
MAAQVASAPTLTNNKNNTLSGNLGQEIHSGKSGGGNISRSGEMLGAVDGTNTMNNVDHHH
RNELNMVNSTYSLNNNSDTPEKDSGNNVTSSDSTTSPGGMETGLIENHKMKNVGSGDPPQ
HLTPPQQQSQFNPFPQHQQRQIQSNNNNNSQATRGERENHHHGEKEGVLGSQSEQQMLNK
GDGDHTCKPGERMGARYEHSNLGPTTNNIISQPQSAGGNSELNNYYGTSRVGPCYDQHGG
QQSTGMGMMHSSGPNNMDPVHNSQEGYHNSHYNHYPGYRQGYCGAGYGMMAPSRQGSNML
IGPGSNTPAGHVKAAMGAAACGSGGSVGGFQRFPGQSQHPTGATPTLNQLLTSPSPMMRG
YGSGYQDYNSPSAQQQDGIGLGKDMTSQYGSTTHGWPGQQRNHPSMSPGNGGPGISRPQV
ASKDFMAMKRSQLYGMGNNPYSQQQQGGPYPNQPYGSPTPHRYPMGMQGRGQVGIGGMQY
PQQQQGPPQYGQQGIGGYSQQQQQAGNDPGPYFSPPQQNPTPPSQXPYLPPHAPPQQEAP
RESYGGRSQQQAPGNSGKANQEDMGLISQDRPSSLPDLSGSIDDLPTGTEAGHSSAISAT
GSTSSQGEQSNPAQSPFSPHASPHLSSQGSGPSSSPVGSPVGSNQSRSGSGPISPVSGPT
TAPGSQMAPQTPGNMLDVPQPPLTQSPMPQERGFMSNMQRNQSGSQFAPPPQSGPSMSPH
PSPGPGGQMYPGMGPYPHGGSSGPYGPQGSQANQYGPQGNYPRPPNYGGTPSANYSSPGP
GSGMTNSQGMNASSPMHGQGPGQPMGRSPGVGSRPYPNMAPSSPSMPQPAGPGMGPPSLG
NVNRKAQEAAAAVMQAAANSVQGRQGSYPGPGMNLMGTAGSGAPYNQSPGNNSGMGTPQG
PPYNMPPSGAVGMAVSGMMNPDGKQKTGGKEENMPTNEPPKLKDGHSGSQCVSQPTTPGA
MLVPSPLSPSPASLSSYHGDDSDSISSPVWPKTPSSPKLNSSTMTNERITRLYDMGGEPE
RRGWVDRYLSFMEERGTPVPHLPAVGKKPLDLCRLYMAVREIGGLALVNKNKKWRELSTN
LSVGTSSSSASCLKKQYIQYLFAYECKVERGEDQPADSNTGTGGENRKQAKVQPPSPANS
GSVQGPQTPQSSGSSSMAEMSGDLKPPTPATTPQGQVTPIPASRSSDVSVQDPFSEVSDP
AFQKRNSLPLVGSGGVYQQGVNMPPNMMMRMQYEKDPFVGMRKVAGGEPYMPGQMTSGGI
QDMYGRSTSGMGQRSPYPYGPGYDRRPDHLMGMEGSMGPPGNQSNMGPSNSEGSIYSPNR
YPSQQRHEGYAQQYPGMSYGMHPSGMYPQQQRPMESMYGSPGKRHEGEMYGPPAKRHEGE
MYGPPAKRHEGEMYGPPAKRHEGEMYGPPTKRHEGEMYGPPAKRHEGEMYAMQYRGQQPD
MYNHYTTGYSGPERRPMQGQFPYPPPYSRERMQASGQGQHPMGPQMMSGGPPSNNGVEGP
QGPNMWPSRTDMGYPYPNRQGAPSQVPPYGPMGRGDDLEGRPIQDGQWLGHGGHRQSSYM
SGGMTPMSSRQPPSAYQTSPSMANHLPRAPSPGSFQRSMEARMSPNKAVFMGSMKMPGKP
GMPMPVQSNGHPGQVAPNLLRDLNYPLGSVEATMPVFKPRRKITSKDTGTPEAWRVMMSL
KSGLLGESTWALDTINILLYDDRSVASFTLTQLPGFLELIVEYFRRCVMEIFGILEEYEI
GTIGQNTLLGAEACDQGEELTSEPEMDCEPSPPEPEQEQEVERGETEKGEVEKGEEKPVD
ITEKMTEEGMSPPSAMEPAPEGTKEESEAEMKVKKEEGEKEEEREKEEEREKEEEGEKEK
DGEKEKGKENEESEKPTESKEASAESKEDSPYQAPSEHEPRPQQASKYDKFHVKILHKED
LIEDMTEQLGHVTEFTSGLLHWQAGGGDSTAHIQAYFERRGEHSDRMDGEREECASLNKE
QDTEGGKQTEMGITATIDDILCARLGALSEGHPTHSAPTYPFRLHQGGGHQHITLLEDEP
RCLDEAPLSTSSPWQDSLAKRCLCVSNIIRSLSFIPGNDSDMSRHPGLVLILGRLLLLHH
QHPERKRTPPSYQREDVQERGLACSKDEWWWNCLATLRENTLVTLANISGQLDLSLYPET
ICLPILNGLLHWMVCPSAEAQDPFPSGTPHSPLTPQRLVLECLCKLSIQDNNVDLLLATP
PFSRQEKLYATLVRYVGQRKNQVYREMAVATLSNLAQGDSTAARAIAIQKNSVGNLMGFL
EDGVSMAQYQQNPHSMLHMAHHPPMEPPSINMMCRAAKALLAMAKVEENRPEFVLYEGRL
LDISISSVLNQGVTSIICEVLFQFVKKL
NT seq
7107 nt
NT seq
+upstream
nt +downstream
nt
atggctgcgcaagtggcatcagcaccgacattaactaataataagaataacacattgtct
ggcaatttgggtcaagagatacattcggggaaatcaggaggaggaaatatatcgagatct
ggagaaatgcttggagctgttgatgggactaacacaatgaataatgttgatcaccaccac
cgaaatgagctcaacatggtcaattcaacttattctctgaataacaattctgacacaccg
gagaaggatagtggaaataacgtcacttcgtcagattcgacgacctctccgggggggatg
gaaaccgggttgatagagaaccataaaatgaaaaatgttgggagcggagatccccctcag
cacctcacaccgccgcaacagcagtcacaatttaacccgtttcctcagcatcagcagcgc
cagatacaaagtaacaacaacaacaacagccaagccacaaggggagagagagagaatcac
catcacggagagaaggagggtgttttggggagccagtcagagcagcagatgctaaataaa
ggtgatggggatcatacctgtaaaccaggggagcggatgggtgctaggtatgaacattcc
aacttgggaccaacgaccaacaacatcatcagccagccccagagcgcgggaggaaacagc
gagttgaataactactatggcacttccagagtagggccctgctatgatcaacatggcgga
caacaaagcacagggatggggatgatgcactcttcgggacccaacaacatggatccagtg
cacaactcccaagaagggtaccacaacagccactacaaccactatcctggctaccggcag
ggctactgtggcgcgggctatggcatgatggccccgtccagacagggcagtaacatgctg
attggccctggcagcaacactccagctggccatgtcaaggctgctatgggagctgctgcc
tgcggttctggtggaagtgttgggggctttcagagattcccaggacagagtcagcatcct
accggggccaccccgacactaaaccaattactgacatctccaagtccaatgatgcgaggt
tatggaagtggctatcaagactataacagtccctctgcacaacaacaagatggcatcggc
ctgggcaaagacatgacttctcagtatggctccacaacccatggctggccagggcaacag
agaaatcacccgtccatgagtcctggaaacggagggccaggtatcagcagaccacaggtg
gcctctaaggacttcatggctatgaagcgctcccagctctatgggatgggcaacaacccc
tactctcagcagcagcagggtgggccctatcccaaccagccatacggatcgcccactcca
caccgatacccaatggggatgcaggggaggggccaggtgggcattggcgggatgcagtac
cctcaacagcagcagggtcccccccagtatggccagcagggtataggaggatacagccag
cagcagcagcaagcagggaacgacccgggaccctacttcagtcccccccagcagaaccct
acccccccttcacagnccccctacctgccaccccacgccccacctcagcaggaggctcct
cgggagagttacggaggaaggagtcagcagcaagccccagggaattctgggaaggccaac
caagaggacatgggtctaatctcgcaggaccgcccctccagtctcccagacctgtctggc
tccatagatgacctccctacaggtacagaagctggtcacagttcagccatcagtgctaca
ggctccaccagtagccagggggagcagagtaacccagcccagtcacccttctcaccccac
gcgtcaccccacctgtctagtcaaggcagcggcccatcgtcctctcctgttgggtcccct
gtgggctccaaccaatcacgctccggctctggccccatctcccctgtcagcggcccaacc
acagcaccaggttcccagatggccccccagactcctggcaacatgttggatgttccccaa
ccccccttgacccagtcccccatgcctcaggaaaggggctttatgtccaacatgcagaga
aaccagtctggctcccagtttgcaccaccacctcagtcggggccctccatgtcccctcac
ccctctcctggtcctgggggacagatgtacccagggatggggccctacccccatggtggc
tccagtggcccctatggaccccagggatcccaggcaaaccagtatggaccccaaggaaac
tacccacgtccacccaactacggcgggacccccagtgccaactacagcagccccgggcca
ggctctggcatgaccaacagccagggtatgaatgccagcagccccatgcacggccagggt
cccgggcagcctatgggccgcagtcctggtgtgggcagccgcccctaccccaacatggcc
cccagctcccccagtatgccccagccagccggccctgggatgggccctccttcactgggc
aatgtcaaccgcaaggcccaggaggcagccgcggctgtcatgcaggccgcagctaactct
gtacagggcagacagggcagctacccaggccctggcatgaacctgatgggaacagcagga
tctggagccccctacaaccagtcaccaggcaacaactcaggcatgggcacaccacagggt
ccgccctacaacatgccaccctcaggggccgtggggatggctgtgagtgggatgatgaat
cctgatgggaagcagaaaacaggtggcaaggaggagaacatgcccaccaatgaacctcca
aaactaaaggatgggcacagtggatcccagtgtgtctcccagcccaccacccctggtgcc
atgcttgtcccctctcccctgtcccccagcccagccagcctgtcctcctaccatggggat
gacagtgacagcatcagcagccccgtctggccaaagactccctccagccctaagctcaac
tcgtccaccatgactaacgaacgaatcacgcgcctgtatgatatgggtggggagccggag
aggcgtggctgggtggaccggtacctgtccttcatggaggagaggggtacacctgtcccc
caccttcccgccgtgggcaagaagcccctggacctctgcagactctacatggctgtcagg
gagatagggggcctagccctggtgaacaagaacaagaagtggcgtgagctgtccaccaat
ctgagtgttggtacctccagtagctccgccagctgtctgaagaagcagtacatccagtac
ctgtttgcctatgagtgtaaggtggagcgaggagaggaccagccggccgacagcaacact
gggactggcggggaaaacaggaagcaggccaaggtgcagccgccctctcctgctaactca
gggtccgttcagggcccccagaccccccagtcatcaggcagcagctccatggcagagatg
tcaggtgacctgaagcctcccaccccagccaccaccccccagggacaggtcacccccatc
ccagccagcaggagcagtgatgtgagtgtgcaggacccgttctctgaggtgagcgacccg
gccttccagaaacgtaactctctccccctggtgggctctgggggtgtgtaccagcagggg
gtcaacatgccccctaacatgatgatgaggatgcagtacgagaaggaccccttcgttggc
atgagaaaggtggcaggaggggagccctacatgccaggccagatgaccagtggtggcata
caggatatgtatggcaggtctacatcaggcatgggccagcgctccccctacccatatgga
ccaggctacgacaggagaccagaccatctgatggggatggaggggagcatgggccccccc
gggaaccagagcaacatgggaccttccaacagtgagggcagcatttactctcccaacaga
tacccctcccagcagagacacgaaggctacgcgcagcagtaccctggcatgtcatatgga
atgcacccctcagggatgtaccctcaacaacagcgccccatggagagcatgtacgggtcc
ccaggcaagagacatgagggggagatgtacggccccccagcaaagagacatgagggggag
atgtacggccccccagcaaagagacatgagggggagatgtatggccccccagcaaagaga
catgagggggagatgtacggccctccaacaaagagacatgagggggagatgtacggcccc
ccagcaaagagacatgagggggagatgtatgccatgcagtataggggccagcagcctgac
atgtacaaccactacaccactggttactctggacctgagaggaggccaatgcagggccag
ttcccctaccctcccccctatagccgagagcgcatgcaggcctctggccaggggcagcac
cccatgggcccccagatgatgtctggggggccaccctctaacaacggagtggaaggaccc
caggggcccaacatgtggccctccaggacagacatgggttatccctaccccaacagacag
ggggcaccctcccaggtaccgccatacggtcctatggggagaggagatgatttggagggc
cgacccatccaggatggtcagtggcttgggcacggaggccatcgccagtcctcctacatg
tcaggtggtatgacccccatgtcctcccgccagcccccctctgcataccagacctccccc
tccatggccaaccacctgccccgagcccccagccccggctccttccagcgctccatggag
gcacgcatgtcccccaacaaagctgtctttatgggctccatgaagatgccaggcaaacca
gggatgcccatgccagtgcagagtaatgggcacccaggccaagtcgcacctaacctgctg
agagatctcaactaccctctaggatctgtagaggccaccatgcccgttttcaagccacgt
cgcaaaattacctcaaaagacactggaaccccagaggcgtggcgagtgatgatgtctctg
aagtcaggtctgctgggtgagagtacgtgggccctggacaccatcaacattctgctgtat
gatgacagatctgtggcctccttcaccctcacacagttgcctggcttcctggagctgata
gtggagtacttcagacgctgtgtgatggagatctttggcatcctggaggagtatgagata
gggaccatcggccagaataccctccttggggctgaagcctgtgaccagggggaggagctg
acctctgaacccgagatggactgtgagcccagcccaccagagcctgagcaggagcaggag
gtggagaggggggagacggagaagggagaagtagaaaagggggaagagaaacctgttgac
atcacagagaaaatgacagaggaagggatgtcaccccccagtgcaatggaaccagcccct
gagggaacgaaggaggaatctgaagccgagatgaaggtaaagaaggaagagggggagaaa
gaagaggagcgggagaaagaagaggagcgggagaaagaagaggagggggagaaagaaaag
gatggggagaaagaaaaggggaaagagaatgaggagagtgaaaagccaaccgagagtaaa
gaagcctcagctgaaagtaaggaagactctccttatcaggctccttcagagcacgagcca
aggccacaacaggccagcaagtacgacaaattccacgtcaagatcctgcacaaagaggac
ctgattgaggacatgacagagcagctgggtcacgtgacagagttcactagcggactgctc
cactggcaggcaggcgggggtgattccaccgcccacatccaggcctactttgagcggagg
ggagagcactctgacaggatggatggagagagagaggaatgtgccagtctcaataaagaa
caggacacagaggggggaaagcagacagagatgggtatcactgccaccatcgatgatata
ctgtgtgcccggttaggggctttgtcagagggccaccctacccactctgcccccacctac
cccttcaggctgcaccagggagggggccaccagcacatcaccctgctagaggacgagccc
cgctgtctggacgaggctcccctctccacgtcctccccttggcaggactccctggccaaa
cgctgcctctgtgtgtccaacatcatccgcagcctctccttcatccctgggaacgactca
gacatgtcccgtcacccaggcctggtgctgatcctgggcagactgctgctgctccaccac
cagcacccagagaggaagaggacgccccctagctaccagagagaggatgtgcaggagcgg
ggcctggcctgcagtaaggatgagtggtggtggaactgtctcgctacactcagggagaac
accttggtcactctggctaacatctctggccagctggacctgtccctctacccagagacc
atctgcctgcccatcctgaacggcctgctccactggatggtgtgtccctctgccgaggcc
caggaccccttcccctcaggcaccccccactcgcccctcaccccccagagactggtgctg
gagtgcctttgcaagctgagcattcaggacaacaacgtggacctgctgctggccacgccg
cccttcagccgccaggagaagctgtacgctactctggtgcgttacgtgggccagcgtaag
aaccaggtgtaccgcgagatggccgtggccaccctatccaacctggctcaaggagactct
acggcagcacgcgccatcgccatacagaagaatagtgtgggtaacctgatgggcttcctg
gaggatggagtgagcatggcccagtaccagcagaacccccacagcatgctgcacatggcc
caccacccccccatggagccccccagcattaacatgatgtgtcgggctgccaaagctctg
ctggctatggccaaggtggaggagaacaggccagagtttgtcctgtatgagggcagactc
ctggacatctccatctcctctgtgctcaaccagggggtgaccagcatcatatgtgaagta
ctttttcagtttgtaaaaaaattatga
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integrated database retrieval system
