Oncorhynchus tshawytscha (Chinook salmon): 112262345
Help
Entry
112262345 CDS
T05605
Symbol
slit2
Name
(RefSeq) LOW QUALITY PROTEIN: slit homolog 2 protein
KO
K06839
slit 2
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04517
IgSF CAM signaling
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
112262345 (slit2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
otw00536
]
112262345 (slit2)
Glycosaminoglycan binding proteins [BR:
otw00536
]
Heparan sulfate / Heparin
Axon guidance molecules
112262345 (slit2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LRR_8
EGF
LRR_4
Laminin_G_2
LRR_5
Laminin_G_1
LRRCT
LRRNT
LRR_9
hEGF
LRR_1
EGF_TEN
LRR_14
Laminin_G_3
EGF_3
JAG1-like_EGF2
EGF_DL_JAG
cEGF
EGF_TGFA-like
Motif
Other DBs
NCBI-GeneID:
112262345
NCBI-ProteinID:
XP_042171866
LinkDB
All DBs
Position
Unknown
AA seq
1409 aa
AA seq
DB search
DLSENQIQXVPRKAFRGAVEIKNLQLDYNQISCIEDGAFRALRDLEVLTLNNNNISRLSV
ASFNHMPKLRTFRLHSNNLFCDCHVAWLSEWLRQRPRLGLYTQCMSPPTMRGHNVAEVQK
KEFVCTGHQSSLSCSVLQCPDSCTCSNNIVDCRGKSLSEIPDNLPETITEIRLEQNSIKA
IPAGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITEISKGLLEGLFSL
QLLLLNANKIACLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFASLRAIQTLHLAQNPFIC
DCHLKWLADYLQDNPIETSGARCTSPRRLANKRIGQIKSKKFRCSAREQYIFPGTEDYRS
KLGGDCFADLACPEKCRCEGTTVDCSNQKLTKIPEHIPQYTQELRLNNNEFSVLESLSLH
SNLSNNRISDIEEGTFEGATGVNELILTSNRLENIHQGMLQGLNGLRTLMLRSNRIRCVS
NSSFVGLSSVRLLSLYDNLITSMTPGAFDTLHALSTLNLLANPFNCNCHLAWLGDWLRRK
RIVTGNPRCQNPYFLKEIPIQDVAAQDFTCDDGNDENSCSPVLRCPAECSCLDTVVRCSN
KGLSTLPKGLPKDTTELYLDGNQLTQVPVELSNYKHLTLIDLSNNQISTLSNYSLSNMTE
LLTLILSYNRLRCVPVRAFDGLKSLRLLSLHGNDISVIPEGAFKDLASLSHLALGANPLY
CDCRMQWLSDWVQSGYREPGIARCAGPGDMTDKLLLTTPSKKFTCTGPLDVSIQAKCDPC
LSNPCHNDGTCSNHPVTFYRCSCPYGFKGQDCEEPLHACIGNPCQNAGTCHLKEGERSNS
WCVCGGFAEGGDVCEINVDDCEDNDCENNSTCVDGVNNYTCMCGLEYTAATNEVERGELC
EEKFDFCAPELNPCQHDSKCILTLQGYKCECTPGYVGDQCELDYDDCEENKCQNGAQCID
AVNGYTCVCPEGYSGLFCEFSPPMVLPRTSPCDDHECMNGAQCVVVETDPRCQCLHGYEG
EWCETLASVNFVNRRSYLQLPSSLITPETNITLQIATDEDSGVLLYKGDKDHITIELYRG
RLRVSYHTGTNPASAIYSVETVNDGVFHVVELVASDQTVSLSIDGGPVKSINSLSKQSTL
SIDSPLYLGGMPDRWSVSAALQSGVGGQNGTSFHGCLRNLYINGQLQDLGAGLEQGQTGV
EAGCQPCQAGVCGQGECHPTGQRGFSCTCHPGWTGDRCQDQVNNPCDGNKCIHGSCLPIN
SYSYSCRCQPGFLGVLCDEADQEVLDPCQLTRCKHGKCRLSGLGKAYCQCNPGYMGDACD
REVVCRGERLRAVYQLQRGYSACETQEKVSRLECRGSCPEGAEGGGGSGCCSPLRSKRRK
YTFHCTDGSSFVQEVEKVVKCGCTKCPPS
NT seq
4231 nt
NT seq
+upstream
nt +downstream
nt
tgatctcagtgagaaccagattcaangggttcccaggaaagccttcaggggagccgtaga
aataaagaacctccagctggattataaccagatcagctgtatagaggacggagcgttcag
agctctacgagacctggaagtactaactctgaacaacaacaatataagtcgtctgtcggt
ggctagtttcaaccacatgcccaaactgagaacctttcgtctccactccaacaacctgtt
ctgcgactgtcacgtggcctggttgtcagagtggttgaggcagcgtccccgtctgggtct
ctacacacagtgcatgtcccctcctacaatgaggggacacaacgtggctgaggtccagaa
gaaagagtttgtttgcacaggccaccagtcctccctctcctgcagtgttctccagtgtcc
ggactcctgtacctgcagtaacaacatagtggactgtagaggaaagagcctttctgagat
acctgacaacctgcctgagaccatcacagagattcggttggaacagaattctatcaaggc
tattcctgctggagccttctctccttacaagaagctacgcagaatagatctcagtaataa
ccagatatcagaactggcaccagatgctttccaaggcctgagatctctcaactctctggt
gctctacgggaataagatcacggaaatctccaaaggattgttggagggactgttttctct
tcagctactgctgttgaatgctaataagatagcgtgtctgcgtgtcgatgcgttccaaga
ccttcacaacctcaacttgctctctctatacgacaacaaactacagaccatcgctaaggg
aacgtttgcttcactacgagccatacagaccctccacctcgcccagaacccatttatctg
tgactgccatctgaagtggttggcagactacctccaagacaacccgattgagaccagcgg
agctcgctgcacctccccccgtcgcctcgccaacaaacgcatcggacagatcaagagcaa
gaagttccgctgttcagctagagaacagtatatcttcccaggtacggaggactaccgcag
taagctgggaggagactgttttgccgacctggcctgtccggaaaagtgtcgatgcgaagg
gaccacggttgactgttccaaccagaagctgaccaagatacctgaacacatccctcagta
cacacaggaacttcgtctgaacaacaatgagttttcagtgctggagtctctgtctctcca
tagtaacctcagtaacaaccgtatcagtgacatagaggaggggacatttgaaggagcgac
gggagtcaatgagttgatcctgacttctaacagactggaaaacatccaccagggcatgtt
acagggtctcaacggactacgcacacttatgttgaggagtaaccgtattaggtgtgttag
taacagcagctttgtgggtctgagttctgtcagactgctgtcactctatgacaacctgat
cacctctatgaccccgggagccttcgacacactacacgcgctgtccacactgaacctgct
ggccaatcccttcaactgtaactgtcacctggcatggcttggtgattggctgaggaggaa
gcgtatcgtcacgggcaacccccgctgtcagaacccttacttcctgaaagaaatccctat
acaggatgtagccgcacaggacttcacctgcgacgacggtaatgatgagaacagttgtag
tccagtgttgaggtgtcctgcagaatgcagctgtctggatacagtggttcgctgtagtaa
caagggcctcagcaccctgcctaaaggactgcccaaggacaccacagaactgtatctgga
tggtaaccaactcacacaggttccagtggaactctcaaattacaagcacttaacactcat
tgatctgagtaacaaccaaatcagcacgttgtccaactacagcctgagcaacatgacaga
actactgacactaatcctaagctacaaccgtttgaggtgcgtaccagtcagggccttcga
tggactcaagtctctacggttactgtctctccatggaaacgacatatctgtgataccgga
gggagctttcaaagacctggcctcgctctctcacctggctctgggggccaaccccctgta
ctgtgactgtaggatgcagtggctgtctgactgggtgcagagtgggtatagggaaccggg
tatcgcccgctgtgccggtcctggagacatgacagacaaactactgctgaccacaccgtc
caagaagttcacctgcacaggtcctctagatgtgagtatccaggcgaagtgtgacccgtg
tctctccaacccctgtcacaacgacggtacctgctccaaccaccccgtcaccttctaccg
ctgtagctgcccctacggattcaagggtcaggactgcgaggaacctctccatgcctgtat
cggtaacccctgtcagaacgctggtacctgtcatctgaaagaaggggaacgcagtaactc
ctggtgtgtgtgtggagggtttgcggaggggggggatgtgtgtgagatcaacgttgacga
ctgtgaagacaacgactgtgagaacaactcaacctgcgtcgacggagtcaacaactacac
ctgcatgtgtggcctggagtacacagctgctaccaatgaggtggagagaggtgagctgtg
tgaggagaaatttgatttctgtgctccagagttgaacccctgccagcacgactccaaatg
catcctgacccttcaggggtacaagtgtgagtgtaccccaggctacgtgggggatcagtg
tgagctggactatgatgactgtgaggagaacaagtgtcagaacggagctcagtgtattga
tgcggtcaacggatacacctgtgtctgtcctgagggatacagcggtctgttctgtgagtt
ctctcctcccatggttctgccgcgcaccagtccctgtgacgaccacgagtgtatgaacgg
agcgcagtgcgttgtcgtggagacggacccccgctgtcagtgtctccatggttacgaggg
cgagtggtgtgagacgctagccagtgtcaactttgtcaaccgacggtcttacctgcagct
gccctctagtctaatcacacctgagacaaacatcacactacagattgctacagatgagga
cagtggtgtgttgctgtataaaggagacaaggaccacattaccatagagttgtatagagg
acgtctccgtgtcagctaccacactggaacaaaccctgcctctgctatatacagtgtgga
gacagtaaatgatggtgtattccatgtggtagagttggtggcatcagatcagactgtgtc
tctgtctattgatggaggaccagtcaagtctatcaactctctgagtaaacagtcaacact
cagcatcgattctcctctatacctgggaggtatgccagatcgttggtcagtctctgcagc
gctgcagtctggagttggggggcagaacgggaccagcttccacggctgtctcaggaacct
ctacatcaacggacagctgcaggatctgggggccgggctggagcagggacagactggggt
tgaagcgggatgccagccatgccaggcaggtgtgtgtggccagggtgagtgccacccaac
cggtcagagaggcttctcctgtacctgccaccctgggtggaccggagaccgttgtcagga
ccaggtcaacaacccctgtgatgggaacaagtgtatccatggttcatgtcttcctatcaa
ttcctactcctactcctgtcgctgccagccaggattcctcggggtgctgtgtgacgaggc
agaccaggaagtgctggacccctgtcagctgaccaggtgtaaacatgggaaatgtaggct
gtctggcctgggcaaggcctactgtcaatgtaacccaggatacatgggggacgcctgcga
cagagaggtggtctgtcgaggggaacggctccgagctgtctaccagctccagaggggcta
ttcggcgtgtgaaacccaggagaaggtctcccgtctagagtgccgtggctcctgtccgga
gggggctgaaggggggggcgggagcggctgctgctcccctttacgttccaaacgcaggaa
atacaccttccactgcaccgacggctcctccttcgtacaggaagtggagaaggtggtgaa
gtgcggctgtacaaagtgtcctccctcgtaa
DBGET
integrated database retrieval system
