Oncorhynchus tshawytscha (Chinook salmon): 112262432
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Entry
112262432 CDS
T05605
Name
(RefSeq) LOW QUALITY PROTEIN: afadin-like
KO
K05702
afadin
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04520
Adherens junction
otw04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04520 Adherens junction
112262432
04530 Tight junction
112262432
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DIL
RA
PDZ
PDZ_2
PDZ_6
Motif
Other DBs
NCBI-GeneID:
112262432
NCBI-ProteinID:
XP_042186539
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All DBs
Position
LG11:complement(16481523..16512934)
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AA seq
1287 aa
AA seq
DB search
MAGKEEWQRLADIIQHWNNTRLDLFEISLPCKNLEFHGVMRFYFEDHVAGNVATKCLRIS
STTTTGEVIETLSEKFRPDMKMLNTPYFLFEVHANKEERQLDLSEKPLVVQLNWNTHNGE
GRFVLKKDQDIWPLSIQDNSPEKKKGGMIQNFKRTLSRKEKKKEKKKTGDDAVNHSAKPN
GSTMRKENGQISASVPVEKSWTNKDIVSNPDTTECKKSSTWRGMVRKHNQQQDYGTRNER
DQDNMDQLALPVGIKFRENSEDPFLSAVINYTNSSTVHFKLSPAYVLYMAGRFVLHRHYS
HSQETSQSHRPSEHTHRVTATVNKMVAMTEVVIQKQKSIAGAVAFWMANASELLNFLKQD
RDLSPITLQAQENLAHLVYKAFKCLTQCLLADLSRHLPEFLIYPEGSHSPAGIEGVLQTL
MGAMSLLRHCRVNAALTIQLFSQLFHSISAWLFNRLLSPSPQGEACSLGLRSHYWGATLR
QRLSLVEDWAERQGLELAADCHLSRIIQVTMLLTMNKYSMQDSENIQNTCFKLNSLQLRT
LMTSYLYDTNEPRIAPGVIDRVVAAAEASADEMLRNEGHDLQLEEGPDLHLPFLLPEEGY
SCDTVNGIPQGFREFLEPICRKGLCTLMSHPQSGGTWTIFFNRANYLFSFSFIXPLHREL
EVVTITLTKPLNSGMGVSIVAAKGAGQDNLGIYVKSIVKGGPAEMDCRLTAGDQLLCVDG
HSLVGLSQERAAGIMMHTGSVVTLQVAKQGATCHGLAALLDEPPSVSTTALDGSGPTSSS
HAKPNGKALIVYDGMEQSSGPSGLWGNNSHGGNRRQREQTLLKNRQLYCSNPNMISPEGE
PVDPAIPTDSKITAVSTSNLLCSDMYQREYLTLPAPRSQDRKTVAFELPPQEPRVSFNLD
GQISNKRTLMRQALSQENLCMENDRPLVDNTHNAWNQNQQESYYTSFPMKPSISTHDIHY
NHTVSLSTKTQPSHHNTRYGYWRTPTSHDPSSAIQPIHIDIPATRLSNTQPRSPMTTFQQ
TPTLLPVKMNQNPEGKGQGQALLSNQKQGSHYQLPAQHRQATCPPPSSVSMRQPQPSLSS
SQKIQQQQALRRVQTATSQLFPTQSKDTSLQRPPAKPQPGTTPGHQDQYFSMNKEPPSEG
NKSLSPDPWKRDAWEKQQKQQRLQVVDLLEQEIQDLQAKAQLTPEETDRLRRLNLEWQFQ
QRLQEFQQNGNDDDDEDDDEEEDRDTSTGENVQESNELNVNFDEKSSKEGQKENNFKGDA
TPENLTFKERQRLFSLGSNASIKVKAL
NT seq
3864 nt
NT seq
+upstream
nt +downstream
nt
atggcagggaaggaagagtggcagagattagctgacatcatccaacattggaacaacacc
cgactggacctgtttgagatcagtctgccatgcaagaacttagagttccatggagtgatg
cggttctactttgaggaccatgttgcagggaacgttgccaccaagtgcctgcgaatcagc
agcaccaccaccactggagaggttattgaaacactgtcagagaagttcagaccggacatg
aagatgttgaatactccctatttcctgtttgaggtccatgctaacaaggaagaacggcag
ctggacctgagtgaaaagcctctggttgtgcagctgaactggaacacacacaacggggag
ggccgcttcgtactcaagaaggatcaggacatttggcctttatccatacaggacaacagc
ccagagaaaaagaagggaggcatgatccagaacttcaagaggaccctgtcgaggaaagag
aagaagaaggagaagaagaagacgggagatgatgctgttaaccactcggcaaagcctaat
gggtccactatgaggaaagagaatgggcagatatcagcttctgtacctgtggagaagtcc
tggaccaacaaggatattgtttctaaccctgacacaacagaatgcaagaaaagttccacg
tggcggggcatggtccgtaagcataaccagcaacaagactatggaacaaggaatgaaaga
gatcaggacaacatggaccaacttgcacttccagttggtattaaattcagggaaaattct
gaggaccccttcctctctgcagtcatcaactacaccaacagttccactgtccacttcaag
ctctcccctgcctacgtcctgtacatggccggacgcttcgtcctccaccgccattatagt
cacagtcaggagacatcacagagtcatcgcccctcagagcacacacacagagtcaccgct
actgtcaacaagatggtagccatgactgaggtggtcatccagaagcagaagtccatagct
ggtgctgtagccttctggatggccaatgcctcagagctcctgaacttcctaaagcaggac
agagatctaagccccatcactctgcaggctcaggagaacctggcacacctggtgtacaag
gctttcaagtgtttgactcagtgtctgctggctgatctgagcagacacttgccagaattc
cttatttatcccgaggggagtcattcacctgcaggaatagagggcgtactgcaaaccttg
atgggtgccatgtctctgctgcgtcactgtcgagtcaacgctgccctcaccatccagctg
ttctcccaactcttccactccatcagtgcctggctcttcaacaggctgctgagccccagc
ccccagggagaggcctgctccctgggccttaggtcccactactggggggccaccctccgc
cagaggcttagcctggtggaggactgggcagagaggcaaggtctggagctggccgcagac
tgccacctcagccgcatcatacaggtaacaatgctgttgaccatgaacaagtattccatg
caagattcggagaacatccagaatacctgcttcaagttaaactccttgcagctccgaaca
ctgatgacaagctacctctacgataccaacgagccccgcattgcccctggtgtgattgac
agggtggtggcggctgcagaagccagtgctgatgaaatgttgcgtaatgaagggcatgac
ctccagctggaggaggggccagacctccacctgcccttcctgctccctgaggaaggctac
tcctgtgacacggtcaatggcatcccgcagggcttcagagagttcctggaacctatctgc
cgcaaaggcctctgcactctgatgtctcacccccagtctggtggcacctggaccatcttc
ttcaaccgagcaaactatctcttctctttttctttcatttagccactgcatagagaactt
gaggttgtgactattacactgacgaaacccttgaacagtggaatgggggtcagcatcgtg
gcggccaagggagcaggacaagacaaccttgggatttacgtcaagtctatcgtcaaagga
ggaccagcagaaatggattgcaggttaactgctggggatcagttgctgtgtgtggatgga
cacagtctcgtgggcctctcacaggaaagggcagcaggcataatgatgcacactgggtca
gttgtgactttacaggttgccaagcagggagcaacatgccatggtctggctgccttgcta
gatgaaccaccttcagtatcaactacagctttggatggtagtggccccaccagcagcagc
catgctaagccgaacggcaaggccctgatcgtgtatgacggcatggagcagagctctggg
ccctcaggactatggggtaataactcccatggagggaacaggagacagagagaacagacc
ctgctgaagaacagacagctatactgctccaaccctaacatgatcagcccagaaggagaa
ccagttgacccagccatcccaacagacagtaaaatcactgcagtctccaccagcaacctt
ctgtgctctgatatgtaccaaagggaatacctgactctaccagcccctaggtctcaggac
aggaagacagtagcctttgaactcccacctcaggagcccagagtctcatttaatctagat
ggacagatctccaacaagaggaccttgatgcggcaggccctttcacaggagaatttgtgc
atggagaatgatcgccccctagtggacaatacacataatgcatggaaccagaaccagcag
gaaagctactacacctcctttcctatgaagcctagcatctctacccacgacatacattac
aaccatactgtcagcctctccactaagacccaaccgagccaccacaacacacggtatggc
tactggagaactcctacgtcacacgacccttcgtctgccatccagccaatacacatagac
atccctgctacacggctttccaacacccagccgcgcagtccaatgactactttccaacaa
actcccactctactgcccgtgaagatgaaccaaaaccctgagggtaaaggccagggacaa
gccctcctcagcaatcaaaaacaggggtctcattatcaactgccagcccagcatcgccaa
gctacatgtcctcctccatcctctgtgtccatgaggcaacctcagccctcactctcatcc
tcacagaagatccaacaacaacaagccttgaggagggtgcaaacagcgacgtcccaactg
ttcccaacccagtcaaaagacacatccctccagagacctccagctaaaccacaaccaggg
accaccccaggacatcaggaccaatacttcagcatgaataaagagccaccatcagaaggc
aacaaaagtctgtctccagacccatggaagagggatgcatgggagaagcagcagaagcag
cagagactacaggtggtcgacctgttggaacaggagatccaggatctgcaggctaaagcc
cagctcacaccagaggagaccgacaggctccgtaggctcaacctggagtggcaatttcaa
cagagactgcaggagttccaacagaatggaaacgatgatgatgatgaggatgatgatgaa
gaagaagatagagacacgtcaacaggagaaaatgttcaagagtcgaatgaactcaacgta
aactttgatgagaagtcctcgaaagaaggccagaaagagaacaacttcaaaggtgacgca
acacctgagaatctcacatttaaggagcgccaacgtctcttctccctcggatcaaacgcc
tccatcaaagtcaaagccttgtaa
DBGET
integrated database retrieval system
