Oncorhynchus tshawytscha (Chinook salmon): 112262448
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Entry
112262448 CDS
T05605
Name
(RefSeq) neuronal PAS domain-containing protein 3-like isoform X1
KO
K09098
neuronal PAS domain-containing protein 1/3
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
otw03000
]
112262448
Transcription factors [BR:
otw03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
112262448
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAS_3
bHLH_HIF1A
PAS
PAS_11
PAS_9
PAS_4
HLH
Motif
Other DBs
NCBI-GeneID:
112262448
NCBI-ProteinID:
XP_042185857
LinkDB
All DBs
Position
LG11:complement(22494891..22844697)
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AA seq
1030 aa
AA seq
DB search
MIRIFPDFSVQVTAAGGGAGGMPSGPAVGRIPGTTNGNPQNVQGITSYQQREIKTLHPFC
MEGSEEEAIVDAQFMSKFPHDPYWERPANASSCSASRPKTLHLGGGQQHTSSPWLQALRK
EKSRDAARSRRGKENFEFYELAKMLPLPGAITSQLDKASIIRLTISYLKMRDFANQGDPP
WNLRIEGPPPNTSVKAIGVQRRRTPSAVASEIFEPHLGSHILQSLDGFVFALNKEGRFLY
ISETVSIYLGLSQVELTGSSVFDYVHPGDHVEMAEQLGMKLPPGRGLLSQGTATEDGASS
ASSSSHAETPEPVESTSPSLLSPDNTLERSFFIRMKSTLTKRGVHIKSSGYKVIHVTGRL
RIRMALTHSRSVPIQIMGMVVVAHALPPPTINEVRIDCQMFVTRVNMDLNIVYCENRISD
YMDLTPVDIVGKRCYQFIHAEDVEGIRHSHLDLINKGQCVTKYYRWIQKNGGYIWIQSSA
TIAINAKNANEKNIIWVNYVLSNPEYKDTPMDIAQLPNLPEKASESSETSDSESESKENS
EDNENSKSDGKGNQTENSEDPETDSKKQQQGQSSSEQEMRRQEEGDSSSNPESQESEDDL
EPSDCELETKERRLGRLGGLHIKVEHYGDRDGRVELHNSPSSSEEEEDDDDDEEDDDDDD
SVKDCDRATEMLAVPAASKQQKRKKRRKKQKWDGSRSRRLRLSSATTSPGTMNHPTLGGG
APLLLPPSPASASVLKIKTEMSEPINFDNDSSIWNYPPNREISRNESPYSMTKHVPTHDT
FPSPQPGSLQVSIPDSVLTPPGTEGGGGGGGTRKGVPPSFNGNSSAPSSASSVASLAPPS
SSGSSSDPLSPPLSASPRDKQQGQGTPTTSNSSSSLLYTSDLEALQRLQAGNVVLPLVHR
VTGTLATTSTAASRVYTTGTIRYAPADVTLAMQAGANLLPNNVAHAMNFVDVNGSPGFGI
DPKTPMEMLYHHVHRLNMAGPFGGAVSGASITQMPAANVFTTAEGLFSTLPFPIYSNGIH
TTQTLERKED
NT seq
3093 nt
NT seq
+upstream
nt +downstream
nt
atgatcaggatcttcccggatttcagcgttcaggtgacggcggcaggtggaggagccggg
ggaatgccatcaggtcctgcggtggggagaatccccggtaccactaacgggaacccgcag
aacgtccaggggatcacgtcctatcaacaaagggaaattaaaaccctacaccctttctgc
atggagggatcagaggaggaggccatagttgatgcccaattcatgtccaaattcccccac
gacccttactgggagaggcccgctaatgccagctcctgttctgcctctaggcccaagaca
ctccaccttggaggagggcaacaacatacctcatcgccatggttgcaggctctgaggaag
gagaagtcccgggatgcggctcgctcgcggcgggggaaggagaactttgagttctatgag
ctggccaagatgctgcccctgcctggcgccatcaccagccagttggacaaggcttccatc
atccgcctcaccatcagctacctgaagatgagggacttcgccaaccagggggacccgcca
tggaacctgcgcatagaaggcccaccacccaacacctctgtcaaagctataggagtacag
cgaaggaggactcccagtgcagtagcctcagagatcttcgagccacacctcgggagccac
atattgcagtccctggatggatttgtatttgcactaaacaaggagggaaggtttttgtac
atctctgagacggtgtccatatacctgggactttcacaggtggagctgacaggcagcagt
gtgtttgactacgtccaccctggcgaccacgttgagatggcagagcagctgggcatgaag
ctgcctccaggccgaggcctcctctctcagggcactgccacagaggacggcgccagctct
gcctcctcctcctcacacgcagagacccccgagccagttgagtccaccagccccagcctg
ctttccccagacaacactctagagcgctccttcttcatccgtatgaagtccacactgacc
aagagaggtgtccacatcaagtcttcaggctataaggtgatccatgttacaggcaggctg
agaatccggatggcattgacccacagtcggtctgtacccattcagatcatgggcatggtg
gtggtggcccacgccctcccccctcccaccatcaacgaggtgcgcatagactgccaaatg
tttgtcacccgggtcaacatggacctcaacattgtctactgcgagaatagaattagcgac
tacatggacctgacgccagtggacatcgtagggaagaggtgttaccagttcattcatgcg
gaggatgtggagggtatccggcacagccatttagacttgataaacaagggacagtgtgtg
accaagtactaccgctggatccagaagaacggtgggtacatctggatccagtccagtgcc
accatcgccatcaatgccaagaacgccaatgaaaagaacataatctgggtcaactacgta
ctcagtaatccagagtacaaggacacacccatggacatcgcccagctgcccaaccttcca
gagaaagcctctgagtcttcagagacttccgactccgagtccgagtccaaggagaactct
gaagacaacgagaactcgaagtcggacgggaaggggaaccagactgagaacagcgaggac
ccggagacagacagtaaaaagcagcagcagggccagtcgtcctcagagcaggagatgagg
cgtcaggaggagggagacagctcctccaacccagagagccaggagagcgaggatgacctg
gagcccagcgactgcgagctggagaccaaggagaggagactaggccgactggggggcctg
cacatcaaggtggagcactacggagatagagatggaagagtggagctgcacaactcgccg
tcctcctctgaagaagaggaagatgatgacgatgatgaggaggatgatgatgacgacgac
agcgttaaagactgtgacagggccactgagatgctcgccgtccccgccgccagcaagcag
cagaagcgtaagaagaggaggaaaaagcagaagtgggacggtagtcgttctagacgcctg
cgcctctcctctgccaccaccagccctggcaccatgaaccaccccaccctgggggggggc
gcccccctcctgctgcccccctcccctgccagtgcatccgtgctcaagatcaaaacagaa
atgtccgagcccatcaacttcgacaacgacagcagcatctggaactaccctcccaacagg
gagatctccaggaatgagtccccctacagcatgacgaagcacgtcccaacccacgacacc
tttccctccccacagcctggcagtctgcaggtctccatcccagactcagtgctcactccc
ccaggaacagagggaggcggcgggggtggaggaaccagaaagggcgtacccccctccttc
aacggtaacagcagcgccccctcctcagcctccagcgtggccagcctggcccctccctcc
agctctggctcctcctccgaccccctgtccccacccctctcagcctcgccgcgcgacaag
cagcagggtcagggcacccccaccacctccaactcctcctcctccctgctgtacaccagc
gacctggaggccctgcagaggttgcaggctgggaacgtggtgcttcctctggtccaccgg
gtcaccggcaccctcgccacgaccagcactgccgcctcccgggtgtacaccactggcacc
atccgctatgcccccgccgacgtcaccttggccatgcaggcaggcgccaacctgttgccc
aacaacgttgcccacgctatgaactttgtggatgtcaacggtagccccggcttcggcatc
gaccccaagacgcccatggagatgctgtatcatcacgtccaccggctcaacatggctggc
ccttttggcggtgctgtgtccggcgccagcatcacccagatgccagcagccaatgtattc
accacggcagagggactgttctctactcttccattccctatctacagtaacgggatacac
accacacaaactctggagcgcaaagaagattag
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