Oncorhynchus tshawytscha (Chinook salmon): 112262561
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Entry
112262561 CDS
T05605
Symbol
rfc5
Name
(RefSeq) replication factor C subunit 5
KO
K10756
replication factor C subunit 3/5
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03030
DNA replication
otw03410
Base excision repair
otw03420
Nucleotide excision repair
otw03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
112262561 (rfc5)
03410 Base excision repair
112262561 (rfc5)
03420 Nucleotide excision repair
112262561 (rfc5)
03430 Mismatch repair
112262561 (rfc5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
otw03032
]
112262561 (rfc5)
03036 Chromosome and associated proteins [BR:
otw03036
]
112262561 (rfc5)
03400 DNA repair and recombination proteins [BR:
otw03400
]
112262561 (rfc5)
DNA replication proteins [BR:
otw03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
112262561 (rfc5)
DNA Replication Termination Factors
ELG1-RFC complex
112262561 (rfc5)
Chromosome and associated proteins [BR:
otw03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
112262561 (rfc5)
DNA repair and recombination proteins [BR:
otw03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
112262561 (rfc5)
Check point factors
HRAD17(Rad24)-RFC complex
112262561 (rfc5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac_C
AAA
DNA_pol3_delta2
Rad17
RCF1-5-like_lid
AAA_11
AAA_14
AAA_22
AAA_24
RuvB_N
AAA_16
AAA_assoc_2
ResIII
DEAD
DUF815
AAA_5
ATPase_2
PhoH
AAA_7
AAA_30
TIP49
AAA_19
AAA_2
Mg_chelatase
DNAX_ATPase_lid
Thioredoxin_6
Motif
Other DBs
NCBI-GeneID:
112262561
NCBI-ProteinID:
XP_024293951
LinkDB
All DBs
Position
LG12:complement(11856966..11864282)
Genome browser
AA seq
335 aa
AA seq
DB search
MASIGKIPLQSRNLPWVEKYRPQTLDDLISHKDILSTIQKFISEDRLPHLLFYGPPGTGK
TSTVLASAKQLYKEKEFNAMVLELNASDDRGIDVVRGPILSFASTRTIFKKGFKLVILDE
ADAMTRDAQNALRRVIEKYTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSQDQMIPRL
EFVIQQESIDVTPDGMKAIVTLSSGDMRRSLNILQSTSMAYGKVTEDNVYTCTGHPLRSD
IANILDWSLNKDFTSAYNQILQLKTLKGLALHDILTEVHLLIHRVDFPPAIRMGLLIKLA
DIEYRLASGTSEKIQLSSMVAAFQAVRDMVVNEAA
NT seq
1008 nt
NT seq
+upstream
nt +downstream
nt
atggcatcgattggcaagataccgttgcagtcaagaaatttgccgtgggttgagaaatac
aggccacagaccctagatgacttgatttctcacaaggacatattaagcaccatccagaaa
tttatcagtgaggacaggctgccacatctcttgttctatggacccccaggcacagggaaa
acatctactgttctcgcctctgccaagcagctctacaaggagaaggagttcaacgctatg
gtcctggagcttaatgcgtcagacgacagaggtatcgatgttgtacgaggacccatcctg
agttttgccagcaccaggaccatattcaagaagggtttcaagttggtgatactggatgag
gctgatgccatgacccgggatgcccagaatgcattgcggcgagtcattgagaagtacaca
gaaaacaccaggttctgtttgatttgtaactacctgtctaagatcatcccagccctgcag
tctcgctgcaccaggttccgcttcggacccctgtctcaggaccagatgatacccaggctg
gagtttgttatccagcaggagagcattgatgtaactccagatggaatgaaagctattgtg
accctgtcatcgggagacatgagaagatccctcaacatactgcagagcaccagcatggcg
tatgggaaggtcaccgaggataatgtgtacacctgcactggtcacccactacgatccgat
atcgccaacatcctggactggtcgctaaacaaggactttacttccgcttacaaccagatt
ctccagctgaagacgctgaaaggcctagccctgcatgacatcctgactgaggtccaccta
ctgatccacagagtggacttccctcctgccattcggatgggcttgcttatcaagttggca
gacattgagtaccggctggcctctggaactagtgagaagatccaattgagttcgatggtg
gcagctttccaggcagtgagagacatggtggtcaatgaggccgcctag
DBGET
integrated database retrieval system
