Oncorhynchus tshawytscha (Chinook salmon): 112262641
Help
Entry
112262641 CDS
T05605
Name
(RefSeq) LOW QUALITY PROTEIN: protein patched homolog 1-like
KO
K06225
patched 1
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04340
Hedgehog signaling pathway
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
112262641
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Patched
Sterol-sensing
RepA1_leader
Motif
Other DBs
NCBI-GeneID:
112262641
NCBI-ProteinID:
XP_042187350
LinkDB
All DBs
Position
LG12:complement(17904346..18056913)
Genome browser
AA seq
1532 aa
AA seq
DB search
MASAANASSEQENRDPDRPRITRRNRGNYLSTAPDLEYLQRPSYCDAAFALQQISEGKAT
GRKAPLWLRAKFQRLLFKLGCYIQKNCGKFLVVGLLVFGAFAVGLRAANLETDVEKLWVE
VGGRVNQELKYTRLKMGEESMFSPQLMIQAPRQEGANVLTLEALQQHLDSAISASQVHVY
LFNRQWKLEHLCYKSGEMDTEAHVVNQIIEKLHPCLIITPLDCFWEGAKLQSGMVYLPGI
SHPLQWTNFDPKEFLTGLRALKVQVDSWEVMLEKADVGHGYMDRPCLNPQDPDCPLTAPN
KNTTKPFDLARILTGGCHGLSRKYMHWQEELIVGGTTKNGTGPLLSAQALQTMFQLMTPK
QMFEHLKGYEDMSHINWNQDKAAAILEAWQRKYSEVVKQSVAANSSQKVLTFTTTTLEDI
LKSFSDVSIIRVASGYLLMLAYACLTMLRWDCAKSQGAVGLAGVLLVALSVAAGLGLCSL
LGISFNAATTQVLPFLALGVGVDDVFLLAHAFSETGQNKRIPFEDRTGECLKRTGASVAL
TSISNVTAFFMAALIPIPALRAFSLQAAVVVVFNFAMVLLIFPAILSMDLYRREDRRFDI
FCCFYSPCVNRVIQIEPQVHVDGADSSRYSXPPPSYHTTPPTYSSSPPSYSSHGFSQQTQ
ITMQSTVQLRTEYDPRTQAFYTTAEPRSQISVQPFTPTPVATGPANNPNTSHGNNNHHSN
HLSRSGSSSGHVNNHGSRGSGSVPSPPQSSSGIPTVSPQAGEVLCVSGESASSTRDLLSQ
FGGASLGLRCLEPHCSQWTLASFAEKHYAPFLLQPTTKVVVILLFLALLVVSLYGTTRMR
DGLELTDIVPRETSEYDFIGAQFKFFSFYNMYVVTQRAEYSQAQPLLYQLHHSFNTVRYV
LREDDGQLPRMWLHYFRDWLQALQEAFDQDWEAGWITQSSYRNGSDDGVLAYKLLVQTGR
RERPISVNQLTRQRLVDADGIINPVAFYIYLTAWVSNDPVAYAASQANIRPHPPEWLHDR
TDSMLETRLSIPAAEPIEYAQFPFYLNGLRETPQFVEAIESVRAICSNYSRQGLPSYPNG
YPFLFWEQYVGLRHWLLLCISVVLACTFLVCALFLLNPWTAGIIVLVLSLMTVELFGMMG
LIGIKLSAVPVVILIASVGIGVEFTVHVALAFLTAIGDRTRRAVLALEHMFAPVLDGAFS
TLLGVLMLAGSEFDFIVRYFFAVLAILTILGVLNGLVLLPVLLSYFGPYPEVTPVDGRSQ
LPTPSPEPPPPVVHFSVHPCHTTSGTGTGTGSDSSDSEYSSNTTALGISQDLQQYNLPTT
RSRAGRAEEVRRGAVPRRTARQGNATAYSLSSSVLPESDAHPGASRRFSKRDLQSLPPAG
PRMEAFETEAGGHYGSGGHFVSGGHRERSAGHRTRPSHNPRPNHHQPHHSNPAPTYCQPI
TTVTASASVTIAVHSTSPPTQSPTSSYPGHTAADSYHTARGPEPEPAFQHPHVPLEVHTG
CRGTKMDTKEEAMELQDVECEAAESDCDKRAS
NT seq
4599 nt
NT seq
+upstream
nt +downstream
nt
atggcctcggcagctaatgcctcctctgagcaggaaaacagggaccccgatcggccgagg
ataacgcggaggaacagggggaactatctctcaacagcgcctgatttggagtatttgcag
cggccaagttactgcgatgcagctttcgccttgcagcaaatatccgaggggaaagcgact
ggaagaaaagcaccgctgtggctgagagcgaagtttcagagactcttgtttaaattgggc
tgttacatacaaaagaactgtggaaagtttttggttgtgggcctattggtattcggagct
ttcgctgttggcttacgggcagctaatctggaaaccgacgtggagaaactctgggtagaa
gtgggcggcagggtgaatcaggagctgaaatacacacgtctgaagatgggcgaggagtcc
atgttcagtccccagctgatgattcaggcaccgcgccaggagggcgctaacgtgctcact
ttggaggcgctacaacaacacctggactcagccatcagtgccagccaagtgcacgtttac
ctctttaacagacaatggaaattggaacatttatgctacaaatcaggagaaatggatact
gaagctcatgttgtgaaccagatcattgaaaagctccacccctgtctcatcatcactccg
ctggactgtttctgggagggagccaagctccagtctggaatggtctacctccctggcata
tcacaccctctgcagtggaccaactttgaccccaaggagttcctgacagggcttcgggct
ctgaaggtccaggtagacagctgggaggtgatgctggagaaggctgacgtgggacatggc
tacatggaccggccctgtctcaacccccaagaccccgactgtcccctcactgcccccaac
aagaacaccaccaagccctttgacttggctcgcatcctgactggcggctgccatggcctc
tccaggaagtacatgcactggcaggaagagctgattgtaggggggaccaccaagaacggc
accggaccactactcagtgcccaggcgttacagaccatgttccagctgatgacccctaag
cagatgtttgagcacctgaagggctatgaggacatgtcccatatcaactggaaccaagac
aaggccgcagccatactggaggcctggcaaaggaaatactcagaggtggtaaagcagagt
gtagcagccaactcgtctcagaaagtgttgacgtttaccaccaccactctggaagacatc
ctcaagtctttctctgatgtcagcatcatacgagtggccagcggctacctgctcatgttg
gcctatgcctgtctgaccatgctacgctgggactgtgctaagtctcagggagccgttgga
ctggctggtgtcctgttggtggcgctgtctgtggctgcaggcctggggctctgctctctg
ctgggtatatctttcaacgctgccaccacacaggtgcttccgttcctggcactaggtgta
ggtgtggatgatgtgtttctcctggcccatgccttcagtgagacgggacagaacaagagg
atcccatttgaggaccgtacaggagagtgtttgaagaggacaggggctagtgtagctctc
acctccatcagtaacgtcactgctttcttcatggcagctctcatccctatacctgcccta
cgagccttctctctacaggctgcggtggtggtcgtgtttaactttgctatggtgctgctc
atcttccctgccatcctcagtatggacctgtatcgcagagaggaccggcgttttgacatt
ttctgctgcttctacagcccttgcgttaacagggtgatccagatcgagccccaggtccac
gtggacggagcggacagcagtcgctacagcnncccccccccctcctaccacaccacccct
cccacatacagcagctcacccccgtcctacagcagccatggtttctcccagcagactcag
atcaccatgcagtctactgtccagttgaggacagagtacgaccccaggactcaggccttt
tacactacggccgaacccagatcgcagatctccgtacaacccttcacacccacgcctgtc
gccactggccccgccaacaaccccaacaccagtcacggaaacaacaaccaccacagcaac
catctcagccggagtgggagtagcagtggtcacgtcaacaaccacggtagccgtggttca
ggctcggttccttctcctccccagtcatcctctggcatccccactgtctccccccaagcg
ggggaagtgctgtgtgtgtcgggggagagtgctagctccaccagggatctgctgtcccag
tttggaggggcctctctggggctgcgctgtctggaaccccattgctcccagtggaccttg
gcctcctttgccgagaagcactacgcccccttcctactgcagcccaccaccaaggtggtg
gtcatcctgttgttcctggccctgctggtggtcagtctgtacgggaccacacggatgcgg
gacgggctggagctgaccgacatcgttcccagggagaccagtgagtacgacttcatcggg
gcccagttcaagttcttctctttctacaacatgtacgtggtgacccagcgggcggagtac
tcccaggcccagccactgctctaccagctgcaccacagctttaacacagtccgctatgta
ctgagagaggacgacggacagctaccacgcatgtggctccactacttcagggactggttg
caagctctgcaggaagcatttgaccaggactgggaagcaggttggatcacacagagcagc
tacaggaacggttcagacgacggggtcctggcctacaaactactggtacagaccgggcgc
agggaaaggcccatcagcgttaaccagctgactaggcagcgcttggtggatgcggatggc
atcatcaacccggtggcattttacatctacctgactgcgtgggtcagcaacgatccggtg
gcatacgcagcctcgcaggccaacatacggccccacccccctgagtggctccacgaccgc
acagactccatgctcgagacacggctcagcattcctgctgccgagcccatcgaatatgca
cagtttccattctacctcaacgggctccgcgagaccccccagtttgtggaggccatcgag
tcggtgcgagccatctgcagtaactacagccgccagggcctacccagctaccccaatggc
taccccttcctcttctgggaacagtacgtaggcctcagacactggctgctgctctgcatc
agtgtggtgctagcctgcaccttcctcgtctgtgccctctttctgctcaacccctggact
gccggcatcattgtcctggtcctatctctgatgaccgtggagctgtttggtatgatgggg
ctgatagggatcaagctcagtgctgttcctgtggtcatcctcatcgcctctgtcggcata
ggagtagagttcactgtacatgttgctctagcgttcctcacagcgataggggaccgtacc
agacgggcagtgctggcgttagaacacatgtttgctcctgtgttggacggagccttctct
actctactaggagtcctcatgctggcaggctctgagtttgacttcatcgtcaggtatttc
tttgctgtgctggccatcctgaccattctgggggtgctgaatggtttggtccttctccct
gtgttgctgtcttactttggcccctatccagaggtgacccctgttgatgggcgtagccag
ttacccaccccgtccccagagccccctcctcccgtggtccacttctccgtccacccctgc
cataccacctcagggacggggacaggtacaggctctgactcgtcagactctgagtacagc
tccaacaccacggccttaggcatcagccaggacctgcagcagtacaacctccccaccact
agaagcagagctgggagagcagaggaggtgcgacgaggagcagtaccaagaaggacagct
agacagggaaacgccacagcctactctttgtcttcttcggtcctgccggagtcggatgcc
caccccggtgcatcccgtcgcttcagcaagagggacctacagtcccttcccccagccggc
ccacgcatggaggcttttgaaactgaagctggaggccattacggctccggaggccatttt
gtctcgggaggccaccgagaacgttctgcggggcacagaactcgtccatcccacaacccc
cggcccaatcaccaccaacctcaccactctaaccccgcccctacttactgccagcccatc
accacggtaacggcctctgcatcggttaccatcgccgtccactctacctctcccccaact
cagagccccacctcctcttacccaggacacactgcagcagacagttaccacacagcaagg
ggcccagagcctgagcctgccttccagcacccccatgtgccactggaggtccatacaggt
tgcagaggaaccaagatggacaccaaggaggaggccatggagctccaggatgtggagtgt
gaggcagctgagagcgactgtgataagagggcaagctga
DBGET
integrated database retrieval system
