Oncorhynchus tshawytscha (Chinook salmon): 112262704
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Entry
112262704 CDS
T05605
Name
(RefSeq) armadillo repeat protein deleted in velo-cardio-facial syndrome isoform X1
KO
K28154
splicing regulator ARVCF
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
otw03041
]
112262704
Spliceosome [BR:
otw03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
112262704
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Arm
ARM_ARMC5
HEAT_2
HEAT
Arm_2
Cnd1
Atx10homo_assoc
Motif
Other DBs
NCBI-GeneID:
112262704
NCBI-ProteinID:
XP_024294170
LinkDB
All DBs
Position
LG12:complement(21842961..22066600)
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AA seq
1106 aa
AA seq
DB search
MEDYDVRSAASILASVKEQEARFERLTRALEEERRNVSLQLEHSNVPPDRLGGTGPSANL
PPNSQPLAWQQVVMQEQSPSNQTSLAMMQEPQEMVEETVTIEEDPGTPTSHVSVVTSDDG
TTRRTETKDMSTNLKVTKVIKTITRRRYLPVTLTETLVVPGGSITPQSKPSTPVPTPSPT
PSPSETDPVKKTKAPKRLVTKMVKTVTTRTVRQVPLGPDGLPLPEGSSPLGSYTDSIDRR
YLKNGERYITTPQATSTLTRSYNNYNDSYSDALPPDAGGSQYGGRHYGLHDGYGIGDATD
NYGSLSRGVNFRPPRYPYAMANSYRPENSYGTLPIRKDDYGHVAQPQVPMGSSSVDLNRS
QPERFQPEPYGLEDDRRSLGPEEEEPYDLEPDYSTASRRQGTLPGTNRGRTMREPLRDGP
RIRGYEDPIEAEMIDERHPYIHGMYPAPLAQPERGSMASLDRLAGRRSPSIDSIRKDPRW
RDPDLQEVIAMLGHPIDPVKSNAAAYLQHLCYENDKIKKDVRQLKGIPVLASLLDHPKAE
VHRKACGALRNISYGKDHDNKVAIKNCDGIPALVRLLRKTNDMEVRELITGTLWNLSSFE
PLKMVIINHGLQTLTNEVIIPHSGWEHEPNEDSKPRDAEWTTVFKNTSGCLRNVSSDGAE
ARRRLRECEGLVDALLHALQSAVGKKDMDNKSVENCVCIMRNLSYHVHKEIPGAEKFTDP
SVLQAPSSAGPQRKKKDDAGCFGGKKAKEEWFNQARKNGENDKNYDTLDLPKRTEPTKGF
ELLYQPEVVRLYLSLLTESQNYNTLEAAAGALQNLSAGQWTWSNYIRATVRKEKGLPILV
ELLRSDSDKVVRAVAIALRNLSIDRRNKDLIGSYAMRDLVSNLPSGQQRPAKNLEEDTVV
AILNTIHEIVTDSSENARSLIQAQAIEKLVAINKTSQSPREDKAASHVLQTVWSYKDLRN
ALTKEGWNKSHFQPTATGAPKAAKNGKPGYDDTTLPLMEKNQGQSVMAGETGDPPGLAYC
GELSTKKNGSGDMIPMDELGPDGYSTIDQRDKDCKYKSSGDGSVDLSEREPLKNDTNRKH
YVRSNRPAVKLVDACDVKPQPVDSWV
NT seq
3321 nt
NT seq
+upstream
nt +downstream
nt
atggaggattatgacgtgcgctcggccgccagtatcctggcctcggtgaaagagcaggag
gcacgcttcgagcgtctgacccgggccctggaggaggagcgacgcaacgtctccttgcag
ctggagcattccaatgtaccccccgacaggttgggagggactgggcctagcgctaaccta
ccacccaacagccaacccctggcctggcagcaggtggtgatgcaggagcagagccccagt
aaccagacgtctctggccatgatgcaggagccccaggagatggtggaggagacagtcacc
atcgaggaggaccctggcacgcccacctcccatgtgtccgttgtcacctccgacgacggc
accacacgacgcacagaaaccaaggatatgtcaactaacctgaaggtgaccaaggtgatc
aaaaccatcacccgtcgcaggtacctgccagtgaccctcacagagaccctggtggtgcca
ggaggttccatcaccccgcagtccaaacccagcaccccggtgcccaccccttctcccacc
ccctccccatcagagactgacccagtaaagaaaacaaaggcacccaaacgtctggtgact
aagatggtgaagacggtgaccacgcggacggttcgccaggtgcccttgggccccgacggc
ctgcccctgcctgagggctcctccccgctgggcagctacacagactccattgaccggcgc
tacctgaagaacggcgagcgctatatcaccacgccgcaggccacctccacactcacacgc
tcctacaacaactacaacgactcctacagcgacgcactcccccccgacgctggtgggagt
cagtacggtgggcgccactacggcctccatgacggctacggcattggagatgcaacggac
aactatggcagcctgtcccgcggagtcaacttccggccaccccgctacccctacgctatg
gctaacagctatcggccagagaacagctacgggaccctacccatccggaaggatgactac
ggccacgtggcccagccccaggtccccatgggcagcagcagtgtggacctgaaccgttcg
cagccagaacgcttccagccagagccctacggactggaggacgaccgccgcagcctgggc
cccgaggaggaggagccctatgacctggagcctgactactccactgctagccggcgccaa
ggcacgctgccaggcaccaaccgcggcagaaccatgagagagccgctccgcgacgggcca
cgcatcaggggttacgaggatcccatcgaggcggagatgattgacgagcgacacccctac
atccatggcatgtacccggcccccctggcccagcccgagagggggagcatggccagcctg
gaccgcctggctggccgccgctcgccctccatcgacagcatccgcaaggacccgcgttgg
cgtgaccccgatctgcaagaggtcatagccatgctgggccaccccatcgacccggtcaag
tctaacgccgccgcgtatctgcagcacctgtgctacgaaaacgacaagatcaagaaagat
gtgcgccagctgaaggggatcccggtgctggcaagcctgctggaccatcccaaggctgag
gtccaccgcaaggcctgcggagccctgagaaacatctcctacggcaaggaccacgacaac
aaggtggccatcaagaactgtgacggtatccccgcccttgtccgcctactgaggaagacc
aacgacatggaggtccgcgagctcatcacagggaccctgtggaacctgtcttcctttgag
cctctgaagatggtgattataaaccacggactgcagactttgaccaacgaggtcatcatc
ccccactcaggctgggagcatgagcccaacgaggactccaaacctcgtgacgcagagtgg
accaccgtcttcaagaacacatcaggatgtctgaggaatgtgagttcggacggggcagag
gcaaggcgcagactaagggagtgtgaggggcttgtggatgctctgctgcacgccttgcag
tcagcggtgggtaagaaagacatggacaacaagtctgtggagaactgtgtgtgtatcatg
aggaacctgtcttaccacgttcacaaagagatcccaggggccgagaagttcacagacccg
tccgttctgcaggccccgagctctgcgggccctcagaggaagaagaaggatgacgcaggc
tgctttggagggaagaaggccaaagaggaatggtttaatcaagccagaaaaaacggcgag
aatgacaaaaactacgatacgctggatctacccaagcgcacagaacccacaaaaggtttt
gagctgctgtaccaaccagaagtggtgaggctgtacctgtctctgctaactgagagtcag
aactacaacactctggaggctgccgcaggggccctgcagaacctcagcgccggacagtgg
acctggtctaactacatccgtgccacagtgaggaaggagaagggtcttcccatcctggtg
gagctactgcgttctgactctgacaaggtggtccgagccgtggccatcgcgctgcgcaac
ctctccatcgaccgccgcaacaaagacctgatcgggagctatgccatgagggacctggtg
agtaacctgcccagcggtcagcagcggccagccaagaacctggaggaagacacggtggtg
gccatcctcaacaccatccacgagatcgtgacggacagctctgagaacgcacgctccctc
atccaggcccaggccatcgagaaactggtggccatcaacaagacaagccaatcaccacgt
gaggacaaggccgcctcccacgtgctgcagacggtgtggagctacaaggacctgaggaac
gccctgaccaaggaaggatggaacaagagccacttccagcctacagcgaccggcgcccct
aaagcagccaagaatggcaagccaggctatgacgacaccactctgcccctgatggagaag
aaccaaggtcagtctgtgatggcaggcgagactggggatcctccgggcctggcctactgt
ggtgaactgagcaccaagaaaaatggaagtggtgatatgatacctatggacgagcttggt
ccagatggctactccaccatcgaccagagagacaaagactgcaagtacaagagtagtgga
gacgggtcagtggacctgtcagaacgcgagccattaaagaatgacacaaataggaaacac
tatgtcaggagtaacaggcctgcagtcaaactggtggatgcttgtgacgttaaacctcag
cctgttgactcctgggtctaa
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