Oncorhynchus tshawytscha (Chinook salmon): 112262770
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Entry
112262770 CDS
T05605
Name
(RefSeq) clathrin heavy chain 1 isoform X1
KO
K04646
clathrin heavy chain
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04142
Lysosome
otw04144
Endocytosis
otw05100
Bacterial invasion of epithelial cells
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
112262770
04142 Lysosome
112262770
09160 Human Diseases
09171 Infectious disease: bacterial
05100 Bacterial invasion of epithelial cells
112262770
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112262770
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
otw04147
]
112262770
Membrane trafficking [BR:
otw04131
]
Endocytosis
Clathrin-mediated endocytosis
Clathrin
112262770
Exosome [BR:
otw04147
]
Exosomal proteins
Proteins found in most exosomes
112262770
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Clathrin
Clathrin_propel
Clathrin_H_link
Clathrin-link
TPR_COPA_B
TPR_PEP5_VPS11
TPR_Vps41
Gp18_dom_I
capSnatchArena
IFS
Motif
Other DBs
NCBI-GeneID:
112262770
NCBI-ProteinID:
XP_042187400
LinkDB
All DBs
Position
LG12:24708892..24742582
Genome browser
AA seq
1685 aa
AA seq
DB search
MAQILPIRFQEHLQLQNLGVNPANIGFSYLTMESDKFICIREKVGEQNQVVIIDMADPNN
PSRRPISADSAIMNPTSKVIALKEDAAKCLQIFNIEMKSKMKAHTMTEEVMFWKWISVNT
VALVTEAAVYHWSMEGDSQPIKVFDRHASLAGCQIINYRTDEQQKWLLLIGISAQQNRVV
GAMQLYSVDRKVSQPIEGHAAAFGEFKVEGNTKASTLFCFAVRSQAGGKLHIIEVGHPAT
GNQPFTKKAVDVFFPPEAQTDFPVAMQIGTKHGVIYLITKYGYIHLYDLESGVCIYMNRI
SAETIFVTAPHEPTSGIIGVNKKGQVLSVCVEEENIVNYATNVLQNPDLGLRMAMRSNLA
GADELFARKFNTLFAQGSYSEAAKVAASTPKGILRTAETIRKFQSVPSQPGQASPLLQYF
GILLDQGQLNKFESLELCRPVLQQGRKQLLEKWLKEDKLECCEELGDLVKAVDPTLALSV
YLRANVPSKVIQCFAETGQFQKIVLYAKKVGYSPDWVFLLRNVMRVSPEQGLQFSQMLVA
DEEPLANINQIVDVFMEGSLIQQCTSFLLDALKNNQPAEGHLQTRLLEMNLLHAPQVADA
ILGNQMFSHYDRAHIAQLCEKAGLLQRALEHYTDLFDIKRTLVHTHLLNPEWLVNFFGAL
SVEDSIECLRAMLSANIRQNLQLCVQVASKYHEQLGTNALVDLFESFKSFEGVFYFLGSI
VNFSQDPDVHFKYIQAACKTGQIKEVERICRESNCYDPDRVKNFLKEAKLTDQLPLIIVC
DRFDFVHDLVLYLYRNTLQKYIEIYVQKVNPSRLPVVIGGLLDVDCAEDVIKNLILVVRG
QFSTDELVAEVEKRNRLKLLLPWLESRIHEGCEEPATHNALAKIYIDSNNNPERFLKENT
FYDSTVVGKYCEKRDPHLACVAYERGQCDLDLIKVCNENSLFKSEARYLVRRKDPELWAN
VLEENNPYRRQLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVF
SEHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELFEEAFAIFKKFDVN
TSAIQVLIEHISNLDRAYEFAERCNEAAVWSQLARAQLQRDLVKEAIDSYIKADDPSSYM
EVVSAASKNDNWEDLVKFLQMARKKARESYVETELIFALAKTGRLAELDEFVNGPNNAHI
QQVGDRCFEEGMYDAAKLLYNNVSNFARLASTLVHLGEYQAAVDSARKANSTRTWKEVCF
ACVAGEEFRLAQICGLHIVIHADELEELISDYQDRGYYEELIALLEAALGLERAHMGMFT
ELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQSHLWAELVFLYDKYEEYDNAVLTM
MSHPTDAWKEVQFKDIIAKVANVELYYKSLSFYLDYKPLLTNDLLTILSPRLDHSRAVTY
FTKRNQLKLVKPYLRSVQSHNNKGVNEALNNLLTEEEDYQGLRASIDAYGNFDTIVLAQR
LEKHELIEFRRIAAYLYKGNNRWRQSVELCKKDKLYKDAMLYAAESKDAELAETLLQWFL
EEGRKECFAACLFASYDLLHPNVVLELAWRHNIMDFAMPYFIQVMREYLTKVDEVAEKVT
VDKLEESESQRKTEEKVPEPTPIVFGQQLMLTAGSAPVAPQPGYPGGYGYTPPGYPTQPP
YSYNM
NT seq
5058 nt
NT seq
+upstream
nt +downstream
nt
atggctcagatactgccgatacgatttcaggaacatctgcagctgcagaacctaggggtg
aatccggccaacattgggttcagctacctgaccatggagtctgacaaattcatctgcatc
cgggagaaggtgggtgagcaaaaccaggtggtgatcatagacatggctgaccccaataac
cccagcaggcgacccatttccgctgacagcgccattatgaaccctacaagcaaggtcatc
gccctgaaagaggacgctgctaagtgcctgcagatcttcaacattgagatgaagagtaag
atgaaggctcacaccatgacagaggaagtcatgttctggaagtggatctctgtcaacacc
gtcgccttggtgactgaagcggccgtctaccattggagcatggaaggggactctcagcca
atcaaagtgtttgatcggcacgccagtctggccggttgccagatcataaactacagaaca
gacgaacagcagaagtggcttctgcttatcgggatctcggcacagcaaaaccgtgtggtg
ggggccatgcagctgtactctgtggacaggaaggtgtcccagcccatcgagggacatgct
gcagccttcggagagtttaaggtggagggcaacaccaaagcctccactctcttctgcttt
gctgtgcgcagccaggctggtggcaagctgcatatcatagaggtgggtcacccggctaca
gggaaccagccatttaccaagaaggcggttgatgtgttcttccctcctgaggcgcagaca
gacttccccgtcgccatgcagattggcaccaagcatggcgtgatctacctgatcactaag
tatggctacatccacctgtatgatctggagtcgggagtgtgtatctatatgaaccgcatc
agcgctgagaccatcttcgtcactgccccccacgaacccacctccggcatcatcggggtt
aacaagaagggacaggtgttgtcagtgtgtgtggaggaggagaacatagtgaactatgca
accaacgtgctgcagaacccagacctgggcctgaggatggccatgcgttctaacctggcc
ggggcagatgagttgtttgccaggaagttcaacacgctgttcgcccagggttcctactcc
gaggctgccaaggtggctgcctccacaccaaagggtatcctgcgtacagcggagaccatc
cgtaagttccagagtgtgccaagccagccgggccaggcctctcccctgcttcagtacttt
ggcatcctgctggaccagggccagcttaacaagtttgagtctctggagctgtgcaggccc
gtgctacagcagggacgcaagcagctgctggagaagtggctgaaagaggacaagctggag
tgttgtgaggagcttggtgacctggttaaggcagtagatcctactctggccctcagcgtc
tacctcagggccaacgtacccagcaaggtgatccagtgcttcgctgagaccggacagttc
cagaagatagtgctttacgccaagaaggtgggctactctccagactgggtgtttctgttg
aggaatgtgatgcgggtcagtccagaacagggtctacagttctctcagatgctggttgca
gatgaggagcccctggccaacatcaaccagatagtggatgtgttcatggagggcagtctg
atccagcagtgcacctcattcctattggacgctctgaagaacaaccagccagccgaggga
cacctacagacacgcctactggaaatgaatctcctccatgctccccaggtggccgatgca
atcctgggaaaccagatgtttagtcactatgaccgagcccacatcgcccagctgtgtgag
aaggctgggctgctgcagagggctctagagcactacactgacctgttcgacatcaaaagg
actctcgtacacacacacctgctcaaccctgagtggctggtgaacttctttggcgccctg
tcagtagaggactctatagagtgtcttcgggctatgttatcagccaacatccgacagaac
cttcagctgtgtgtccaggtggcatctaaataccacgaacagctgggaacaaatgccctg
gtggatctcttcgagtccttcaagagttttgagggtgtgttctacttcctgggttccata
gtgaactttagccaggaccccgacgttcattttaaatacatccaggcggcctgtaagacc
ggacagatcaaggaggtggaacgcatctgtagagagagcaactgttacgacccggacagg
gtcaagaacttcctcaaggaggctaaactgacagaccagctgcctctgatcatagtgtgt
gaccgctttgactttgtccatgacctggttctctacctctaccgcaacactctgcagaag
tacattgagatctatgttcagaaggtgaaccctagccggctgccggtggtgataggaggt
ctgttggatgtagactgtgctgaagatgtcattaagaacctgatcttggtggtgagagga
cagttctccacagacgagctggtggcagaggtggagaagaggaacagactgaagctgttg
ttgccgtggctggagtctcgtatccacgagggctgtgaggagccggctactcacaatgcc
ttggctaagatctacatagacagtaacaacaacccggagcgcttcctgaaggagaacacc
ttctacgacagcactgtagtggggaagtattgtgagaagagagacccccacctcgcctgt
gtcgcctatgagaggggccagtgtgacctggaccttatcaaggtgtgcaatgagaactcc
ctgttcaagagtgaggctcgctacctggtcagacggaaagacccagaactatgggccaat
gttctagaggagaacaacccttatagacgccaactcatagaccaggtggtgcagacagct
ctgtcagagacccaggacccagaggaggtatcggtgactgtcaaggcctttatgacagct
gacctgcccaatgagctcatcgaactactggagaagattgtactggacaactcagtcttc
agcgagcaccgaaacctccagaacctgttgatcctgacggccatcaaggccgaccggaca
cgtgtgatggagtacatcaaccgcctagacaactacgacgccccagacattgctaacatc
gccatcagcaacgagctcttcgaggaggccttcgccatcttcaaaaagtttgacgtcaac
acctccgccattcaggttctgatcgagcatatcagtaacctggacagagcctatgagttt
gcagagcgttgtaatgaggctgctgtatggagtcagctggccagagcccagctccagaga
gacctggttaaagaggccatcgactcctacatcaaagctgacgacccgtcatcctacatg
gaggtggtcagcgcggccagcaagaacgataactgggaggatctggtgaagttccttcag
atggctcgtaagaaggcccgggagtcctacgtagagacagaactcatctttgctctggct
aaaactggcagactggccgaactagatgagtttgttaacggccctaacaatgcccatata
caacaggtgggagataggtgttttgaggagggcatgtatgatgctgccaagctgctgtat
aataatgtgtccaactttgcccgcctggcgtccacgctggtccacctaggagagtaccag
gctgctgtggacagcgccaggaaagccaacagcacacgcacctggaaggaggtgtgtttt
gcgtgtgtggctggggaggagtttcggttggctcagatctgtggtcttcacatcgtcatc
cacgctgatgaactggaggagctcatcagtgactatcaggaccggggctattatgaggag
ctgatagccctgttggaggcagcattgggtttggagcgcgctcacatgggcatgttcaca
gagctggccatcctctactccaaattcaaaccccagaagatgagagaacatctggaactc
ttctggtcccgtgtcaacatccctaaggtgctgcgagcggcggagcagtcccacctgtgg
gcggagctagtgtttctgtatgataaatacgaggagtatgacaatgctgtcctcacgatg
atgtcacaccctactgacgcatggaaggaggtgcagttcaaggacatcatcgccaaggtg
gccaatgtggagctgtactacaaatccctttccttttacctggattacaaacctctgctg
acaaacgaccttctgaccatactgtcaccacggttagaccacagccgggcggtcacatac
ttcaccaagaggaaccagttgaagttggtaaagccttacctgcggtcagtccagagtcac
aacaacaagggagtcaacgaggccctcaataacctactgacggaggaggaggactaccag
ggtctgagggcatcgatcgacgcgtatggtaactttgacaccattgttctggcccagaga
ctggagaagcatgagctgattgagttcagacgcatagcagcatacctctacaaaggcaac
aaccgctggagacagagcgtggaactctgcaagaaggacaaattatacaaggatgcaatg
ctgtatgctgccgagtctaaggatgcagagttggctgagaccctgctgcagtggttcctc
gaggagggtaggaaggagtgtttcgctgcctgtctgtttgcctcctatgacctgctgcac
cctaatgtggtgctggagctggcctggagacacaacatcatggactttgccatgccatac
ttcatccaggtcatgagggagtatctcaccaaggttgatgaggttgcggagaaggtgacg
gtggacaaactggaggagtcagaaagccaaaggaagactgaggaaaaagtcccagaaccc
acccccatagtgtttggtcaacagctgatgttgacagcaggttccgctccagtggctccc
cagccaggatatccaggaggctatggatacactcctccaggctaccccacccagcccccc
tacagctacaacatgtag
DBGET
integrated database retrieval system
