Oncorhynchus tshawytscha (Chinook salmon): 112262810
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Entry
112262810 CDS
T05605
Name
(RefSeq) THO complex subunit 5 homolog
KO
K13174
THO complex subunit 5
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03013
Nucleocytoplasmic transport
otw03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112262810
09122 Translation
03013 Nucleocytoplasmic transport
112262810
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
otw03019
]
112262810
03041 Spliceosome [BR:
otw03041
]
112262810
Messenger RNA biogenesis [BR:
otw03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
112262810
Spliceosome [BR:
otw03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
112262810
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
FmiP_Thoc5
Motif
Other DBs
NCBI-GeneID:
112262810
NCBI-ProteinID:
XP_024294353
LinkDB
All DBs
Position
LG12:complement(26113667..26146443)
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AA seq
683 aa
AA seq
DB search
MSDTLKKRKSKVLRSEMGTPEVKRGRGEGDQDVRVYSEEVELDGRDPEDDYQQYKLTCEA
LAQLMNDIQELKANGAKDGCAEVEQKRMQSCIHFMSLKKLNRLAHMRLKRGRDQTHEGKQ
RVDVLHLQLQNLLYEVMHLQKEISKCLEFKSKHEEIDLVSVDEFYQEAPPEVSRTPLTKD
DTHQLTLARLDWELEQRKRLAEQYKESLSSKEKIQKGIEVKKEHLSSLQPGLNAIMQASL
PVQKYLSMPFEQTQRQTEIARHLPTSLYVLLVQASAYGQACDKSLSVSISGDVDEAKALS
KPPEDSQDDDSGDSDAEEEQEKTKRRRPTTGGQLDDKRREMLKRHPLSLCLDLRCKDGSV
LHLFFYYLMNLNIMTVKAKVSTATDLTGAISAGELLNSGTLLNCLYANDQGCETPNPSNR
YQFDKVGISSFGDYVAELGHPYLWVQSLGGLKFPSDAPEGLHAGSSLSASHMESTMKLLR
GRVLSRLALHKQFSSLEHSIVPVSCECKHLFPAKVLSRLARWTTITRQEYTNLVFTQHVS
EAGLARETDLFFMAVLERGTARLQAAVVLNPRYPVISPLFAVSISWKGERSGRTDDNLRA
MESEVNVFKSELQGPRPGHQLLTNQVARLGVCLDVYLETDGQDDSVEGPREFPREKMCLR
TVRGPNRLKPFKYNHPQGFFSHR
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
atgtctgacaccctgaagaagcgcaagtcgaaggttctccgcagcgagatgggcacaccg
gaggtgaaacgtggccgtggagagggggaccaggatgtacgtgtgtatagtgaggaggtg
gagctggatggcagggacccagaggatgactaccagcaatataaactaacctgtgaagct
ctggcccaactgatgaacgatatccaggagctgaaagccaacggcgccaaagatgggtgt
gctgaggtagaacagaagaggatgcagagctgtatccactttatgagtctgaagaaactc
aaccgcctggctcacatgagactgaagagggggagagaccagacgcatgagggcaagcag
agagtagatgtgttgcacctgcagctccagaacctgctctatgaggtcatgcacctgcag
aaggagattagcaagtgtctggagttcaagtcaaagcatgaggagatagatcttgtgagt
gtagatgagttctaccaggaggccccccctgaggtatcccgcacccccctcaccaaggac
gacacccaccaactcacgctggccaggctggactgggaactggagcaaaggaagaggctg
gctgagcagtacaaggagtctctctccagtaaggagaagatccagaaaggcattgaggtg
aagaaggaacacctgagttctctacagcctggactcaacgctatcatgcaggcatccctc
ccagtccagaagtatctctccatgccatttgaacagacccagagacagacagagatcgcc
cgccaccttcccacctctctctatgtcctactggtacaggccagcgcttacggacaggcc
tgcgataagagcctgagtgtgtccatcagtggagacgtggacgaggccaaagctctgtct
aaacctccagaggactcccaggatgatgattctggggattctgatgcagaggaggaacag
gagaaaacgaagaggaggagacctactacaggtggacagctggatgataagagacgtgaa
atgctgaagagacaccctctctccctctgcctagacctcagatgcaaagacggcagtgtg
ctgcatctgttcttctactacctgatgaacctgaacatcatgactgtcaaggccaaagtc
tccaccgccacagatctcactggagccatcagcgccggggagctgttaaactctggcacg
ctgctcaactgcctgtatgccaacgaccaggggtgcgaaacgcccaacccctctaatcgc
taccagtttgataaagtggggatcagttcatttggagactacgtggcagaactgggtcat
ccctacctgtgggtgcagagtctgggaggactgaagttccccagtgacgccccagagggt
ttgcatgcaggcagttctctgagtgccagtcacatggaaagcaccatgaagctgctgaga
ggacgagtcctgtcacgcctggccctgcacaaacagttctcctcactagagcacagtatt
gttccagtgtcctgtgagtgcaagcacctgttccctgctaaggttctctctcgcctggct
cgctggactaccatcacacgccaggagtacacgaatctggtgttcacgcagcatgtgtca
gaagcaggtctggctcgggaaactgacctcttcttcatggccgtgttggagagaggaaca
gctcgtcttcaggctgcggtggtgttgaacccccgttacccagtcatttctcctctcttt
gctgtctcaatcagctggaagggggagcgcagtggacgtactgacgacaaccttcgagcc
atggagagtgaggtgaacgttttcaaatcagagctccaggggccccgcccaggccaccag
ctgctgaccaatcaggtagctcgtctgggtgtctgtctggatgtgtacctggaaactgat
ggacaggacgacagcgtggagggaccacgggagttccccagagagaagatgtgtctacgc
actgtcaggggtccgaaccgtctgaagccattcaagtacaaccacccccagggcttcttt
agtcaccgctga
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