Oncorhynchus tshawytscha (Chinook salmon): 112262827
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Entry
112262827 CDS
T05605
Name
(RefSeq) uracil-DNA glycosylase isoform X1
KO
K03648
uracil-DNA glycosylase [EC:
3.2.2.27
]
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
112262827
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
otw03400
]
112262827
Enzymes [BR:
otw01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.27 uracil-DNA glycosylase
112262827
DNA repair and recombination proteins [BR:
otw03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
112262827
Prokaryotic type
112262827
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UDG
Motif
Other DBs
NCBI-GeneID:
112262827
NCBI-ProteinID:
XP_024294379
LinkDB
All DBs
Position
LG12:complement(26507770..26514461)
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AA seq
306 aa
AA seq
DB search
MLAMNVPYLRRSPIMFLAAPLTATRVSPTLHFAQYIKVERVKKLKLSGNGTTESPSSPVC
PELLARIAKNKQAALEKLSASNTPDEFGESWRKSLVSEFGKPYFRNLMSFVDGERKLNTV
YPPPQHVFTWTQMCDIKDVKVVVLGQDPYHGPNQAHGLCFSVQRPIPPPPSLLNMYKELA
SDIEGFQHPGHGDLTGWAKQGVLLLNAVLTVRAHQANSHKDKGWETFTDAVVQWLSSNRE
GLVFMLWGAYAQKKGAAIDRKRHHVLPTVHPSPLSAHRGFFGCKHFSKTNELLEKSGKEP
IDWKAL
NT seq
921 nt
NT seq
+upstream
nt +downstream
nt
atgcttgcaatgaatgtaccatatttgagacgttctccaataatgtttttagctgcacca
ttaacagccacacgtgtttcaccaaccttgcattttgctcaatatatcaaggttgaacgg
gtgaagaagctgaagctatcaggcaacggaacgacggaatcaccttcttctccagtgtgt
ccagaactgctggcccgaatcgccaaaaacaagcaagctgcgttggagaaactttccgcc
agtaacacaccggatgaatttggggagagttggagaaagagtttggtctctgagtttgga
aagccttatttcagaaacttgatgtctttcgttgatggagagaggaaactgaacactgtc
tacccaccccctcagcatgttttcacctggacacagatgtgtgacatcaaagatgtcaag
gttgtagtcctcggtcaggacccatatcacggtccaaaccaagcccatggattatgcttc
agtgttcagagacctatcccacctccacccagcttgttgaatatgtacaaagaattggcg
tctgatatagagggcttccagcaccctggacatggagatttaactggatgggctaaacaa
ggtgtcttgctgctcaatgctgtgctgaccgtccgagctcaccaggctaactctcacaaa
gacaagggctgggaaactttcactgacgctgtggtgcagtggctcagctccaaccgggag
ggcctcgtcttcatgctgtggggggcctatgctcagaagaagggagcagctattgatagg
aaacgtcaccatgtccttcccactgtacacccctcccctttatctgctcatcgaggcttc
tttggatgcaagcacttttcaaagaccaatgagttgctggagaaatcagggaaggagccc
atagactggaaggcactttga
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