Oncorhynchus tshawytscha (Chinook salmon): 112262844
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Entry
112262844 CDS
T05605
Name
(RefSeq) collagen alpha-1(VII) chain isoform X1
KO
K16628
collagen type VII alpha
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
112262844
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
fn3
VWA
Kunitz_BPTI
VWA_2
Pur_ac_phosph_N
Ig_DSCAM-DSCAML_C
DUF4992
VWA_3
fn3_2
Motif
Other DBs
NCBI-GeneID:
112262844
NCBI-ProteinID:
XP_042153128
UniProt:
A0AAZ3SE24
LinkDB
All DBs
Position
LG02:complement(34216682..34319207)
Genome browser
AA seq
3147 aa
AA seq
DB search
MKMWCWVFPLAFLLSSVHQAEAQGRCNNVGPADIVFLIDGSSSIGRANFLQVKGFMAGIV
KPFTSSVGQSGIRFGAVQYSDTSRVEFTFTTYLNGTELVSAVENLNYKGGNTRTGAGLKF
VADNFFNPTSIRNVSKVCILITDGKSQDSVSDPAQKLRSLGVEMFAVGIKSADQTELALI
ATPPQRDYTFFVGDFKLLNTLLSLVGPRVCSSSGGVYASDDAFSGPSNLQFSSQTSDSLR
FRWTPAGGPVTGYVVQYTPLSGLGQPITAELRQETVSASQRSFVARELKSGTDYLVTVIA
QYPNSVGEPVSAKARTNSLPGVSGLRLVQAGFFSLSLTWDAPTSQFQGYRLTYGPRGQPK
AQLLEQSLAADSTSVTLERLLPDTEYVLTLYPLFPRNSASPATLTSRTLRLEAAQQLSVD
TVSERSVRVLWRGVGGARAYRLVWGPFTGRDVESVEVAGDSETHTLLNLQPDTEYIVTVI
ALYEGNTEGPGATTRFKIERLEQQVLRAATTGPSSIRLTWNLIQSARGYRLEWRQGEGGR
MQSQSFSRNTTIYDLSGLQPSTEYVITLFTLYEGREEATPVSTSPTVEQPVGRVSNLRVV
EYLGSTVRLGWTGVAGATQYRILMVNTEAQTEETRSIPGSQTTLDLRGLTEGVSYGVSVT
AVVGDSEGDPVTVYIKSEQALERVTNLRVTNTNGRRLRIAWTGVSGATGYRVTWRQGNNA
EQSRVLGPEASSYTVEGLQPDTAVVLGVAAVIGQRIGEVVTLSARTNGNNGSSTVSGLRI
IDVTSQRIRITWSPVSRATGYKITWRSGNGVESSRTVAADVTSFTIDSLQEDSSYRVSVS
SLIGSREGYPTSLNTRTESDQLVVGTVTSLKAQESRGEVVRVTWVGVQGATAYRVAWKRI
DGGEERSQLVGGDLTAVDLEQLDPGAQYEVQVMALVQNREGSPVSVRVTTPGEPVAVDRV
EGVRVLEATPRVLRLVWRGMAGVTGYRIYWRSALGEAESSRLIGRDATSFDLDGLRPGVS
YTMRLAAIFRDRESQAVTITASTAPLQPVTGLRVAEVTQNSVLLGWVPLTGATGYILRWK
EERDTGPGQSTTLPGSSSSYRVTGLRLGLRYRFTLQPNFQREVGPETSVDERTVCVGGRL
DVVFLVPASRDRASLADSLLSLLTSAAGSLTTIGERDSQLGIVVYSARPKVWFLLNRHSN
SETLLQEILSTPFEDGPGNAIGQAMTFTRQFLLSPTAGRRPRVPGAVVIIADEKSSDNIT
VPASVVKASGVTVLAVGIGRADSEELRQAVTDGSTQNLLYARDATQLGTLHADLADLLCG
VARIPEGVGPVTEQCTVQCPRGDRGERGGKGESGRDGADGRKGEPGRDGLPGREGPRGPE
GRQGQPGRSEDPSVGVRGEKGERGFPGLDGNPGLPGRPGSPGPGGVPGSQGLPGVRGDPG
DPGVTGTPGTKGDRGDRGEPGSAVSGGGLPGRKGEPGIPGIPGTLGRPGNDGAKGFVGPA
GTPGQDGRPGIPGTPGLSIKGDKGSTGERGPPGVGSGLAVKGEKGSPGSNGNPGAQGLRG
STGQQGAKGDKGESAEGLPGLAGKAGEPGDRGPRGPAGSIGLKGDRGQPGEPGSQGDRGE
RGLAGLAAERGESGQPGSTGAPGLRGFPGTSGLPGEKGSEGAKGEPGRSGPGLGGKKGEQ
GEPGLPGPEGPRGQKGDPAQKGEKGSPGTGSPGQAGSKGEQGDRGLSGLAGRLGIKGDSG
EPGERGETGRAGPAGKNGIPGKEGAKGDKGDEGTPGESGLPGKAGERGLRGLAGQPGRAG
EKGDLGDPGEHGRNGSPGPIGPRGEKGVEGAQGRPGPPGKVGDTEQKLKGERGEKGDAGD
PGEHGGKGQKGEAGSSGAAGLRGLEGQRGPPGSRGDTGERGGPGEKGERGASGLDGRNGL
DGKPGAPGAAGLRGDPGKLGDPGRDGLPGLRGVQGLPGPIGPAGNPGTPGKAGEDGKPGA
AGKMGEDGVPGEDGRKGDKGEAGVSGRDGRDGLKGDRGLGGPAGPTGLSGPQGVPGTIGP
PGQVVYAKGAPTPSIPGPQGPPGSPGVPGIPGTAGARGERGAVGSKGERGDPGEDGQPGK
PGTAVDVQKALSNLGIEMQDLKVLVDNRNVPGKSVLEKAEKGQRGDKGEAGQRGPAGIDG
ARGLSGERGVKGEQGERGPVGATGPTGRAIGEKGPVGPTGQAGEPGKPGIPGVPGRAGEL
GEAGRPGDKGERGEKGDKGEAGKNGLGGSVGPPGPKGAAAVAGESGLPGARGLPGVTGPK
GEPGASGPQGSKGDRGIAGLRGDKGDRGPSGEQGRDGFQGTAGEPGKPGQDGKPQGPQGP
AGPQGRSGNPGEPGIRGPTGPIGTNGPPGPSGVKGNQGVPGVGVQGLPGPEGNMGVRGPA
GPPGAVGPSGPPGLPGQTGEGGKPGVPGRDGIPGKEGTPGLPGKQGIAGPMGSAGLKGEQ
GDSGPPGKAVAGPPGMKGAQGPPGVTLPGTVGESGLPGLRGERGDKGPAGIKGDRGAAGE
NGEPGEDGGRGPAGPKGDRGERGIGLAGPPGQLGPQGLNGDTGLPGPAGPPGAQGVAGTP
GLAGLRGENGTPGPPGPLGPRGIQGFTGQTGTPGAPGPPGPPGLAGSPGTAGGKGDKGAI
GAGVPGLRGERGDPGPRGEEGRGGQNGERGLAGSPGGKGGRGDKGELGLQGGKGEKGDTL
LVGGPTGEKGNKGETGDRGPKGVQGEKGLKGNDGPAGEQGLRGEPGDRGSTGFQGARGPG
GQKGEAGQPGVPGESGTPGKDGMPGFRGDKGDVGITGMRGIKGDRGSKGACGSDGPKGEK
GDSGIHGRSGLPGRKGEQGDLGPPGAIGTPGKEGLIGPKGDRGIDGVLGPKGTQGEKGER
GPSGIPGPTGPTGVDGASGLTGPQGPAGAKGPEGLQGQKGERGPIGPAKIGPRGIPGIPG
ERGGQGELGLDGAKGDRGEPGLTEDEIRAYVRTEMSQHCACGGIVVTETLPSPRVRPAPE
QQLARKGKQGKDGRELRVVVNTNDPDYEHFYSIESYDDPMAMEQSIHLTPTANQSHGERV
TVDPLKTKRPRREVKGEAPVDPCVLPLEEGNCGRFTLRWYFNSQVQACRPFIYSGCEGNA
NRFLQQETCEERCLGEDTGAIPLKKGR
NT seq
9444 nt
NT seq
+upstream
nt +downstream
nt
atgaagatgtggtgctgggttttccccctggcgttcctgctgtcctcagtgcaccaggct
gaagcccaaggcaggtgtaataatgttggaccagcagacatagtgttcctgatagatggc
tcgtccagtatcggcagggccaacttcctgcaggtcaagggcttcatggccggtatcgtc
aagcccttcaccagctccgtgggccaatcagggatccgcttcggcgctgtgcagtacagc
gacacctcaagagtggagttcaccttcaccacatacctgaatggcacagagctggtcagc
gctgtggagaacctcaactataagggaggcaacactcgcaccggtgctggcctcaaattt
gtcgctgacaacttcttcaaccccacttccatccggaacgtctcaaaggtctgtatactg
atcacagatgggaagtctcaagacagtgtaagcgacccagctcagaagctacggagtctg
ggagtggagatgtttgcagtgggtataaagagtgcagaccagactgagttggctctgata
gccactcctcctcagagagactacacattctttgtgggggactttaagttgcttaacaca
ctgctctccctggtgggcccgcgtgtttgttccagctctggtggagtgtacgctagcgat
gatgccttctccggtccctctaacctccagttctcaagccagacctctgattcgctcagg
ttccggtggactcccgcaggggggcctgtgactggctatgtggtgcagtacacgcccctc
tctggccttggccagccaatcacagcggagctgcgtcaggagacggtgtctgcaagtcag
aggagcttcgtggctagagagctgaagtcaggtacagactacctggtgacggtcatcgcc
cagtatcccaacagtgtgggagagcctgtgtccgccaaggcaagaaccaactcgctaccg
ggggtgtccggtcttcgtctggtccaggctggtttcttctccctctcgctgacctgggac
gctcccacctcacagttccagggctaccgactcacctatggtccccgaggtcagcccaag
gcccaactattggagcagtctctggctgcagactctacttctgtcaccctggagaggcta
ctgcccgacacagagtacgtcctcaccctctacccgctgttcccccgaaactctgcctcc
cccgctaccctcacctcacggacattgcgtctagaagcggcccagcagctgtcagtggat
actgtgtcagagcgtagtgtccgggtgttgtggagaggagtgggtggagccagggcctac
agactggtctggggaccattcaccggtcgtgatgtggaatctgtggaggtggctggtgac
agtgagactcacaccctgttgaacctgcagccagacactgagtacattgtcactgtcatc
gctctctacgaaggcaacacagagggtcctggtgctaccaccaggttcaagatagagcgt
ctggagcagcaggtgctgagggcagccaccaccgggccctcctccatccgcctcacctgg
aacctcatccagtctgccaggggataccgcctggagtggaggcagggggaaggtggcaga
atgcagagtcagtcattctccaggaacaccactatttatgatctgtcagggctgcagccc
agcactgagtatgtcatcaccttgttcaccctgtatgagggacgagaagaggccaccccc
gtctccacctctcccacagtggaacagccggtggggagggtgtccaacctgcgagtggta
gagtacctgggcagcactgtgcgactgggatggacaggggtagccggggcaacgcagtac
cgtatcctcatggtcaacactgaagcgcaaacagaggaaacccgcagtatccctggaagc
cagacgacccttgaccttaggggtctgacagagggcgtgtcttatggggtcagcgtgaca
gctgtggtgggagacagcgagggggacccagtcactgtctacatcaaatcagaacaagca
ttggagagagtgacaaacctgcgtgtgacaaacaccaatggtcggcgactccgaatcgcc
tggacaggggtttccggggcaacagggtacagggtcacttggagacaaggcaacaatgcg
gagcagtcccgtgttctggggccagaggcctcgtcctacacggtggaggggttgcagcca
gacacagctgtggtcctgggcgtggcggctgtgattggtcaacgtatcggggaggtggtc
accctctcggccaggaccaatggcaacaacggctcaagcacggttagcggcctgcgtatc
attgatgtcacctctcagaggatacgcatcacatggtcaccagtctccagggcaactggc
tacaagattacctggcgcagtggaaatggagtggagtcctcccgcacggtggccgctgat
gtcacttccttcaccatcgacagccttcaggaagactcctcctaccgtgtctcagtctcc
tcactgattgggtctcgggaaggataccccacctccctgaacaccagaacagagtcagac
cagttggtggtgggaacagtgacttcactcaaagcccaagagtcccgcggtgaggtcgtc
agagtaacatgggtgggcgtgcagggagcgacagcctatcgtgtggcttggaagcgaatt
gacggtggggaggagaggagccagctggtaggtggtgacctcacagcggtggacctggag
cagctggacccaggggctcagtatgaggtgcaggtcatggccctggttcagaacagagag
ggatccccagtctctgtcagagtcacgacacctggggaacctgttgctgtggaccgtgtg
gagggggtcagggtgctggaggctaccccaagggtgctgcgtctggtctggagaggaatg
gctggggtcacagggtaccgcatctactggagatcagccctgggtgaggctgaatcgagc
cgtctgataggtcgagatgcgacctcgtttgacctggatggtctgcggcctggggtgagc
tacacaatgaggctggctgccatcttcagggacagagagagtcaagctgtcactatcaca
gcctccacagctcccctacagcctgtaacaggtctgcgtgtggcagaggttacccaaaat
tctgtgttgttaggctgggttccactgactggtgccacaggatatatcctgcgctggaaa
gaggagagagatactggtccgggtcaatccaccacgctgcctgggtcatccagctcctac
agggtgacagggctacgtctgggcctgagataccgcttcaccctgcagcccaacttccag
agggaggtgggccctgagacctcagtggacgaacgcactgtgtgtgtgggtggtcgtctc
gacgtggtattcctggttccagcttccagggaccgggccagcctggctgattctctgctc
tccctcctgaccagcgctgctggctccctcaccaccattggagaacgggactcacagcta
gggattgtagtgtacagcgcccgacccaaggtctggttcctgctaaatcgccatagcaac
agtgagacgctgcttcaggagatcctgtccacgccttttgaggatggcccagggaatgct
ataggccaggcaatgacgttcaccagacagttccttctcagccccacagctggtcgtaga
cccagagtccctggtgcggtggtgatcattgcagatgaaaaatcctccgacaacatcact
gtcccagccagtgttgtcaaagcctcaggagtgacggtgctggcggtgggtataggtagg
gcggactctgaggagctgcgccaggcagtgacagatggcagcacccagaaccttctatat
gcccgtgatgccacccaactgggcaccctgcacgccgacctggctgacctgctgtgtggc
gtcgccaggataccagagggagtggggccagtgacagagcagtgtaccgtacagtgtcct
cggggtgaccggggggagcgaggaggaaagggagagagtggaagagacggtgctgacgga
cgcaaaggagagcctggtcgtgatggtttgcctggcagggagggccccagagggcctgag
gggcgacagggtcagcctggccgaagtgaggacccctcagtgggggtcagaggggagaag
ggggagaggggttttcctggtctggatgggaatccagggttgccagggcgaccagggtcc
ccaggccctggaggtgtgccgggttcacaggggctaccgggtgtcagaggagatcctggt
gatcctggggttacaggaacaccagggacaaagggtgacaggggcgacaggggtgagcca
gggtcagctgtttcaggaggaggtctgcccgggaggaaaggggaaccagggatcccagga
ataccaggtaccctagggcgtccagggaatgacggggccaagggctttgtgggacctgca
gggacccctggacaggatggtcgcccagggataccaggcacccccggcctctccattaag
ggagacaagggcagcaccggagagaggggacctccaggagtgggcagtggcttggctgtg
aagggggagaagggatcaccggggtctaatggaaacccaggagctcagggtctcagagga
tctacaggacaacaaggagccaaaggagacaagggggagagtgcagaggggttgccagga
ctggctgggaaggcgggagagcctggtgatcggggtccccgtgggcctgctgggagcatt
ggactcaagggggaccggggccagccaggtgagcctggatcacaaggtgacaggggagag
agaggacttgctggcttggcagcggagaggggggagagtggacagccaggctctacaggg
gctccaggcctgaggggtttccctggcaccagtggattaccaggagagaagggcagtgag
ggcgctaaaggagaacctggccggagtgggccaggattaggtgggaagaaaggtgaacag
ggtgagccgggtctgccaggtccagaggggcccaggggccagaagggcgatccagcccag
aaaggtgaaaaaggttccccaggtactggctctcctggccaggctggatctaaaggagag
cagggggatcggggactctctggcttagctggaagactggggatcaagggagattcaggt
gaaccaggagagagaggggagacaggacgagccggacccgcaggaaagaatggcatccca
gggaaagagggagccaaaggagacaagggtgacgaaggcactcctggggagtctggactc
ccagggaaggcaggggagagaggactaaggggccttgcgggtcagcctggacgagcagga
gagaagggagacctgggagaccctggagagcatggacgtaatggcagcccaggacctatc
ggaccaagaggagagaaaggagttgagggagctcaaggccgcccaggacctccagggaag
gtgggcgatacagagcaaaagcttaaaggagaaagaggagaaaagggagatgctggtgac
ccgggagagcatgggggcaaaggtcagaagggcgaggcagggtcctcaggggctgcgggg
ctccggggtctcgagggacagcgtggacctccagggtcgagaggtgacacaggagagaga
ggaggcccaggagagaagggagagagaggtgcgtctgggctggatggacgcaacggtctg
gatggcaaaccaggggcaccaggagcggccggcctgaggggagacccagggaaactaggg
gatccaggaagagatgggctgccaggactaagaggtgtacagggcctcccaggacctatt
gggcccgctggaaatccaggcacacctggcaaagcaggagaagatggaaaaccaggggct
gctgggaaaatgggtgaggatggcgtaccaggggaagatggcagaaagggtgacaaagga
gaggctggggtttctggaagagacggccgtgatgggctgaagggggaccggggccttggc
gggcctgcagggccaactggtctatctgggccccaaggggtccctggcaccatcggacct
ccaggacaggtggtctatgcgaagggagctccaacaccatctatccctggccctcaggga
cctccaggaagcccaggtgtgcctggaatcccagggaccgcaggagctagaggggagaga
ggagcagtgggcagtaaaggtgaaaggggtgacccaggagaggacgggcaaccgggcaag
cctggaacagcagtggatgtgcagaaggccctctctaaccttggcattgagatgcaggat
ctgaaggtgcttgtggataacaggaatgtgccaggcaagagtgtgctggagaaggctgag
aagggccagagaggagacaagggagaggccgggcagagaggaccagcagggatagatggt
gcccgtgggctgtctggggagaggggtgtgaagggagagcagggggaacgggggcctgta
ggggccacaggacccacagggagggccattggagagaagggcccagtaggacccacggga
caggctggagagccaggaaaacctggaataccaggagtaccagggagagccggagaactg
ggagaggctggacgacctggagataagggggagagaggagagaagggtgacaaaggagag
gctgggaaaaacgggctaggtggctcagtgggccctcctggaccaaagggtgctgctgca
gtagcgggtgaatctggactccccggagcaaggggcctccctggggtcacagggccgaag
ggagagcctggcgcctcagggccacagggatccaaaggcgacaggggtattgcagggctc
cgtggagataaaggtgatcggggtccatctggagaacagggacgcgatggttttcagggg
acagcaggagaacctggcaaaccgggacaggatgggaagccgcagggtccacaagggcca
gctggtcctcaaggccgctcaggaaaccctggagaacctggaattagagggccaactggt
ccgatcggtaccaatggacctccaggtccgtcaggggtaaagggtaatcaaggagtgcct
ggggttggcgttcagggacttcctggtcccgaaggcaacatgggagtgcgtggacctgca
gggcctcctggagctgtgggtccatctgggcctccgggtctaccagggcagacaggggag
gggggcaagccaggggtcccaggaagagacgggatacctggaaaagagggaacaccaggg
ttgccagggaaacagggtatcgctggaccaatggggtccgcagggttgaagggggagcag
ggggacagtggccccccaggaaaggctgtagcaggaccccctggtatgaaaggagcacag
ggacctcctggtgtgaccttacctgggacagtgggagagagcgggctgccagggctacgg
ggtgagaggggagacaagggtcctgcaggcatcaaaggggaccggggagctgctggtgaa
aatggggagcctggagaagatgggggcagaggaccagcagggcctaaaggagacagggga
gagagaggcatcggactggcagggcctcctggtcagctgggacctcaagggttaaatggg
gacacaggtctcccgggcccagcaggccctccaggagcccagggcgtagcagggacccct
ggtctggccggcctgagaggagagaatggaactccaggacccccaggacctctaggaccc
aggggtatccaaggctttactggtcagacagggactcctggagctcctgggccacccgga
ccccctggcttagctggttcaccgggcactgctggaggcaaaggggataagggagcgatt
ggagcgggagtacctggattgagaggcgagagaggagacccaggacccaggggggaggag
ggtcgaggtggtcagaacggggagagaggactagcgggctctccaggtggcaaaggaggc
aggggagataagggtgaattggggctgcaaggtggcaaaggagaaaagggtgatactctc
ctggtgggaggacctacaggagagaaaggaaataaaggagagacgggtgaccgagggccc
aaaggggtgcagggggagaaaggcttgaaaggcaatgacggcccagctggggagcagggt
ctgaggggtgagccaggagacaggggctctacagggttccagggagccagaggtccagga
ggacagaagggagaggcgggacagcctggtgtacctggagaatcaggtacaccaggaaag
gatggaatgccaggctttagaggggataagggagacgttggaataactggaatgcgtgga
attaagggcgaccgaggatcaaagggggcttgtggatcagacggaccgaaaggagaaaag
ggagattcagggatccatgggaggtcagggttgcctggaaggaaaggtgaacagggagac
ttggggcctccaggggccattggaacccctggcaaggagggactgatcggacccaagggt
gaccgaggcattgatggagtactaggacccaaaggaacccagggagagaagggcgaaagg
ggcccctcgggtatccctggccctacgggccccacaggagtggacggggcctctggactg
acagggcctcaggggcccgctggagctaagggcccagaagggctccaaggacagaagggg
gagagggggcctattggtcctgccaagattggtccacgtggtatcccaggtataccagga
gaaagaggcgggcagggggagttgggtctagatggagccaagggagacagaggagagcca
ggcttgacggaagatgagattcgtgcatacgtccgcacagaaatgagccaacactgtgct
tgtggaggtattgttgtgacagaaaccctgcccagccccagggtacgtcctgctccagag
caacagctggcccggaagggcaagcagggcaaggacgggcgtgagctgcgtgtagtggtg
aacaccaacgaccccgactacgaacacttctactctatagagagctacgacgaccccatg
gccatggagcagagcatccacctgactcccactgccaatcagagccatggtgagagagtc
actgttgaccctctgaaaacaaagaggcccaggagagaggtcaaaggggaagctccagtg
gatccttgtgtgttgcccctggaggagggcaactgtgggagatttactctgcgctggtac
tttaacagccaggtccaggcctgccgacccttcatctacagcggctgtgagggcaatgcc
aaccggttcctccagcaggagacctgtgaggagcgctgcctcggggaggacacaggtgca
attcctttgaagaaggggcgatga
DBGET
integrated database retrieval system
