Oncorhynchus tshawytscha (Chinook salmon): 112262876
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Entry
112262876 CDS
T05605
Symbol
clip1a
Name
(RefSeq) CAP-Gly domain-containing linker protein 1 isoform X1
KO
K10421
CAP-Gly domain-containing linker protein 1
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04150
mTOR signaling pathway
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09130 Environmental Information Processing
09132 Signal transduction
04150 mTOR signaling pathway
112262876 (clip1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
otw03036
]
112262876 (clip1a)
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
otw04812
]
112262876 (clip1a)
Chromosome and associated proteins [BR:
otw03036
]
Eukaryotic type
Centrosome formation proteins
Microtubules and associated factors
Microtubule-associated proteins
112262876 (clip1a)
Cytoskeleton proteins [BR:
otw04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Cytoplasmic linker proteins (CLIPs)
112262876 (clip1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAP_GLY
CLIP1_ZNF
Filament
KASH_CCD
FAZ1_C
Motif
Other DBs
NCBI-GeneID:
112262876
NCBI-ProteinID:
XP_024294460
LinkDB
All DBs
Position
LG12:28445693..28506176
Genome browser
AA seq
2270 aa
AA seq
DB search
MSTTKPSGLKAPSKMGRSTGAPATKTTPSAAGSKVAAADKSTPGGGAAGTQDSGENFQVG
ERVWVNGNKPGVVQFLGEAQFAPGQWAGIVLDEPIGKNDGSVAGVCYFQCEALKGIFTRP
SKLSYTEGEANGTQTAPSSRAGSPTPSTASLASHTPSVKKASTAMPATPTIPASNLARTN
SESISNLSDTSSVKKGERELKNGDRVLVGGTKAGVVRFLGETDFAKGEWCGVELDEPLGK
NDGAVAGTRYFQCQPKYGLFAPVHKVTRIGFPSTTPAKAKTMVRKLVATPSGLKRSPSAS
SISSMSSVASSVSAKPSRTGLLTETSSRYSRKISGTTAVQEVLKEKQQHIEQLMAERDME
RAEVAKATTHVGEVEQELTLLREDQEQMEAKMDQLRTLVEAADKEKVELLNQLEEEKRKV
EDLQFRVEEACITKGDLETQTKLEHAHIKELEQSLLFEKTKAEKLQRELEDTRVATVSEK
SRIMELERDLVLRTREVADLRLRLEVQQSSEGSDSTTSPLLEEVSSLRAQLASQEDQQQV
ELAGLKEMLAAEEKAHSAAVSQFQVSSTKVSTDNEQLKLRLSQNEKENADVIEQWRCKLE
SAIASHQQATEELKVSFSKGAGSQMTELVETKTALERLKLEHKQALEEAGARCEAEAAAR
ARETGELNKQLLVVSEEKECLEESLRSSVESAEEQHLVEMEDVLGKLHTAELKVNELEEH
EAKLVQQTQDRAKEVQEQVAAMEVLQSQAGQGNQALQNLRTQLEEAQSQACSQGNRVSEL
NSELEGKQQELLSLQQSLTSVLQDKVSLEQELGNLKQKLSESTDNQAKSTQTMQGLERKL
KAGEERLDQLANEKAKLQSDISDMMKSSGDSSAQLTKMNEEITQKKRSLEELQTQLAEEK
ERTACSEEQQQQEVAQKEKELKAARDEHQGQLSNLQGKITQLEKSLQQCEAQAKDLQTSQ
QKALSEASEHHAKQLQELQGQADKTKQELSVSRKKAQELERLVTELQPYKEKAQFLSGEL
DYSRQHIERLSTDLEKQISVLAHMSKESSDLKAQEGSLKNQLSELEAKLSASEASHQELS
GKTDELLTLRDKLTKEQEELWTTNRKLEGENASLSREVEKLRVAVEEAQANNKSLSQSEA
ERQSQIEELQKTNAEKHEVLLKYQQEILQQEIKRKQLAEVYEKTCEERNELQQSREKLTS
EKDILLLERDAARNAKKSLDAKNLELQARCQSLSLEKEDFCLKNTQLQAQTETLGKDKVE
MFTQINAAIFDKEALQALNAELQNQLNITKKDLEKSVRDKVELHASKTSLAKMLDQSKTS
SEVTDSERLHLLQEKEDLLATQRKVCSEKDELIKEREELKEKLRLSTEEVATSKEKVKEL
LSSFGEEKEALCLQNAETEKALHSIRKEKMAIELTLEKQNMESDCWVHEKEELEEKHTQE
ISEKCTLTKERDKLAGEICSMKDQLDSSTKANDDLKQANSNLTSLLEELKQKIEKVEAEG
ASLKKEKVDLQAQLQKLCSEREALEKSKTELAEEHHELKGNSEQMRLELIQQNDTQTKKQ
DLLLSQQTELNKSLQKDKEDLLLQVQEFKGQTESLSKAKMLLELQQQTEASDRSKLSSAK
DDLSREREDLQTQLFTLTQEKITILQSESSLKAEVASVCVERDSIASERNSLRSDLGQLK
TTHTGLLGERQGLLEVNVQLQVKVQDLTQQSVTREKAMDELSANLKDIGVERKALAGEVE
NLKAQLKERDQEKGDLAGDQICLSAKLEKLVNEVSSLAKEKVDLLAIQSRLEQDLSSLHS
SQESRDGEHSRLMGEVEKLQVTQTQLEADAQALRAEKSVMEGQHKASVEEASVSTKVREE
MATNLEDLKVQKDALLKERDKATQQVTQLEAQLKNAISKQLEAAESSGKTAEVVELLTQE
KGLLQQEKIEAQSLLEEFRSAKQEMTNQLDSLKQQNSKYKKELNLSKEQLSSENQKISSL
CQEIDKLKQATSVKSQSLVALQEENNKLTKELGSSKKETSGQQKLEAQQSKLNKQLQEMK
QRETTMKKKLDEEKAFLQKSIHKNSALISEKDQELETLMSELSVLRGESAIAKTLKFTIQ
LLEKDKAQLQEHIQSLEKSLSGGQDTVTSSSGDAALDQLRENKETAESQAAIEFLNSVIV
DLQKKNEELKGKLEKMAEAALNGNNASELDNYDSSFNKGPSKKKVPPRLFCDICDCFDLH
DTEDCPTQMQMPDSPPHTTYHGSKDEERAYCDICEAFGHCTESCNDDQTF
NT seq
6813 nt
NT seq
+upstream
nt +downstream
nt
atgagcacaaccaagcccagcggactcaaagcgcccagcaagatgggtaggtcaacgggg
gcgccagccaccaagaccaccccctccgctgccggatccaaagtagctgcagccgacaag
tccactccaggaggcggtgcagctgggacacaagatagcggggagaactttcaggttggg
gagcgagtgtgggtgaatgggaacaaacctggcgtggtgcagttcctgggggaggctcag
tttgcaccaggacagtgggctggcatagtgttggatgagcccattgggaagaacgatggc
tcggtggcaggggtgtgctatttccagtgcgaggccctgaaagggatattcacccgcccc
tccaagctgtcctacacagagggcgaggccaatgggactcagacagcaccttcgtcccgg
gctgggtcgcccaccccctccaccgccagcctggcctctcacaccccctctgtcaaaaaa
gcctcaactgcaatgcctgccacgccaaccattccagcctccaacctggcacgcacaaac
agcgagtccatctccaacctctcagacaccagctcggtcaagaaaggggagagggagctg
aagaatggagaccgcgttttggttggtggcacaaaagctggtgtggttcgctttcttggt
gaaacagactttgccaagggagagtggtgtggtgtggaactggatgagcccctgggaaag
aacgatggggcagtggcaggaaccagatactttcaatgccaacccaagtatggcctgttt
gccccagtccacaaggtcacgcgtattggcttcccctccaccacgccggccaaggcaaag
accatggtgcggaagttggtggccacgccctcgggcctgaagcgcagccccagcgcctcc
tccatcagctccatgagctctgtggcctcctccgtcagtgccaagcccagccgcacaggc
ctgctgacagaaacgtcatcacggtactcgagaaagatctctggcaccacagcagttcag
gaggtgctgaaggagaagcagcagcacatcgagcagctgatggcggagcgtgacatggag
agggcagaggtggccaaggcaaccacccatgtgggcgaggtggagcaggaactgaccctg
ctgagagaggaccaggagcagatggaggccaagatggaccaattacgcaccctggtggag
gctgctgacaaggagaaggttgagctgctcaatcagctggaggaggagaagaggaaagtg
gaggacctccagttccgcgtggaggaagcttgcattaccaaaggagacctggagacgcag
accaaactggagcatgcccacattaaggagcttgaacagagcctgctctttgaaaagacc
aaagctgagaaactccagagagagttagaagacactagggtggccacggtgtcagagaag
tcccgcatcatggaactggagagggacttggtgctgaggaccagggaggtggctgacctg
cggctgcgtctggaggtccagcaaagctcagagggctcagactccaccacctcccctctc
ctggaagaggtgagctctctgagggctcagctggcctctcaagaagaccagcaacaggtt
gagctggctgggctgaaggagatgctggcagcggaggagaaggcccacagtgcggcagtg
tctcagttccaagtctcatccaccaaggtctccacagacaacgagcagttgaagctgcgc
ctcagtcagaacgagaaggagaatgcagacgttatagagcagtggcgctgcaagctggaa
tctgccatcgcttcacaccagcaggccacggaggagctgaaggtgtccttcagtaaaggg
gccggttcccagatgacagagctggtggagaccaagactgccctggagaggctgaagctg
gagcacaagcaggcactggaggaggcgggagccaggtgtgaggcagaggctgcagcccgg
gcacgggagacaggggagctcaacaaacagctgctggtcgtgtcggaggagaaggagtgc
ctggaggagagcctgcggtccagtgtggagagtgctgaggagcagcacctggtggagatg
gaggacgtgctgggcaaactgcacactgctgagctgaaggtaaacgagctggaggagcat
gaagctaagcttgtccagcagacccaggaccgtgccaaggaggtccaggagcaggtggca
gctatggaggtcctgcagtcccaggcaggccaaggtaaccaagctctccagaacctgagg
acccagctggaggaggcccagagccaagcttgctcacagggcaacagggtcagtgagttg
aactctgagctggagggtaagcagcaggagctcctctccttgcagcagagcctgacctct
gtgctgcaagacaaggtctccttggagcaagagctgggcaacctgaaacaaaaactgtca
gaaagcacagacaatcaggctaagtcaacacaaactatgcaagggctggagaggaagcta
aaggctggagaggagaggcttgatcagctcgcaaacgaaaaggccaagctccaaagtgac
atctcagacatgatgaagtcatcaggcgacagttcagcacagcttaccaaaatgaatgaa
gaaatcactcagaaaaaaaggagtctggaagagttacagacccaactcgcagaggagaag
gagcggactgcatgttctgaggagcaacaacagcaggaagttgcccagaaggagaaggag
ctgaaggctgccagagatgagcatcagggccagctaagcaacctgcaggggaaaatcaca
caactggagaagagtttgcagcagtgtgaggcccaggccaaggatcttcagacctcccag
cagaaggccctgtctgaggcctcagagcaccatgccaagcagctccaggagctgcagggt
caggctgacaagaccaagcaggagctgagtgtctccaggaagaaggcccaggagctggag
aggctggtgactgagctgcagccttacaaagagaaggctcagtttctttctggtgagctc
gactactccaggcagcatattgagagattgtccacagacctggagaagcaaatctcagtg
ctggcgcacatgtctaaggaaagctcagatctcaaagctcaggaaggaagtctcaaaaat
caactctctgaactcgaggccaagctctcagcctcggaggctagtcaccaggagctctca
ggtaagactgatgaacttctgacactgagggacaagctcacaaaagagcaggaggaactt
tggaccaccaaccggaagctagaaggagagaatgcctcactatccagagaggtggagaag
cttagagttgctgttgaggaggcacaggccaataacaaatccctcagtcaatctgaagcg
gagcgtcagtcccaaattgaggagcttcaaaagacaaatgcagagaagcatgaggtcctt
ttgaagtaccaacaggagatcctgcagcaggaaattaagaggaagcagctagcagaggtc
tatgagaagacctgtgaggagaggaacgagctccagcaaagcagggagaagctgacctct
gagaaggatatccttttgttggagagggatgcagccagaaatgctaagaaatcccttgat
gcaaagaatttggagttgcaggcaaggtgtcagtctttaagcttggaaaaagaagacttc
tgtctgaaaaacactcagctgcaggcacagacagagaccttgggcaaagataaagtggag
atgtttactcaaattaacgctgccatttttgacaaagaggccctccaagccttgaatgca
gagcttcaaaatcagctgaatatcactaagaaggatcttgagaagtctgtccgtgacaag
gttgagctacatgcttcaaaaacgagcctggccaaaatgctggaccagtccaagaccagc
agtgaggttaccgactcagagaggcttcacctcctgcaggagaaagaggacctgcttgct
acccagcgaaaggtgtgttctgagaaagatgaacttatcaaggagagagaagagttaaag
gagaagctcagactttctacagaggaagtggcaacctctaaggagaaagttaaagagctg
ttgtcatcttttggcgaggagaaggaagcactttgtctccagaatgcagagactgagaag
gcgctacactctatacgcaaagagaagatggctatagaattaacactggaaaagcagaac
atggagagtgactgttgggtacatgaaaaggaagagctggaagaaaagcacacacaggag
atctctgaaaagtgtactctaacaaaagagcgtgacaagctagcaggtgagatctgcagt
atgaaggaccagttggacagctccactaaggccaatgatgacctgaagcaagccaattcc
aacctcacgtccttgctggaggaattaaaacagaagatagaaaaggtggaggctgaggga
gcttccttgaaaaaagaaaaggttgatctacaggcgcagcttcagaagctttgctcagag
cgggaggcccttgaaaaaagcaaaactgaacttgcagaggagcatcatgaactaaaaggc
aactctgagcagatgcgtttggaactcattcagcagaacgatacccaaacaaaaaagcag
gatctcctgctttcgcagcagactgagcttaacaagagcctgcagaaggacaaagaggat
ctgcttctgcaggtccaggagttcaaaggtcaaacagaatcactttcaaaggcaaaaatg
cttcttgaattgcagcagcagactgaagcaagtgaccgaagtaaactgtcctctgccaag
gatgacctctccagagagagagaggacttacagacacagttgttcactctgacacaggag
aagattactatcctgcagtctgaatccagcctgaaggcagaggttgcctctgtttgtgtt
gaaagagactcaatagcctctgagagaaatagtttgcgtagtgatttagggcaacttaag
acaacccacactggattgttaggtgagagacagggtctgcttgaggtcaatgtccagctg
caagtcaaagtgcaggacctcactcaacaatctgtcaccagagagaaggccatggatgag
ttgtctgccaaccttaaggatattggagtggagagaaaagccttggctggggaggttgag
aacttaaaggcacagctgaaggagagggaccaggaaaagggtgacttggctggagaccaa
atatgcctgtctgccaagctggagaagcttgtcaatgaggtctcctccctggctaaggag
aaggtagacctcctagctatacagtcccgcctggagcaagacctttcctccctccacagc
agccaagagagtagggatggggaacactcaaggctcatgggggaggtagagaagctgcaa
gttacccagacacagcttgaagcagatgcccaggccctacgtgctgagaagtcagtgatg
gagggacagcacaaagcctctgtggaggaggcatctgtgtctaccaaggtcagagaagaa
atggccaccaacctggaagacctgaaggtccagaaggatgccttgctcaaggagagggac
aaagccacccagcaggtcacccagcttgaggctcaactaaaaaatgctatttccaagcag
cttgaggcagcggagtcctcagggaagactgctgaggtcgtggagttgctgacacaagag
aagggccttctgcagcaggagaagattgaggcccagtctctgctggaggagttcaggagt
gccaagcaggagatgaccaatcagctggattccttgaagcaacagaattccaaatacaaa
aaggagctcaacctttctaaagagcaactcagctcagagaaccagaaaatcagcagcctg
tgccaggagattgataagctgaagcaagctacctctgtgaagtcccagtccctggtggcc
ttacaggaggagaacaacaagctgaccaaggagcttggcagcagcaagaaggagaccagt
ggccagcagaagctggaagctcagcagtccaagctcaataaacagttgcaagaaatgaag
cagagagagaccacaatgaagaaaaagttagatgaagagaaagccttcctccagaaatcc
atccataaaaacagcgccttaatctctgagaaggatcaggagctggagaccctgatgagt
gagttatcagtgctgcgtggggagagcgccatagcgaagacactgaagtttactatccag
ttactggagaaggacaaggcacagctgcaggagcatattcagagcctggagaagagcctt
tcaggaggacaggatactgttaccagctcctcaggtgacgcagctctggatcaactaagg
gagaacaaggagactgcagaaagccaggcagcgattgagttcctgaactcggttatcgtg
gacctgcagaagaagaatgaggaacttaagggcaagctggagaagatggcagaggctgcc
ctcaatgggaataatgcaagcgagcttgacaactatgacagcagttttaacaaaggcccc
tccaaaaagaaggtcccaccaaggctcttctgtgacatttgtgactgcttcgacctccat
gatacagaagactgtcccactcagatgcagatgccggactccccaccccacaccacctac
cacggcagtaaggatgaggagagggcttattgtgacatctgtgaggcctttggccactgc
actgagtcctgtaacgatgaccagaccttctaa
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integrated database retrieval system
