Oncorhynchus tshawytscha (Chinook salmon): 112262884
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Entry
112262884 CDS
T05605
Name
(RefSeq) rab5 GDP/GTP exchange factor isoform X1
KO
K20131
Rab5 GDP/GTP exchange factor
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04137
Mitophagy - animal
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
112262884
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112262884
Membrane trafficking [BR:
otw04131
]
Endocytosis
Rab GTPases and associated proteins
Rab associated proteins
112262884
Protein recycling
Other Rab GTPase associated proteins
112262884
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VPS9
zf-A20
DUF5601
YtxH
Motif
Other DBs
NCBI-GeneID:
112262884
NCBI-ProteinID:
XP_024294478
LinkDB
All DBs
Position
LG12:complement(28619181..28624005)
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AA seq
474 aa
AA seq
DB search
MAAEQQRGIRVTQAELLCKDACGYYGNPAWQGFCSKCWRERTRKAEADRQETGPHNDAGS
PLTFSKFEEKKNMEKGRKVNTMRRLFWGGPSPPKRPESSEGQVATLKAYQSIERGDFTSF
LKLLRNPSSQRLQSRCTAFLNTMEAYHGLPVQKQSDLVQDFYQNIAVHFSSLSEIQVSQM
MEHMEKLIMTRLHKWVFCHDSCDDEVKDLALQRRIRSLNWVTPHMLRVPFPDERAEVVSD
PFLPAITAIIEMDAKRAPQDKLTCVCKCSQNVFQALSTSNSEPANADDYLSGLIYVVLKA
NPPRLHSNMQYVIRFGLPHSLMAGESGYYFTNLCCAVAFIEKLDGPALNLSPVEFEGYMQ
GRRAPSKRGSERQKMARETKDQLEDLKGRQEKVDQGINALKEQLQHWVQSVKAQIDEVTS
QSALTQEEIKAQSEFLQSHSVSTLTQADEVKDQSVLLLDGQESNNNTCLTEAEC
NT seq
1425 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggagcagcaaagagggatccgagtcactcaagcagagcttctctgcaaggat
gcgtgtggttattatggcaaccctgcatggcagggcttttgctccaagtgctggcgagaa
cgaacccgtaaagcagaggcggacaggcaggagactgggccccacaatgatgcaggttct
cccctcaccttttctaaatttgaggagaagaagaatatggagaagggtcgcaaagtgaat
acgatgaggaggctcttctggggtggaccgtcccctcctaaacgcccagagtcttcagag
ggccaggtggctacattaaaagcctatcagagcattgagcgaggggattttaccagcttc
ctgaagctgctgaggaacccatcctctcaacgtctgcagtcccgttgcactgctttcctc
aacaccatggaggcttatcacggcctgccagtgcagaagcaatctgaccttgttcaagac
ttttaccagaacatcgctgtgcatttcagtagtctttcagagattcaggtctctcagatg
atggagcacatggagaagctgatcatgacgcgtctgcacaagtgggtgttctgccatgac
agctgtgacgatgaagtgaaagacttggcactccagaggaggatacggtccttaaactgg
gtcaccccccacatgctgagggtgcctttccctgacgagagggctgaggttgtcagtgat
ccctttctgcctgctataacagccataatcgagatggatgccaagcgcgcgccacaggac
aagcttacatgcgtatgtaagtgcagtcagaatgtcttccaggctctctccacttccaat
agtgagccagcaaatgctgacgactacctgtctggcctgatttacgtagtactaaaggcc
aacccaccccggcttcactccaacatgcagtatgtgatccgcttcggcctccctcacagc
ctgatggcaggagagagtggctactacttcaccaatttgtgttgtgcagtggccttcatt
gagaagctggatgggccagcactcaacctaagcccagtggagtttgagggctacatgcag
ggtcgccgtgctccctcaaagaggggcagtgagaggcaaaagatggccagggagacgaaa
gaccaactagaggacctgaagggtcgacaggagaaggtggaccaaggaataaatgccctc
aaagagcagctacagcattgggtacagtctgtcaaggcacagatagatgaggtaacatcc
cagtctgctctgacacaagaagaaattaaagcccagtcagagtttttgcaaagccattct
gtctctactctaacacaggcagatgaggtcaaagaccagtcagtgttgttgctagatggt
caagagtcaaacaacaacacttgtctaacagaggcagagtgttag
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