Oncorhynchus tshawytscha (Chinook salmon): 112262888
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Entry
112262888 CDS
T05605
Name
(RefSeq) vacuolar protein sorting-associated protein 33A isoform X1
KO
K20182
vacuolar protein sorting-associated protein 33A
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04140
Autophagy - animal
otw04148
Efferocytosis
otw05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
112262888
04148 Efferocytosis
112262888
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
112262888
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112262888
Membrane trafficking [BR:
otw04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
112262888
Hops complex
112262888
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec1
Takusan
Motif
Other DBs
NCBI-GeneID:
112262888
NCBI-ProteinID:
XP_024294485
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Position
LG12:complement(28650302..28665257)
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AA seq
599 aa
AA seq
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MSAHLSYGRVNLNILREAARKELREFLDKCAGSKAIVWDEYLTGPFGLIAQYSLLKEHEV
EKMFTLKGGRLPAADVKNIIFFVRPRLELMDIIAENVISEDKMLSPRDFHILFVPRRSML
CEQRLKEQGVLGSFINIDEYILDLIPYDGDLLSMESEGAFRECYLESDQTSLYHTAKGLM
TLQALYGTIPQIFGKGECARHVANMMLRMKREFAGSQTQILPVFDSLLLLDRNIDLLTPL
ATQLTYEGLIDEVYGITNGYAKLPPEKFAAQKKQGEVGKDLPTEPKKMQLNSAEELYAEI
RDKNFNAIGAALSKKAKIISAAFEERHNAKTVGEIKQFVSQLPHMQAARSSLANHTSIAE
LIKDITTSEAFFDNLTVEQEFMTGVDTDKVNTYIEDCIAQKDPLIKILRLVCMQSVCNNG
LKQKILDYYKREILQTYGYEHMLTLNNLEKTGLLKPQTSTRNNYPTIRKTLKLWMEDANE
QNPNDISYVYSGYAPLSIRLTQVLARPGWRSIEEVLKMLPGPHFEERQQLPAGLHKKRQQ
GENRTTLVFFLGGVTYAEVAALRFLSQMEDGGTEYIIATTKLINGTSWIKSLMDRPEAP
NT seq
1800 nt
NT seq
+upstream
nt +downstream
nt
atgtctgcgcacttatcctatggaagagtaaatttaaacattttgagggaagcagcgcgg
aaggagctccgtgagtttttggacaaatgtgcaggaagcaaggctattgtgtgggatgaa
tacctgactggaccctttggattgatagcacaatattccttgctgaaggaacatgaggtg
gagaagatgttcaccctcaaaggggggcgtcttcctgctgctgatgtgaaaaatataatc
ttctttgttcgtcccagactggaactgatggatattatagctgagaatgtcatcagtgag
gataagatgctttccccacgtgacttccacatcctgtttgtgccccggcggagcatgctc
tgtgagcagcggctgaaggagcagggggtcctgggctcgttcatcaacatagacgagtac
atcctagacctcataccttatgatggagacttgctctccatggagtctgagggggccttc
agggaatgctatctagaaagtgaccagacaagtctttaccacactgccaagggccttatg
actctccaggctctgtatgggaccatcccccagatatttgggaaaggggagtgtgcacgg
catgtagctaatatgatgcttaggatgaagagggagtttgctggcagtcagactcagatc
ctgcctgtgtttgactcactgctgctgctggaccgcaacatagacctgcttacccctctg
gccacacagctcacctatgagggcctcattgacgaagtttatggaatcaccaacggttat
gcgaagttgcctcctgagaagtttgctgcccaaaagaagcagggtgaggtgggtaaagac
ctgcccacggagcccaagaagatgcaactcaactcagcggaggagctgtatgctgagata
cgggacaaaaacttcaacgccataggggctgcactgagcaagaaggccaagatcatctct
gctgcctttgaggagcggcataatgccaaaacagttggcgagataaagcagtttgtgtcc
cagctgccccacatgcaggcagcacggagctcgctggccaatcacacctccatagctgaa
ctcattaaggacatcaccacctcagaggccttctttgataacctgacagtggagcaggag
tttatgactggagttgacacagacaaggttaacacatatattgaggactgtattgcccag
aaggatcctctgatcaaaatcttgcggctggtctgtatgcagtcagtctgcaacaatggc
ctcaagcagaagatattggactactacaagagagagatcctgcagacctatggatatgaa
cacatgcttaccctcaacaacctggagaagacaggtcttctgaagccccagacaagcacc
aggaataactaccccaccatcaggaagacactcaaactttggatggaggatgccaacgaa
cagaaccccaatgacatctcctatgtgtacagtggttatgctcctctcagcatccgtctg
acccaggtgttggccaggcccggctggcgcagcatcgaggaagttctgaagatgctccct
ggtccacactttgaggagagacaacagctgcctgctggtctccataagaaacgccagcag
ggggagaacaggaccaccctggtgttctttctgggaggggtgacttacgcagaagttgct
gccctgcgcttcctgtctcagatggaggatggtggcacagagtacatcattgccactacc
aagctcatcaatggtaccagctggatcaagtctctgatggaccgcccggaggccccctga
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