Oncorhynchus tshawytscha (Chinook salmon): 112262964
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Entry
112262964 CDS
T05605
Name
(RefSeq) U5 small nuclear ribonucleoprotein 200 kDa helicase
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112262964
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
otw03041
]
112262964
Enzymes [BR:
otw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
112262964
Spliceosome [BR:
otw03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
112262964
Complex C
U5 SnRNP specific factors
112262964
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
SNRNP200_wHTH
DEAD
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_22
AAA_30
SWI2_SNF2
PhoH
DUF603
Motif
Other DBs
NCBI-GeneID:
112262964
NCBI-ProteinID:
XP_024294635
LinkDB
All DBs
Position
LG12:complement(31935297..31961380)
Genome browser
AA seq
2137 aa
AA seq
DB search
MADVTARSLQYEYKANSNLVLQADRSLIDRTRRDEPTGEVLSLVGKLVGTKMGDKSQRTK
PSMQGEKRAKRRKRDEDGHDMNKMKGFTLLSEGIDEMVGIVYKPKTKETRETYEVLLSFI
QAALGDQPRDILCGAADEVLAVLKNDKMRDKERRREVEQLLGPADDTRYHVLVNLGKKIS
DYGGDKELQNMDDNIDETYGVNVQFESDEEEGDEDQFGEVRDDGSDEESEGEEADLGCTL
TANLGVTGDVMTAKKKELHPRDIDAFWLQRQLSRFYDDAIISQKKADEVLEILKTASDDR
ECENQLVLLLGFNTFDFIKILRQHRRMIQYCTMLASAQSEAEKEKIIGKMEADPDLSKVL
YQLQETEKEDIIREERSRRERVRKSRVDNDLESMDIDHGESMAPKQLLDLEDLAFTQGSH
FMANKRCQLPDGSFRKQRKGYEEVHVPALKPKPFADDEVLVAIEKLPKYAQAGFEGFKTL
NRIQSKLFKTAMETDENLLVCAPTGAGKTNVALMAMLREIGKHINLDGTINLDDFKIIYV
APMRSLVQEMVGNFSKRLASYGITVSELTGDHQLCKEEINATQVIVCTPEKWDIITRKGG
ERTYTQLVRLIIIDEIHLLHDDRGPVLESLVARTIRNVELTQEDVRLLGLSATLPNYEDV
ATCLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQV
LVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYG
FAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRW
TELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVSKLPDML
NAEIVLGNVQNAKDAVNWLGYTYLYVRMLRNPTLYGVSHDDRSSDPLLERRRMDLIHTAA
NVLDKNSLVKYDKRTGAFQVTDLGRIASHFYITHNSIQTYNQLLKPTLSEIELFRVFSLS
SEFRNITVREEEKLELQKLLERVPIPVKESIEEPSAKINVLLQAYISQLKLEGFALMADM
VYVTQSAGRLMRAIFEIVLSRGWAQLTDKTMNLCKMIDKRMWQSMSPLRQFRKLPEEVIK
KIEKKNFPFERLYDLNHNEIGELIRMPKMGKTIHKYVHQFPKLDLAVHLQPITRSTLKVE
LTITPDFQWDDKVHGSSEAFWILVEDVDSEVILHHEYFLLKAKYAQDEHLVTFFVPVFEP
LPPQYFIRVSSDRWLSCETQLPVSFRHLILPEKYPPPTELLDLQPLPVTALRNAAFETLY
QNKFPFFNPIQTQVFNAVYNSDDNVFVGAPTGSGKTICAEFAILRMLLHNAEGRCVYITP
MEALAEQVFVDWHQTFQDALNKKVVLLTGETSTDLKLLGKGDIIVSTPDKWDILSRRWKQ
RKNVQNVSLFIVDETHLIGGENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDVA
HWLGCSTTATFNFHPNVRPVPLELHIQGFNVSHTQTRLLSMAKPVYHAIMKHSPSKPAVV
FVPSRRQTRLTAIDILTFCAADVVPQRFLHCTEKDLAPFLEKVTDGTLKETLANGVGYLH
EGLSTTERRIVEQLFNSGAVQVVVASRSLCWGTNISAHLVVIMDTQYYNGKIHAYVDYPI
YDVLQMVGKANRPLQDDEGRCVIMCQGSKKDFFKKFLYEPLPVESHLDHCMHDHFNAEIV
TKTVENKQDAVDYLTWTFLYRRMTQNPNYYNLQGMSHRHLSDHLSELVENTLHDLEQSKC
ISIEDEMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKIRGLIEIISNAAEYKNIPIR
HHEDNLLRQLAQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQLSAELQSDTEEILSKAVR
LIQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPYFTLEHIKRCTDKGVES
IFDIMEMEDEDRSGLLQLSDTQIADVARFCNRYPNIELSYEVAEKENIKSGGPVLVLVQL
EREEEVTGPVIAPLFPQKREEGWWVVIGDPKSNSLISIKRLTLQQKAKVKLDFVAPVLGI
HNYTLYFMSDAYMGCDQEYKFSVDVKEAESDGDSDSD
NT seq
6414 nt
NT seq
+upstream
nt +downstream
nt
atggcagatgttactgcgcgtagcttgcagtatgaatacaaagcgaactctaacttggtg
ttacaagcggaccgttcgctcattgaccgcacaaggcgcgatgagcccacgggagaggtg
ctgtccctggtgggaaagttggtgggaaccaagatgggtgacaagtcccagaggaccaaa
ccttcaatgcaaggagagaaacgggcaaagaggaggaagagagatgaggacgggcacgac
atgaataagatgaagggcttcaccctcctgtcagaaggcattgatgagatggtgggcatt
gtgtacaagcctaagaccaaggagactagggagacctacgaggtccttctcagcttcatc
caagctgccctgggagatcagccaagagacatcctgtgtggagcagctgacgaagtgcta
gctgtgctgaagaatgacaagatgagggacaaggagagacggcgtgaagtggagcagcta
ctagggcctgcagatgacacacgctaccacgtgttggtcaacctgggcaagaagatcagt
gactacgggggtgacaaggagctccagaacatggatgacaacattgacgaaacatacggg
gtgaacgtccagtttgaatctgatgaggaggagggtgatgaggaccagtttggggaggtg
cgagatgatggctcagatgaagagagtgaaggagaggaagcagacttgggctgcaccctg
acggccaaccttggtgtgacaggtgatgtgatgacagccaagaagaaggagctgcaccct
cgtgacattgatgccttctggctccagcgtcagctcagccgtttctatgacgatgccata
atctctcagaagaaagcagatgaggttctggagatcctcaagacggccagtgatgacaga
gaatgtgagaaccagctggtcttactgttgggattcaacactttcgacttcatcaaaatc
cttcggcagcatcggcggatgatccagtactgtaccatgttggcaagtgctcagagtgaa
gcagagaaggagaagattataggaaagatggaggcagatccagacttgtccaaagttctt
taccagctgcaggagactgagaaggaggatattattagggaggagcgatctcgcagggag
agagtgaggaagtctcgcgtggacaatgacttggagtctatggacatcgaccacggagag
tccatggcccctaaacaactgctggacctggaggacctggccttcacccagggaagccac
ttcatggccaacaagaggtgccagctaccagacggctccttccgcaagcagcggaaaggc
tacgaggaggtgcacgttcctgccctcaagcccaagccctttgctgatgatgaggtgctg
gtggccattgaaaagcttcccaagtatgcccaggcaggtttcgaaggattcaaaacactg
aaccgcatccagagcaagctgttcaagactgctatggagaccgatgagaacctgcttgtg
tgcgctcctacgggggcaggaaagaccaacgtggccctgatggcaatgctgagggagatc
ggcaagcacatcaacctggacggaaccatcaacttggacgacttcaagatcatctacgtt
gctcctatgcgctcgctcgtacaggagatggtgggaaactttagtaagcgtctggccagt
tacggcatcacagtgtctgagctgactggagaccaccagctgtgtaaagaggagatcaat
gccacccaggtcatcgtctgcaccccagagaaatgggacatcatcacgcgcaaaggaggc
gagcgcacctatacccagctagtgcgcctcatcatcattgatgaaatccatctgctgcat
gacgaccgcgggccagtcctagagtctctggtggccaggaccatccgcaatgtggagctg
acccaggaggacgtgcgtctgctgggtctcagtgccaccctgccaaactacgaggacgtg
gccacctgcctgcgtgtggaccccgctaagggactcttctacttcgacaacagtttccgc
ccagtgcctctggagcagacgtatgtgggcatcactgagaagaaggccatcaagcgcttc
cagatcatgaatgagatcgtctatgagaagatcatggagcatgctgggaagaaccaggtg
ctggtgtttgtccactccaggaaggagactgggaagacggcccgggccatcagggacatg
tgtctggagaaggacactctggggctgttcctgagggagggctcagcctccaccgaggtc
ctcaggactgaggcagagcagtgtaagaaccttgagcttaaggacttgctgccttacggt
tttgccatccatcatgctggtatgaccagagtggaccgtaccttggtagaagatctcttt
gctgatcgccacatccaggtgctggtgtccacagccacattggcctggggtgtgaatctg
cctgctcatactgtcatcatcaaaggcacccaggtgtacagcccagagaaaggccgatgg
acagagctgggagccctggacattctacagatgcttggtcgagctgggcgtcctcagtac
gacaccaagggagagggcatcctgatcacatcccacggagagctgcagtactacctgtct
ctgctcaaccagcagctgcccatcgagagccagatggtgtccaagctgccagatatgctc
aacgctgagatagtactgggcaatgtgcagaatgctaaggatgcagtgaactggctgggc
tacacctatctgtacgtgcgtatgctccgtaaccccaccctgtacggggtctcccatgac
gaccgcagctctgaccccttgctagagcgccgcaggatggacctgatccacactgcagcc
aacgtgctggacaagaacagcctggttaagtacgacaagaggaccggcgccttccaggtt
actgacctgggtcgcatcgccagtcacttctacataacccacaactccatccagacctac
aaccagctgctgaagcccacccttagtgagattgagctgttccgcgtgttctctctctcc
tcagagttcaggaacatcactgtcagagaggaagagaagctggagctgcagaagcttctg
gagagagttcccattccagtgaaggagagcattgaggaacccagtgctaagatcaacgtg
ctgctccaggcttacatctctcagctcaaactggagggctttgctctgatggctgacatg
gtctatgtgacacagagtgctggaagactgatgcgagcaatctttgagatcgtcctgagc
aggggatgggcccagctcacagacaagaccatgaacctctgcaagatgattgacaagagg
atgtggcagtccatgtctcctctgcgtcagttcaggaagctcccagaggaagtcatcaag
aagatcgagaagaagaacttccccttcgagcgcctctatgacctcaaccacaatgagatt
ggtgagttgatccgcatgcccaagatggggaagaccatccacaagtacgtgcaccagttc
cccaaactggacctggccgtccacctgcagcccatcacccgttccacactgaaggtggaa
ctcaccatcacaccagacttccagtgggatgacaaggtgcatggctcatcggaggccttc
tggatactggtggaggatgtggacagtgaggtcatcctacaccacgagtacttcctgctc
aaggccaagtacgcccaggacgagcacctggtcaccttctttgtgcccgtgtttgagccc
ctgcccccgcagtacttcatccgtgtgtcctcggaccgttggctatcctgtgagacgcag
ctgccggtgtctttccgacacctgatcctgccagagaagtacccccctcccactgagctg
ctggacctacagcccctgcctgtgacagctctgcgtaatgccgccttcgagaccctctac
cagaacaagttccccttcttcaaccccatccagacacaggtgttcaacgctgtgtacaac
agtgacgacaacgtgtttgtgggagccccaaccggcagtgggaagaccatctgtgctgag
tttgccatcctgaggatgctgctgcacaatgcagagggccgctgtgtctacatcacaccc
atggaggccctggctgaacaggtgtttgttgactggcaccagacgttccaggatgctctg
aataagaaggtggttttgctgacaggagagaccagcactgacctgaagctgctgggcaag
ggtgacatcatcgtcagcaccccggacaaatgggacatcctgtcgcgccgctggaagcag
aggaagaacgtccagaacgtcagcctcttcatcgtggacgagactcacctcattggagga
gagaatggacctgtgttggaggtgatctgctccaggatgaggtacatctcgtctcagatt
gagcgtcccatccgcatcgtggccctcagctcctccctgtccaacgccaaagacgtggcc
cactggctgggctgcagtaccaccgcaacctttaacttccaccccaacgtcaggcctgtc
cctctggagctgcacatccagggcttcaatgtgagtcacacccagactcgcctgctgtcc
atggccaagccagtgtaccacgccatcatgaagcactccccctccaaaccggccgtggtg
tttgtcccatcccgccgacagacccgcctcaccgccattgacatcctcaccttctgtgct
gctgacgtggtccctcagaggttcctgcactgcactgagaaggacctggctcccttcctg
gagaaggtgacagacggcaccctgaaggagacgttggccaatggggtgggctacctgcat
gagggcctgtccaccacagagcgcaggattgtggagcagctcttcaactcaggtgcagtc
caggttgtggtggcttcacgctccctctgttggggcaccaacatctctgctcacttggtt
gttatcatggacacccagtattacaacggcaaaatccatgcctacgtggactaccctatt
tacgatgtgctccagatggtgggcaaggccaaccggcccctgcaggacgatgagggacgc
tgtgtcattatgtgtcagggttccaaaaaggatttcttcaagaagttcctgtatgagccc
ctgccggtggaatctcacctggaccactgtatgcacgaccacttcaacgctgagatcgtc
accaagacggtggagaacaaacaggacgcagtggactacctgacctggaccttcctgtac
cgccgcatgacccagaaccccaactactacaacctgcagggcatgtctcaccgtcacctg
tcagaccacctgtcagagctggtggagaacaccctgcatgatctagagcagtccaagtgc
atcagcatcgaggatgagatggacgtggcacctcttaacttgggcatgatcgctgcctac
tactatatcaactacaccaccatcgagttgttcagtatgtccctgaacgccaagaccaag
attcgtggattgattgagatcatctccaatgctgcggagtacaagaacattcccatcaga
caccatgaggacaacctgctcagacagctggcccagaaggtgccacacaaactgaacaac
cccaagttcaacgacccacacgtgaagaccaatctgctgctgcaggctcacttgtccagg
atgcagttgagcgctgagctgcagtcagacacagaggagatcctcagcaaggctgtgcgt
ctgatccaggcctgtgtagatgtgctgtccagtaacggctggctgagccctgcgctggct
gctatggagctggcccagatggtcacccaggccatgtggtccaaggactcctacctcaaa
cagctgccttacttcaccttggagcacatcaaacgctgcacagacaagggtgtggagagt
atctttgacatcatggagatggaggatgaggatcgtagtgggctgctgcagctctcagac
acacagatagctgacgtggctcgcttctgtaaccgctaccccaacattgaactgtcctac
gaggtggcagagaaggagaatatcaagagtggaggtccagttttggttctggtccagttg
gagagagaagaggaggtgactgggcctgttattgctccactcttcccccagaaacgtgag
gagggctggtgggtggtaattggagaccccaaatccaacagcctgatctccatcaagagg
ctgacactgcagcagaaggccaaggtgaagctggactttgttgcaccagtgctgggcatt
cacaactacacactgtacttcatgagtgatgcctacatgggctgtgatcaggagtataag
ttcagtgtggacgtgaaggaggcagaaagcgatggagacagtgactcagactaa
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integrated database retrieval system
