Oncorhynchus tshawytscha (Chinook salmon): 112262972
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Entry
112262972 CDS
T05605
Name
(RefSeq) GTPase-activating protein and VPS9 domain-containing protein 1 isoform X1
KO
K27566
GTPase-activating protein and VPS9 domain-containing protein 1
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112262972
Membrane trafficking [BR:
otw04131
]
Endocytosis
Rab GTPases and associated proteins
Rab associated proteins
112262972
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RasGAP
VPS9
DUF5601
DUF5740
Motif
Other DBs
NCBI-GeneID:
112262972
NCBI-ProteinID:
XP_024294645
LinkDB
All DBs
Position
LG12:32053983..32084673
Genome browser
AA seq
1474 aa
AA seq
DB search
MVKPDIHTLAHHLKQERLYVASEKQLIQRLNGDVLKTAERLYRAAWITKQQRINLDRLIL
TSAEASPAECCQHAKVLEDTQFLDGYKTLGFQESIYGEFLGRVRENPRLLASCLVAGERL
NQEHTQGVIYTVFTSLYGNCIMQEDERYLLQVLRYLVEFELKESDNPRRLLRRGTCAFSI
LFKLFSEGLYSAKLFLTATLHEPIMQLLVEDEDHLETDPSKVTERFTPAQQERLFGEKGS
EGYRQKVAAAVEANEAKLVTLVNKFIGYLKQNTYCFPHNLRWIVSQMYKTLSCVERLEVG
EVRTMCTDLLLTCFICPAIVNPEQYGIISDAPINEVARFNLMQVGQLLQQLAMADDDGDP
RRKNSLAKFDKSCVAAFLDVVIGGRAVETPPMSSMNLLEGLSRTVAYMTHSQLLCLVDFV
RSVMAGDHLREEEHMLLETMLANVPQSRTVKSNSLELTPSNTPQLSPATTPANKKNRNIG
QQLATSWDSTTTTLSAHIPLVTPFASRSRSRSELAQQGEAEASSLESLQEVMPEEVLVIS
LGSSPQTIPGMMSENEVLTMQLTDGSQGDTPADDTKHHGKPDKTLRFSLCSDNLEGISEG
PSNRSNSVSSLDLEGESVSELGAGPSGSNGVEALQLLEHEHATTQDNLDDKLRKFEIRDM
MGLTDDRDISETVSETWSTDVLGSDFDPNMDEDRLQEIAGATVENMLGSLLCLPGSSSVL
LDPYGSTISETTSEAWSVEVLPSDSEAPDLKQEERLQELESCSGLGSTSDDTEVREVSSR
PSTPGLSVISATSEDRGKTEDLRSECSSDFGGKDSVTSPDGEESSHGAHHSLASPASQAD
SLLAMFDPLSSGEGFSTGTIVRPKVHYARPLHPPPDPPIPETCALGQEPRYSLFTPHCLA
QAELEHTKQRHSYPDRLVRSRSSDIVCQGRRPTSDPGLNRRAAAEERDPAGHFSMGPSSS
PSKDSLKGEVEERKDSDEEKSDRNRPWWKKRFQSAIPKVLYWTAESEVPAPIAFRKRDRQ
EKDDVGHERVPQDDTMSRNSQAQAAEDILDKYRNIKRTSPSEGATAAAYDTTGELCGEEG
LHDEALQNMSTDDLPDSASQTAQQHDSSKFSFSDAKKKLRLALCSADSVAFPLMAPATTR
NGLPDHTDSEDNEIVCFLKVQLAEAINLQDKNQMAQIQETTRCVSRFDARTCRKLLAAIA
EDYRKRAPYIAYLTRCRQGLQTSQAHLERLLQRVLRDKEVANRYFTTVCVRLLLEHMEAK
SLDFIKAFQGCTASDDKTAAVEDFLRYLYGAMAHDAIWQYASEDQLQDAQMAIERSVMNR
IFKLAFYPNQDGDILRDQLLQEHIARLSKVVTANHKALQIPEVYAREAPWPSAQSEIRTI
SAYKTPRDKVQCILRMCSTIMNLLSLANEDSVPGADDFVPVLVFVLIKANPPCLLSTIQY
INNFYASRLSGEECYWWMQFTAAVEFIKTIDDRK
NT seq
4425 nt
NT seq
+upstream
nt +downstream
nt
atggtgaagccagacatccacactctggcccaccacctgaagcaggagcggctgtatgtg
gcttcagagaagcagctgatccaacggctcaacggggacgtgctgaagactgctgagagg
ctgtaccgtgctgcctggatcaccaaacagcagaggatcaacctcgaccggctcattctc
accagtgctgaggcctccccggccgaatgctgccaacatgccaaagtgctggaggacacg
cagttcctggacggctacaagactctgggctttcaggagagcatctatggggagttcctg
ggtcgggtgcgcgagaaccctcggctgttggcctcctgtctggtggctggggagaggctg
aaccaggagcacacacagggggtcatttacacggtcttcacctccctctacggtaactgt
atcatgcaggaggatgagcgctacctgctgcaggtcctccgctacttggtggagtttgag
ctgaaggagagcgacaaccctcggcggctgctgcggcggggcacgtgcgccttcagcatc
ctcttcaagctcttctccgaggggctgtactcggccaagcttttcctcaccgccactctc
cacgagcccatcatgcagctgctggtggaggacgaggaccacctggagacggacccctcc
aaggtgacggagcgcttcacgccggcccagcaggagcgcctgtttggggagaagggctcg
gagggctacagacagaaggtggcagctgccgtggaagccaacgaggccaagctggtgacc
ctggtcaacaagttcatcggctacctgaagcagaacacctactgcttcccccacaacctg
cgctggatagtgtctcagatgtacaagacgctatcgtgcgtggaacggctggaggtgggt
gaggtgcggaccatgtgcacggacctgctgctcacctgcttcatctgcccagccatagtc
aaccctgagcagtacggcatcatctcagacgcccctatcaacgaggtggctcgcttcaac
ctcatgcaggtagggcagcttcttcaacagttggcaatggctgacgatgatggagacccc
cggaggaaaaacagtttggccaagttcgataagagctgtgtagctgccttcttggatgtg
gtaatcggagggagagctgtggagacaccgcccatgtcctccatgaacctactagaagga
ctcagcaggactgtggcgtacatgacacacagtcagctcctctgcctggtggactttgta
cggagtgtgatggcaggggaccacctccgggaggaggagcacatgctcctggagaccatg
ctggccaacgttccccagtcccgcacggtgaagagcaacagtctggagctcaccccctcc
aacaccccccagctctccccagccaccacccccgccaacaaaaaaaacaggaacatagga
caacagttagcaacttcctgggactccacaaccaccaccctgtctgctcacattccatta
gttaccccttttgcctcccgcagtcgtagccgttccgagctggcccagcagggggaggca
gaggctagctctctggagtccctgcaggaggttatgccagaggaggtgctggtgatctca
ctaggaagcagcccgcagaccatccctgggatgatgtcagagaatgaggtgttgaccatg
cagctgactgatgggtcacaaggggacactcctgcagatgacaccaagcaccatggcaag
ccagacaaaaccctacgcttctccctctgcagtgacaacctggagggcatctcagagggt
ccatccaaccggtctaactccgtgtcgtctctggacctggagggagagtctgtgtctgag
ctgggagctgggccatcagggagcaatggggtggaggctctacaactgctggagcatgaa
catgccaccactcaggacaacctggatgacaaactgcgtaagtttgagatccgcgacatg
atgggcctgacagatgaccgggacatctctgagacagtgagtgagacctggagcacagac
gtgctgggcagcgactttgaccccaacatggatgaggatcgactgcaggaaatagctggg
gcgactgttgagaacatgctgggcagcctgctgtgcctaccaggctccagctcagtgctg
ctagacccttatggatccaccatctcagagaccaccagcgaggcctggagtgtggaggtc
ctgcccagcgactcagaagcgccagacctgaagcaggaagagcgtctacaggagttggag
agctgctcagggctgggcagcacctccgatgacacagaggtcagagaggtcagctcccgg
cccagcaccccagggctcagcgtcatctcagcgacatcagaagatagaggcaagacggag
gacctgcggtcggagtgcagctcggactttggggggaaggactctgtgaccagtccagat
ggggaggagtcgtcccacggagcacaccacagtttggcttctccggcctcgcaggcagac
tccttactggccatgttcgatcccctatcctccggggaaggtttctctactggtaccatc
gtgaggcccaaagtgcactacgccaggccccttcatcctccccctgaccctcccatccca
gagacctgtgccctcggccaggagccccgctactccctgttcacgccccactgcctggcc
caagccgagctggagcacaccaagcagcgccactcctacccagacaggctggtacgcagt
cgcagctctgacattgtctgccaaggccgccggcctaccagcgacccgggcctcaaccgc
agagcggcagccgaggagcgggatcctgccgggcacttctccatggggccgtcctcgtcc
cccagcaaggattccctaaaaggagaggttgaggagagaaaggacagtgatgaggaaaag
tctgatcgcaacagaccatggtggaagaaacgctttcagtcagccattcccaaagtgctg
tattggacggctgagagtgaagtcccagctccgatagccttccggaaaagggacaggcag
gagaaagacgatgtgggccatgaacgcgtcccacaagatgacactatgtccaggaactcc
caggcccaggcagcagaagacatcctggacaaatacaggaacatcaagaggaccagccct
agtgaaggagccaccgctgcagcctatgacaccacaggagagctgtgtggagaggagggt
ttacacgacgaagctctgcagaacatgtccacagacgacctgccagactcagccagccag
acagcccagcaacacgactccagcaagttctcattcagtgatgcaaagaagaagttgaga
ctggccttgtgttcagcagactctgtggctttccccctcatggctcctgccaccacacgc
aatgggctgcctgaccacacggactctgaagacaatgagatcgtgtgcttcctgaaggtc
cagctggcggaggccatcaacctgcaggataagaaccagatggcccagatccaggagacc
actcgctgcgtcagccgcttcgacgcacgtacctgcaggaagctgctggcagccatcgcc
gaggattacaggaagcgggcgccctacatagcgtatctgacgcggtgtcgacaaggcctg
cagacgtcccaggcccacctggagcggctgctgcagcgggtgctgagggacaaggaggtg
gctaaccgctacttcaccacagtctgtgttcgcctcctactggaacacatggaggcgaag
tccctggacttcatcaaagccttccaggggtgcacagcgtcagacgacaagacggcggcg
gtggaggacttcctgcgctacctgtacggggccatggcccatgatgccatctggcagtat
gccagcgaggaccagctgcaggatgcccagatggccatagagcgcagcgtcatgaaccgc
atcttcaagctggccttctaccccaaccaggacggggacatcctgagagaccagcttcta
caggaacatatagcgcgtctctcaaaggtggtgacggcaaatcacaaagctcttcaaatc
ccagaggtgtatgcgagggaggctccctggccatctgcccagtcagagatccggaccatc
agtgcctacaagactcctcgggacaaagtgcagtgtatcctgcgcatgtgttccaccatc
atgaacctcctgagtctggccaacgaggactctgtccctggagctgacgacttcgtccct
gtgcttgtctttgtcctgataaaggcaaacccgccctgcctgctgtccactattcagtac
atcaataatttctacgccagccggctgagtggggaggagtgctattggtggatgcagttc
accgcggcagtggaattcattaagacaatcgatgatcgcaagtga
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integrated database retrieval system
