KEGG   Oncorhynchus tshawytscha (Chinook salmon): 112263005
Entry
112263005         CDS       T05605                                 
Name
(RefSeq) splicing factor 3A subunit 1 isoform X1
  KO
K12825  splicing factor 3A subunit 1
Organism
otw  Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:otw00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    112263005
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:otw03041]
    112263005
Spliceosome [BR:otw03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    112263005
 Complex B
    112263005
 Complex C
   U2 SnRNP specific factors
    112263005
SSDB
Motif
Pfam: PRP21_like_P Surp ubiquitin Rad60-SLD Ubiquitin_2
Other DBs
NCBI-GeneID: 112263005
NCBI-ProteinID: XP_024294713
LinkDB
Position
LG12:34398834..34413915
AA seq 790 aa
MPPGPVQLVQLEPNSKADEPTGETPATKPIVGIIYPPPEVRNIVDKTASFVARNGPEFEA
RIRQNEINNPKFNFLNPNDPYHAYYRHKVNEFKEGKGQEPSAAVPKVMQQQALLNSQQLP
QKVQAQVIHETVVPKEPPPEFEFIADPPSISAFDLDVVKLTAQFVARNGRQFLTQLMQKE
QRNYQFDFLRPQHSLFNYFTKLVEQYTKILIPPKGLLMKLKREAENPREVLDQVRYRVEW
AKFQERERKKEEEEREKERVSYAQIDWHDFVVVETVDFQPNEQGHFPPPTTPEELGARIL
TQERYDKFGESEEVEMEVESEDEDDVEQEDRDDGRPTQPDQDTQLQDMDEGSDEEDDGKA
PLPPDNPMPPPLPPTPDQVIIRKDYDPKASKPQPPTKTLDEFLISPITGERIQASKMQEH
MRIGLLDPRWLEQRDRGIRERQIEDEVYAPGTDIESSLKQLAERRTDIFGVEETAIGKKI
GEEEIQKPEEKVTWDGHSGSMARTQQAAQANITLQEQIEAIHKAKGLVQEDESKEKIGPS
KPELYHHHHQSPLISSAPLLPKPSPPMNTMARAPPSMLPPVRTTLLSAVPVIPRPPMAPV
QMRLAPGQVLTPMPPMMHAPRINVVPMPQPPHMMAPRPPPMVVPTAFVPAPPVPQPPRPR
PDPQPPSQPPPPHNDEPASKKMKTEDNLMPEEEFLRRYKGSVSITVQVPNMQDKTEWKLS
GQALNFTIPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNINNGSVIHL
ALKERGGRKK
NT seq 2373 nt   +upstreamnt  +downstreamnt
atgccgcctgggcctgtacaacttgttcagcttgagcccaacagcaaggcagatgagcct
acaggggaaaccccagcaacgaaacccatagttgggatcatctatccacctcctgaggtc
cgaaacattgttgataagactgccagctttgttgccaggaatggaccagagttcgaagca
aggatccgtcagaatgagatcaacaacccaaagttcaacttcctgaaccccaatgacccc
taccatgcttactatcgccacaaggtcaatgaattcaaggagggcaagggccaggagccg
tctgcggccgtgccaaaggtcatgcagcagcaggccctgctgaactcacagcagcttcct
caaaaggtgcaggcccaggtgattcatgagacagtggtgccaaaggagcctccgcctgag
tttgagttcattgctgaccctccttcaatctctgcattcgacctggatgttgtcaagctg
accgcccagtttgtggctcgcaacgggcgccagttcctcacacagctcatgcagaaagaa
cagcgaaattaccagtttgacttcctgcgacctcaacacagcctcttcaactacttcacc
aagctggtggagcagtacactaagattctgatccctcccaagggactgctcatgaagctg
aaaagagaggctgagaaccccagggaggtgctggaccaggtgaggtaccgcgttgagtgg
gcgaagttccaggagcgtgaaaggaagaaggaggaggaggagcgagagaaagagcgtgtg
tcctacgcccaaattgactggcatgactttgtagtggtggagaccgtggacttccaacct
aatgagcaaggccactttcccccacccaccacacctgaggagctgggagctcgcatcctg
acccaggagcgttatgacaagtttggagagagcgaggaggtggagatggaggttgaaagt
gaggacgaggatgacgttgagcaggaggatcgggatgatgggcgtcccacacagcctgat
caggacacacagctgcaagacatggatgagggttctgatgaagaggatgatggcaaggca
ccattgcccccagacaaccccatgccacccccactgccacctactccagaccaggtcatt
atccgcaaggattacgaccccaaagcctccaagccccagcctccaaccaagactctggat
gagttcctcatctctcccatcacgggtgagaggatccaagccagtaagatgcaggagcat
atgcgcatcggactactggatccccgctggctcgagcagagggaccgcggcatcagagag
aggcaaatagaggatgaggtttacgcccctggcactgacattgagagcagcctgaaacag
ctggctgagaggcgtactgatatctttggtgtggaggagaccgccatcggtaagaagatt
ggagaagaggagatccagaagcctgaggagaaggtgacctgggatgggcactctggcagc
atggcgcgtactcagcaggcagcacaggccaacatcaccctacaagagcagattgaggcc
attcacaaggccaagggactggtgcaggaggatgaaagcaaagagaagattgggccaagc
aagcctgagctttaccatcatcatcatcaatcacccctcatctcctctgccccccttctg
cccaaacccagccctccaatgaacacgatggctcgggcccctccttccatgctgccccct
gtacgcaccactctcctgtcagctgtgcctgtgattccacggccccccatggcccctgtg
cagatgcgcctagccccagggcaggttctaacacccatgccccccatgatgcatgctccc
cgcatcaacgtggtgcccatgccccaaccacctcacatgatggcccccagaccaccaccc
atggtggtcccaactgcatttgtccctgcccctccagtcccgcagcccccccggccccgc
cctgacccgcagccaccttcccagccacccccaccccataatgatgagcctgccagcaag
aagatgaagacagaggacaacctcatgccagaggaggagttcctccgtagatacaagggt
tcagtgtccatcacagtgcaagttcccaacatgcaggacaagactgaatggaagctaagt
ggacaagcgctcaatttcactatcccactcacagatcaggtgtctgttattaaagtgaaa
atccatgaagccactggaatgccagccggaaagcaaaagctgcagtatgagggaattttc
atcaaagattccaactcgctggcctactacaacataaacaacggttcagtcatacacctg
gcactgaaggagagaggtgggagaaagaagtga

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