Oncorhynchus tshawytscha (Chinook salmon): 112263021
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Entry
112263021 CDS
T05605
Name
(RefSeq) hepatocyte nuclear factor 1-alpha isoform X1
KO
K08036
transcription factor 1, hepatocyte nuclear factor 1-alpha
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
otw03000
]
112263021
Transcription factors [BR:
otw03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain POU
112263021
BRITE hierarchy
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GFIT
Motif
Pfam:
HNF-1B_C
HNF-1_N
HNF-1A_C
Homeodomain
Telethonin
HTH_37
Homeobox_KN
Motif
Other DBs
NCBI-GeneID:
112263021
NCBI-ProteinID:
XP_024294742
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Position
LG12:complement(34781603..34788868)
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AA seq
558 aa
AA seq
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MEGEERKGEAGPGPGRLSALQEQLIWALLGSGLSREVLVHALGELERERVTPGAEKGDRG
DGESSEEGEMDFPPPIFQELEALAPEEAARQRALVDQLLQEDPWRVAKLVKSYMQQHNLP
QREVVESTGLNQSHLSQHLNKGTPMKNQKRAALYSWYVRKQGEISQQFTNARHALGSGEE
QGEDVRKGRRNRFKWGPASQQILFHAYERQRNPSKEEREGLVEECNRAECLQRGVSPSQL
AGLGSNLVTEVRVYNWFANRRKEEAFRHKLALDMPYNSQSASSTNHTLSHSPEQGMKYSQ
QITCDNLGSSRGHNGDRGLGGRLASPIQLEPSHTLLETHHHKPVSGGGPLPPVSTLTSLH
SLSSSPAPHHGLIMTSLPSVMSLGESSLLIGQTVPVINNVGGGFTTLQPISFQQQLHSTS
QQQLTQQFQSHMGHHSPFMATMTQLPCHMYSKSDMSHYPPSSLLSQAMVITDSSSLGTLT
SLTTVRQILTTDPEEQTDQQIQEDSLHLQSPSPVPVSSGNLQLYPPSQSSETHPPHRLSS
SPADINSYIPAQMVSTAQ
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atggagggagaggagaggaaaggagaagcagggcccggccctgggcgtctgtctgctctc
caggagcagctgatctgggctctgctgggctctggactgtcccgggaggtcctggtccat
gccctgggagaactggagcgagagagggtcacccctggagcagagaagggggacaggggg
gatggcgagagttcggaggagggagaaatggattttccaccccccatattccaggagctg
gaggccctagccccagaggaggcagccagacagagggctctggtcgaccaactgcttcag
gaggatccatggcgcgtggcaaaactagtgaagagctacatgcagcagcataacctcccc
cagagagaggtggtcgagtccacaggcctcaaccagtcccatctctcccagcacctcaac
aaaggcacgcccatgaagaaccagaaacgggctgctctatacagctggtacgtcaggaag
cagggcgagattagccagcagtttactaatgccaggcatgcccttgggtctggagaggag
cagggagaggatgtgaggaagggacgtaggaacaggttcaaatggggacccgcctcccag
caaatcctcttccacgcctatgaacgacagaggaacccaagcaaagaggagagagaggga
ttagtggaggagtgtaacagggctgagtgtcttcagaggggtgtgtctccgtcccagctg
gctggcctgggctctaacctggtgacagaggtacgagtgtacaactggttcgctaaccgc
cgcaaggaggaggccttccgccataaactggctcttgatatgccttacaacagccaatca
gcaagctccaccaaccacacactctcacacagccctgagcaaggcatgaagtatagccag
caaatcacatgtgacaatctggggtcatcgaggggtcacaatggagacagaggcttgggg
ggccgcctggccagccccattcaactggagcccagccacacactcctggaaacacaccat
cacaaaccagtatcaggtggtggccccttgcccccagtcagcaccctgacatcactgcac
agtctgtcttcctcgcctgctccccaccatggactcatcatgacctccctgcccagcgtc
atgagtctgggagagtcctctctcctcataggtcaaaccgtacctgtcatcaacaacgtg
ggaggcgggttcaccacccttcagccaatctctttccagcagcagcttcattccacttcc
cagcagcaactcacacagcagttccagagtcacatgggccaccacagtcctttcatggca
accatgacacagcttccatgtcacatgtacagcaagtctgatatgtcccactaccctccg
tccagcctactgtcccaagcaatggtcatcactgacagcagcagccttggaacactgacc
agtctaaccacagtcagacagattctgaccacagaccctgaggagcagacagaccaacaa
atccaggaggactccctacacctgcagtccccttcacctgtgccagtttcctctgggaat
ttacagctgtatcctccatctcaatctagtgaaactcatccacctcaccgcctctcctct
tcgccagcagacatcaactcctacattcctgcacagatggtctctaccgcacagtag
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