Oncorhynchus tshawytscha (Chinook salmon): 112263025
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Entry
112263025 CDS
T05605
Symbol
msi1b
Name
(RefSeq) RNA-binding protein Musashi homolog 1 isoform X1
KO
K14411
RNA-binding protein Musashi
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
112263025 (msi1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
otw03019
]
112263025 (msi1b)
Messenger RNA biogenesis [BR:
otw03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
112263025 (msi1b)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_7
RRM_PARP14_3
PHM7_cyt
NID
Nup35_RRM_2
Motif
Other DBs
NCBI-GeneID:
112263025
NCBI-ProteinID:
XP_024294746
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Position
LG12:34797162..34836316
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AA seq
370 aa
AA seq
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MDTEGSQSSLSSTDSPHDPCKMFIGGLSWQTTQEGLKEYFCKYGEVKECMVMRDPVTKRS
RGFGFVTFVDQAGVDSVLAVTRHELDSKTIDPKVAFPRRAQPKLVTRTKKIFVGGLSVNT
TIDDVKAYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEMHFHEINSKMVE
CKKAQPKEVMSPTGSARGRSRVMPYGMDAFMLGIGMLGRGQHCFTQTQTHDCPFTIGYPG
FQTATYTSRSYTGITPGYTYQFPEFHLERTPLLTSPHPPELTAIPLSAYGPMAVAAAAVA
RGSAPSRSGGFGSPGPMADLYAAANQESAVSSYLSAASPSPNTGFGHSLGVRHSPYHGPL
IATAFTNGYH
NT seq
1113 nt
NT seq
+upstream
nt +downstream
nt
atggatacggaagggagccagagcagcctgtcctccacggactcccctcacgacccctgc
aaaatgttcataggcggtctcagctggcagacgacacaagagggattgaaagagtacttt
tgcaagtatggcgaggtgaaggagtgcatggtgatgcgggatccagttaccaagcgctct
aggggttttggatttgtcacgtttgttgaccaggccggtgtggattcagttttggcagta
accaggcatgagttggattcaaaaacaattgatccgaaagttgcattccctcgtagagcc
cagcccaagctagtgactcggaccaagaagatttttgttggaggtctgtccgtgaacacg
accattgatgatgtcaaggcgtatttcgagcagttcggaaaggttgatgatgccatgctc
atgtttgacaagaccaccaacagacacagagggtttggctttgtcacgtttgagaatgag
gatgtggtggagaaagtgtgtgagatgcacttccatgagataaacagcaaaatggtggag
tgtaagaaggctcagcccaaggaagtgatgtcacccacgggctcggccagggggcgctct
cgggtgatgccctacggcatggatgccttcatgctgggcatcggcatgctgggcaggggg
cagcactgtttcactcaaacacagacccatgactgtcctttcaccataggttacccaggg
tttcagacagctacgtatactagtcgaagttacactggcatcacccctggatatacctat
caattccctgaattccatttagagaggaccccccttctgacatcaccacacccccctgag
ctcacagccattcctctgtcggcatacggaccaatggcagtggcggcagcagcagtagca
agaggctccgccccctctcgctctggggggttcggcagccctgggccaatggcagactta
tatgcagcagccaatcaggagtctgctgtcagcagttacctcagcgctgcaagcccctcc
ccaaacactgggttcggccatagtctgggggtaagacacagcccttatcacggtcctctg
attgctacggccttcactaatggctaccactga
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