Oncorhynchus tshawytscha (Chinook salmon): 112263104
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Entry
112263104 CDS
T05605
Name
(RefSeq) voltage-dependent N-type calcium channel subunit alpha-1B-like isoform X1
KO
K04849
voltage-dependent calcium channel N type alpha-1B
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04010
MAPK signaling pathway
otw04020
Calcium signaling pathway
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
112263104
04020 Calcium signaling pathway
112263104
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
otw04040
]
112263104
Ion channels [BR:
otw04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
112263104
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
Ion_trans
GPHH
Ca_chan_IQ
PKD_channel
Phage_TAC_15
Motif
Other DBs
NCBI-GeneID:
112263104
NCBI-ProteinID:
XP_042150818
LinkDB
All DBs
Position
LG12:36782840..36929271
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AA seq
1869 aa
AA seq
DB search
MSMKMYGLGPMSYFHSSFNCFDFGVIIGSIFEVIWAVVKPGASFGISVLRALRLLRIFKV
TKYWNSLRNLVVSLLNSMKSIISLLFLLFLFIVVFALLGMQLFGGLFNFDEETPTTNFDT
FPAAILTVFQILTGEDWNAVMYHGIESQGGVRRGMFSSIYFIVLTLFGNYTLLNVFLAIA
VDNLANAQELTKDEEEQEVAITKKMALQKAKEVKEVSPMSAANISITALHSILYTGQHGA
DRAMPASFVKQSQGALSSSSSVCSVNSLKEQQKSLKMMSVWEQRTTQLRRHNLRASSEAL
YSELDPEERLRMSSALHIRPDMKTHLDRPLVVEPHDGPGPMGQHKPRTPEETDTPEDLAG
PQPRRHHRHRDRERPIDEANENGDPGKEGRHHVHHSRSKDPEGTRGKEGKSERSRSREGG
KRHHHQTLVDEGGGGGGTGEREHRHHHSHRQAREGNGTVNSGGKGERRSRHKDGRSGERC
SRGENGANGERRRHKTHGSRGQSTLEGEDHSEREKGRGHRNRYVESEGDSLAISPQQDPG
DQRWGTEGPEDSDNQRNVRRTGQTAVNIPPVTITPPPGETTLIPMNSIDCETMPMNEEKK
TLEERTQSGPRPILPYSSMFVFGQANVVRRLCHYIVSLRYFEMCILVVISMSSIALAAED
PVQANAPRNNVLKYLDYVFTGVFTFEMVIKMVDLGLLLHPGSYFRDLWNILDFIVVSGAL
VAFAFSGSKGKDISTIKSLRVLRVLRPLKTIKRLPKLKAVFDCVVNSLKNVFNILIVYML
FMFIFAVIAVQLFKGKFFYCTDESKSLEKDCRGNFLDYDKDEVAAQPRVWKKYEFHYDNV
LWAFLTLFTVSTGEGWPDVLKHSVDATSEDQGPSPGYRIEISIFYVVYFVVFPFFFVNIF
VALIIITFQEQGDKAMSECSLEKNERACIDFAINAKQMTRYMPENVQSFQYRMWKFVVSP
PFEYSIMIMIALNTVVLMMKFHGAPDFYEAMLKHFNIVFTALFSLECILKIIAFGPLNYL
KDAWNVFDFVTVLGSITDIVVTEINDRLLNLSFLRLFRAARLIKLLRQGYTIRILLWTFV
QSFKALPYVCLLIAMLFFIYAIIGMQVFGNIELNEDTAITHHNNFRTFLQALMLLFRSAT
GEAWHEIMLSCLSHRACDERSGNLGKECGSDFAYFYFVSFIFLCSFLMLNLFVAVIMDNF
EYLTRDSSILGPHHLDEFIRVWAEYDPAACGRIKYLDMYQMLLHMSPPLGLGKKCPPRVA
YKRLVKMNMPIADDNTVHFTSTLMALIRTALEIKLSSGMVAQRLSDAELKKELSTVWPSL
SQKTMDLLVTPHKPNELTVGKVYAALMIFDYYKQNRAKRLKEQQQQQQQQNAAGSQQEKE
KEKAINNMEPPCELLPQPQPQALPRPSSTLLNNMEPPCELLPQPQALPRPSSTLLNNGGT
LPSHDGTMKGSSSWVSEKSREVHRPRNKTPVQRGQSEDVPNTTLPQESVEMRKMDTSDST
VPGPGSGLESQGRAVSMPRLNAELQRSQSRHSPGTLLAPVPDCSPMKRSASTHAPQRPQE
ANLRDYTLETPSIQERPHHHHHHRCHHRRERDKKQRSLDRTPSTAGTPGDPAAEPSSRDR
VQDRGRSHERKNHSTAGEKQRYYSCDRYGSREHCHTTKSATTSCATSPSEVQDPSINKKG
SGSVKCSPVMMTSGASTPSRGRRQLPQTPLTPRPGVAYKTANSSPVHFVSAQCSSGLPTL
SPGRLSRGLSEHNALLHSGSSHIPSPVTRISSEPFLGYSHREAQGQGSLYCSLRDELLGP
YAARARSPRTALPQMGPGPLHLPPPPQQSHAVPNGYHFTFGGIGNASPESGSGVRAPRYY
HEADEDEWC
NT seq
5610 nt
NT seq
+upstream
nt +downstream
nt
atgtccatgaaaatgtatggactaggacccatgagctacttccattcgtctttcaactgt
tttgacttcggagtgattataggcagtatttttgaggtgatctgggcagttgtgaaacct
ggggcctccttcggcatcagcgtcctgagagctctccgtctgctcaggattttcaaagtc
actaagtactggaattctctgaggaacctggtggtctctctactcaactccatgaagtcc
atcatcagcctgctgttcctcctcttcctcttcatcgtggtgttcgccctactgggcatg
cagctctttgggggactgtttaattttgacgaggagacgccaacaacaaactttgacacc
tttccagcagccattctcacagttttccagattctgacaggagaggactggaatgcggtg
atgtatcatgggatagagtcccaggggggcgtgcgccggggaatgttctcctccatctac
ttcattgttctgaccctgtttggaaactacactctcctcaatgtcttcttggccatcgct
gttgacaaccttgcaaacgcacaggagctcactaaggatgaggaagagcaggaggtggcc
atcaccaagaagatggccctccagaaggccaaggaggtcaaggaggtcagccccatgtcg
gccgcaaacatctccatcacagcgctacacagcatcctgtacacaggccaacatggagcg
gacagggcaatgccagcaagttttgtaaagcaaagtcaaggtgcactctctagcagctcg
tccgtctgcagcgttaattcacttaaggagcagcagaagtctctgaagatgatgtcagtg
tgggagcagcgaaccactcagctgaggagacacaacctgcgggccagcagtgaggccctg
tacagcgagctggaccctgaggagaggcttcgtatgtcctccgccctgcacatccgccct
gacatgaagacccacctggaccggcccctggtggtggaaccccatgacggccccggccct
atgggccaacacaagccccggacccctgaggagacggatacccctgaggacctggccggc
ccccagccacgcaggcaccaccgccaccgggacagggagagacccatcgacgaagccaat
gagaatggtgatccaggcaaagagggtaggcaccatgtccaccacagtcgtagcaaggac
ccagaaggcacccgaggcaaggaggggaagagtgagcggtcgcgcagccgagaggggggc
aagaggcaccaccaccagaccttagtggacgagggaggaggaggaggggggacgggggag
agagagcaccgccaccaccactcccacagacaggccagagaaggcaacggcactgtcaac
agcggaggcaagggcgagcgcaggtcacgccacaaagatggccgctcgggagagaggtgc
tccaggggagagaacggagccaatggggagaggaggagacacaagacccacggctcaagg
ggccagtccacactggagggagaggaccacagtgagagagagaaggggaggggccacagg
aacagatatgtggagtctgagggcgactccctggccatcagcccccagcaggatcctgga
gatcagaggtggggcacagagggacctgaagactcagacaaccagaggaacgtcagacgg
actggacagacggccgtcaacatcccccctgtcaccatcacccccccacccggggagact
acccttatacccatgaacagtatagactgtgaaaccatgcctatgaacgaggagaagaag
accctggaggagcggactcagagtggacccagacccatcctgccttacagctccatgttt
gtgtttggccaggccaacgtggtgcggcgtctgtgtcattatattgtcagcctgcggtac
tttgagatgtgtatcctggtagtgatatccatgagtagcattgcattggctgcagaggac
cctgtccaggccaacgctccgcgcaacaatgtgctcaagtatctggactacgtcttcacg
ggagttttcacatttgagatggtgattaagatggttgacctgggcctcctgctccatcct
ggttcttacttcagagatctctggaacattctggacttcattgtggtcagtggcgcactg
gtggcatttgcattttcagggtccaaaggaaaggacatcagcaccatcaagtccctcaga
gttctgcgagtcttacggcccctcaagaccatcaaacgcctacccaagctgaaggctgtg
tttgactgtgtggtcaactccctgaagaacgtgttcaacatcctcatagtctacatgctc
ttcatgttcatcttcgctgtcatcgccgtgcagctgttcaagggaaagttcttctactgc
accgacgagtccaagagcctggagaaagactgcagaggtaatttcctggactatgataaa
gatgaggtggccgcccagcctcgggtgtggaagaagtatgagttccactatgacaacgtg
ctttgggccttcctcactctcttcactgtgtccaccggagagggctggcctgatgttctg
aagcactctgtggacgctacctctgaggaccagggtcccagtccaggctaccgtatagag
atctccatcttctacgtggtctactttgtggtcttccccttcttcttcgtcaacatcttt
gtggccttgatcatcattaccttccaggagcagggagacaaggccatgtcagagtgcagc
ctggagaaaaatgagagagcctgcattgactttgccatcaacgccaagcagatgacacgt
tacatgccagagaacgtgcagtccttccagtaccggatgtggaagtttgtggtgtcacct
ccgtttgagtactccattatgatcatgatcgccctgaacaccgtggtgctcatgatgaag
ttccatggagctccagacttctacgaggccatgttgaagcacttcaacatcgtcttcact
gccctcttctctctggaatgcattctgaagatcattgccttcggtccgctgaattacctg
aaggatgcctggaacgtgtttgactttgtgacagtgctgggaagtataactgacattgtg
gtcacagaaatcaatgaccggctgttgaatctgagttttctgaggctgttcagagcagct
cgtctcatcaagctgctgaggcagggatacaccatccgtatcctgctgtggaccttcgtc
cagtccttcaaggccctgccctatgtttgccttctgatagcgatgctgttcttcatttat
gccatcattggtatgcaggtgtttggaaacattgagctcaacgaggacacagccatcact
caccacaacaacttccgcacttttcttcaggccctcatgctgctgttcaggagtgccaca
ggggaggcgtggcatgagatcatgctgtcgtgtttgagtcacagagcctgtgatgagagg
tcaggcaacctggggaaggagtgtggcagtgacttcgcctacttctactttgtctccttc
atcttcctctgctctttcctgatgctcaatctgtttgtggctgtcatcatggataacttt
gagtacctgactcgagactcgtctatactggggcctcatcatctggatgagttcatccgt
gtttgggctgagtacgaccctgctgcctgtggccgtatcaagtaccttgatatgtatcag
atgctcctccacatgtccccacccttaggtttgggaaagaaatgtccgccaagagtcgcc
tacaagcggctagtcaagatgaacatgcccatcgctgatgacaacacagtccactttacc
tccactctcatggcgctgatccgcacggccctggagatcaaactgtcctcagggatggtt
gcccagcgtctttctgatgctgaactgaagaaagagctctctacagtttggccaagcctt
tcacagaagactatggatctgttggttacaccacacaaacccaatgagcttactgttggg
aaggtgtatgcagccctgatgatctttgactactacaagcagaaccgagccaagaggctc
aaggagcagcaacagcaacaacagcaacagaatgctgccggctcccagcaggagaaagag
aaggagaaggccatcaacaacatggagcctccctgtgaactacttcctcagccccagcct
caggccctacctagacccagctccaccctgctcaacaacatggagcctccctgtgaacta
cttcctcagcctcaggccctacctagacccagctccaccctgctcaacaacggaggcaca
ctgccaagccatgatggcaccatgaaaggatcgtcctcctgggtgtcagagaagtctaga
gaggtccacagacccaggaataagacacctgtccaaaggggccagtctgaagatgtccca
aacacaacccttccccaggagtcagtggagatgaggaagatggacaccagtgacagcaca
gtgcctggtcctgggtctggactggagagccaggggagggctgtatccatgccccgcctc
aacgcagagctacagaggagccagtcacgccactccccagggaccctgctggcccctgtt
cctgactgcagcccgatgaagcgctctgcgtccacccatgccccacagcgcccccaagag
gcaaacctgcgtgactacaccctggagacgcccagcatccaggaaaggcctcaccaccac
caccaccaccgctgccaccaccgtagagagagggacaagaagcagcggtcactcgacagg
acgccaagcaccgctggtacaccaggagacccggctgcagagccctcgtctagagacagg
gtgcaggaccgcggccgctcccatgagagaaagaaccactcgacggcgggggagaagcag
cggtactactcctgcgatcgctacggcagcagggaacactgccacaccaccaagtctgcc
accaccagctgtgccacctcccccagcgaggtgcaggaccccagcatcaacaagaagggt
agtggttcggttaaatgcagcccagtgatgatgacctcaggggctagcacacccagccgt
ggacgcaggcagctaccccagacccccctgaccccccgccccggggtggcctacaagact
gccaactcctcccctgtgcactttgtgtctgcccagtgtagcagtggcctgcccaccctg
agtcctggccggctgagccgcgggctgtctgagcacaacgccctgctgcacagtggctcc
tcccacatcccctcccctgtcacccgcatcagctctgagcccttcctgggttacagtcac
agggaagcccagggccagggcagtctgtactgcagcctccgggatgagctgctgggcccc
tatgctgccagagcacgctcccctcggaccgcactgcctcagatggggccggggcccctc
cacctgcctccgccaccccagcagagccatgcggtgcccaatggataccacttcaccttt
ggtggtattggcaatgccagcccggagtctggctctggcgtcagggcacccaggtactac
cacgaggcagatgaggatgaatggtgctag
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