Oncorhynchus tshawytscha (Chinook salmon): 112263251
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Entry
112263251 CDS
T05605
Name
(RefSeq) nuclear receptor ROR-beta-like isoform X1
KO
K08533
RAR-related orphan receptor beta
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
otw03000
]
112263251
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
otw03310
]
112263251
Transcription factors [BR:
otw03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
112263251
Nuclear receptors [BR:
otw03310
]
1. Thyroid hormone like
1F. RAR-related orphan receptor
112263251
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
Motif
Other DBs
NCBI-GeneID:
112263251
NCBI-ProteinID:
XP_024295087
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All DBs
Position
LG12:39425921..39455966
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AA seq
482 aa
AA seq
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MHVSPRKMKTDAIAQIEVIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQNNAAYSCPRQ
RNCLIDRTNRNRCQHCRLQKCLALGMSRDAVKFGRMSKKQRDSLYAEVQKHQQRILNERQ
QQTGEAEALARVYSSSLTNGLNTLNHEIGGTYANGHVIELPKGQVNGGAPGGYYHGMDST
QPSPDQSGLDMAGMKHIKQEPVYDLTPVTNLFNYSSYQDSQLAPSNVSMGELDRIAQNII
KSHLETCQYTADELQQLAWQTHSYDDIKMYQSKTRDMLWQQCAIQITHAIQYVVEFAKRI
SGFMELCQNDQILLLKSGCLEVVLVRMCRAFNPLNNTVLFEGKYGGMQMFKALGCDDLVS
AVFDFAKSLCSLQLTEEEIALFSAAVLISTDRPWLMEPRKVQKLQEKIYFALQHIMQKNH
MDEDTLAKLIGRIPTLSALCTLHTEELQAFQQLHPETVNVLFPPLYKELFNPDPNAAITI
PK
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atgcatgtgtctccgcggaaaatgaaaactgatgccatagcccaaatcgaagttatacca
tgcaaaatttgcggagacaagtcatcaggaatccactatggagtcatcacatgtgagggc
tgcaaagggttcttcagacgtagtcagcagaacaacgctgcatactcctgccctcgccag
aggaactgtctgatcgacaggactaaccgaaaccgctgccaacactgccgcttacagaag
tgtctcgcactcggaatgtccagagatgcggtgaagtttggccgcatgtcaaagaagcag
cgagacagcctgtacgccgaggtgcagaaacaccagcagcggatcctgaatgagcggcag
cagcagactggtgaggccgaggccctggcgcgcgtctactcctccagcctgaccaacggc
ctcaacaccctcaaccacgagatcggaggcacctacgccaacggccacgttatcgagctt
cccaagggccaggtgaacggtggtgcccccggcggctactaccacggtatggactccacc
cagccctccccggatcagtcaggcttggacatggcgggcatgaagcacataaaacaggag
cctgtctacgacttgacccctgtgaccaacctgttcaactatagctcctaccaggacagt
cagctggcgccaagcaatgtcagcatgggagagctagatcgtatcgcccagaacattata
aagtctcacctagagacctgtcaatacacagcagatgagctccagcagctggcctggcaa
acacactcctacgatgacatcaagatgtaccagagcaaaacacgagacatgctgtggcag
cagtgtgccatccagatcacacatgccatccagtatgtggtggagtttgccaagcgcatt
tcaggcttcatggagctgtgccagaatgaccagatccttctgctcaagtcaggttgtctg
gaggtggtcctggtcagaatgtgtcgggcgtttaacccactcaacaacacagtgctgttt
gaggggaagtacgggggcatgcagatgttcaaagctctaggctgtgacgatctggtcagc
gcggtgtttgactttgccaagagtctgtgctctctgcagctcactgaggaggaaatcgct
ctgttctccgcagcagtgctcatctccacagaccggccgtggctgatggagcccaggaag
gtgcagaagctccaggagaagatctactttgcgctgcagcacatcatgcagaagaaccac
atggatgaggacacgctggctaagctgattggtcggatccccacgctgtcggccctgtgt
actctccacaccgaggagctacaggccttccagcagcttcatcccgagacggtcaatgtg
ctcttccccccactctacaaggagctcttcaatcccgaccccaatgcagccatcaccata
cccaagtga
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