Oncorhynchus tshawytscha (Chinook salmon): 112263266
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Entry
112263266 CDS
T05605
Symbol
vps13a
Name
(RefSeq) vacuolar protein sorting-associated protein 13A isoform X1
KO
K19525
vacuolar protein sorting-associated protein 13A/C
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112263266 (vps13a)
Membrane trafficking [BR:
otw04131
]
Endosome - Golgi transport
Rab GTPases and associated proteins
Rab associated proteins
112263266 (vps13a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VPS13_mid_rpt
VPS13_ext_chorein
VPS13_DH-like
VPS13_VAB
Chorein_N
VPS13_C
ATG2-VPS13_C
FMP27-BLTP2_C
Fer4_11
DUF5764
Motif
Other DBs
NCBI-GeneID:
112263266
NCBI-ProteinID:
XP_024295113
LinkDB
All DBs
Position
LG12:39913003..39973248
Genome browser
AA seq
3264 aa
AA seq
DB search
MVFESVVVDVLNRFLGDYVVNLDSSQLKLGIWGGDAVLRNLEIKENALSQLDIPFKVRAG
HIGRLELKIPWKNLYTQSVEATLDGVYLLIVPTASIKYDAEKEEKQLQEARQRELQRIEE
TKQKAAEQENPALEKQDTFVEKLVTQVIKNLQVKISNIHVRYEDDVTNPNCPFSFGVSLQ
NLSLQTADENWMPCLLDEKAKLFFKLVQLDNLFAYWNVNSMLYSNHMPDEALRCLQDSIP
GGSTPMNHDFIFRPITADAKLRMNPRSDVDFSSPKVDLVVNLREVAVELNRPQYISILEL
LGSVDMMSRNLPYRKYRPQVHVHTNAYLWWQYVITGIMEVDVKPRLHMWSWQHIRCHRQT
VKQYRELYKAKITSKKPTEKQLRELEEPERTLDIFNITLARQQAEMEASKAGLRIFRPGV
KVEEEESQGWLGWMWSGWSGDCGAEAKEVKTGAFDELMTSAEKAKLYTAIGYSEIAVNHN
LPKNFEDMKINFHMERMSVSMKDNKDQNEILKLTVEDLKSMLTQRPGAQAIKLSAQLSLF
EVTGLASNRPAPTLLSSRKAATVTGTPLLDILFETNPLDESADQRLRVESQPLEIIYDAV
TVNSMSAFFSPPDDLQLDDLTNATLMKLEQFRDRTSTGLMYVIETQKVLDLNVNLMASYV
IVPQTGFYDSTQNLMLLDLGHFKVSSLSREGLPQLSVGRSTIEDIMSRAYDSFDVQLSSL
QFLYSKPDGDWKKARKLRQSALHILEPVDVKVVFSRAMVVTDSRMPKFKISGELPLLSLR
ISDDKVRGVLELIDSIPLPESRPAPRSTNTHSTSKALKQSYTPQLTPRKPTMAELRNSLI
WESGSEEDLFYDAPSSPIGDRPFFPDNMPSPLQRSDSVKRRGLVKKDPKKNMTEFLMTFE
ISKLSVQLCRLSGGEEVTVLHLEIEGLGTELKLRTFDMTSYTFLREICLECPEYMDSEEK
KVHLITTLDNREDDLLTLEYTKADKNGPEFKSEYKNTEQSVKVNFSSLDIHLHTEALLNA
MNFLISLLPPTKEVAPSQEELPTIPEEDEGEGEEGEKKEGSAVAKKTSSKKSKFEDVVNL
HIRADLNCLKVFIRGQSHRIAEIRIEGLVSELLMRKKAVEVLANLKNIVILDCDKEALYK
QCVSIADEEVFAFRMVNHTEATEGDAYLDMGKVDTSVTLTVGCIQVIFLNKFVSSILAFI
NNFQVAKEALAEVTVQAAEKAATGVMELAERSTRISLDVDFNAPVVFLPQSSSSANVIVA
DLGMVTVKNRFAMVPSQMHVKIPPVMDTMTVGLSDLKMYRTTFEEGRFQGEIQLLKPVNL
DLSIQRNLSASWYHSIPDIEITAHLKPMNLILGQDDMTVVLRTLSGNLSETSDSASPPPP
LRTVDRSDTASTKGSQASGGTGSNPTSGNTVVTAAVVETQKSTKLKSTLKLDFKFDSMTL
VLYSPNGTEVQVLDSRDEQLKLAEFTLGTISTSVHMFSDGSMKASVKLTDCLLDDKRCRV
KKITARMMAMRPGAERNVMVEVNYKQGRDGTSLDTVVQDVYLCASMEFLLTVADIFLKAS
QQGFSSATPKNSSSTKPTAAAASKESAPVGVVAKSEINVLVKNPEIVFVADLTRADAPAL
VMTTECELVMKSDLDGQLMTAVVKDLKVVACPFLKEKRNKETTVLQPCQVFFKSTQSSTS
PQAMEVCINALTLKVSPIIINTVITIQSVLSPAGAETPQSELESPVPPDLWERRSWRDLK
LWFLDEEGKDEDAQSLVPLIPQGESLQLAINSICLTLEAGVGHRTVPMLLAKSSFHGDVK
NWSTLINLHSQLNLEVHYFNEVMGVWEPLLEPLEDENRDGFRPWTLGLKMKKKPVKYTGI
SEEVDYSIPDYKTVISISSKDQLNITLSKCGLGMLSNLGTAFAEAAKQASDSFQKDEAPF
VVKNRLGLTVSVVHSELFSPLGREATARRVELQDGESLNMDYRHTTTHSDQFSAMTSLVA
KDYYIQPTPVGHTSTGMIPLIKVGRGMYSVVHKDSGVTRFLVCQIYSVEGSKYIKIRSPF
QIINHFSIPFRVMEGSTSLGISLPTEEFCVPLDSYRSELRLQPVTEGDDQYDCSEGFSYE
LVSLQPGARVQQTCHRHGDSAGVLMVNIVPLKDTVTSQHTGMAGEHFDEPYILHLWPSVL
LRNLLPYPITYRLQDSEEPAPITLMDGHSAQLHTAIMDQSSLELRLLDYLGQDWQAHYGL
CGDLDEITFIVFSSLRDEEEVVRLGEGGEGKRAELDIAVHVKYDAGQTEVAIHSPYWMVN
KTGRLLQYKADDIHRKHAMDYDMPLLFSFKPHNFLQNNKVRLMISDSDLSDDFSLDTVGS
YGEVKCKGRLKDYVIGVKIDASSFSLTRIVSFVPYYLLVNRTKHVIWVGEEGQDDWTEAR
PQQAAIPFWPERDSKKLKVKVEGSRSTPQTMDFTKPENCLLLHLDNTLGGVIMDVNLSDH
SIIIRFSDYHDGAAPFLIINHTQEQTVEFYQRFRRDSSEWVADELLGLSFSVEETQPSSQ
KEKDKLSPGKAMYYTWAEPTGSRSLAWQCGSYSGELRSEEDLRLDVNEEGMLYLISFYEG
LQRVALFTEDRRIYKLLCESEKAELAEQEIILSLQDVGVSLVNNSSRQEVSFIGITSSDV
VWESKPKKKSRWKPLSGKDAELLETHFKEYTESGPVDNAILDLENNFQVSLTHNGQDMRM
MQPYDAPIRRSFLPGVKVEYSVSARQSAYRVQINRIQIQNQLPGAIFPYVFYPIKLPKSV
TMDSEPKPLTDISIVTRAAGHSDISRIKYFKVLIQEMDLKLDLGFLYAILDLFTPENASV
MTSEQQVELFEKDIEYLKTELNDVSATDTSPISLYEYFHISPIKLHLSFSLSSGGEDGNK
EKRETEIIPVQSLNLLLKSIGATLTDVQDVVFKLAFFELTFQFRTRQQLQWEVIRHYSKQ
AIKQMYVLVLGLDVLGNPFGLIRGLSEGVEAFFYEPYQGAIQGPEEFVEGMALGVKALVG
GAVGGIAGAASRITGAMAKGVAAMTMDEEYQQKRREAMNKQPSGLREGLTRGGKGLVSGF
VSGITGIVTKPIKGAQKEGAAGFFKGVGKGLVGAVARPTGGIIDMASSTFQGIKRAAETS
QDVESLRPPRFIHEDGVIRPYKEREGIGSQMLQKIENGRFAKYRYFAHAKVNESDFLMIT
KRGIFFVTKGTFGQLTCEWQYLFDEFTKEPMIVEGRRLRIEAKERVKSVFHAKEFGKIIN
FRSPEIAKWVLTKLEDARESLHKY
NT seq
9795 nt
NT seq
+upstream
nt +downstream
nt
atggtcttcgaaagcgtggtggtagatgtcctaaacaggtttttaggggattacgttgta
aaccttgacagctcacaactcaagctcgggatttggggaggtgatgcagtgctcagaaat
cttgaaataaaggaaaatgccttgagtcaacttgacattccttttaaagtaagagcaggg
catataggacgcttggagttgaagattccatggaagaatctgtacacccagtcagtggaa
gccacgctggatggagtctacctactcatcgtgcccacagccagtataaagtatgatgca
gagaaggaggagaaacagctccaggaggctcgtcagagggagctgcagaggatcgaagag
accaaacagaaagcagcagagcaagaaaaccccgcacttgagaagcaggacacctttgtg
gagaaacttgtgacgcaggtgatcaagaaccttcaagtgaagatctccaacatccacgtc
cgctatgaggatgatgtcaccaaccccaattgccccttttcatttggagtgtcactgcag
aacctcagccttcagacagcagatgagaattggatgccttgtctcctggatgagaaagcc
aagctgtttttcaagcttgtccagttggacaatctctttgcttactggaatgtgaactcg
atgctgtactccaatcacatgccagatgaggccctgcgatgcctccaggacagcatcccg
gggggttccactcccatgaaccacgatttcatttttcgtccgataacggccgatgcgaag
ctgcgcatgaacccccggtcggatgtggacttctcctctccgaaggtggacctggtggtc
aacctaagagaggtggccgtggagctcaacagaccacagtacatcagcattctggagctc
ctgggatcagtggatatgatgtcacgcaacctgccctacaggaaataccggccgcaagtc
cacgtgcacaccaacgcctatctatggtggcagtatgtgatcacaggcatcatggaggtg
gacgtgaagccgcggctgcacatgtggtcgtggcagcacatccgctgccaccggcagaca
gtcaagcagtacagagagctctacaaggccaagatcactagcaagaagcccactgagaag
cagctcagggagctggaggagcctgagcggactctggatatttttaacatcactctggcc
aggcagcaagctgagatggaggcaagcaaagcggggctgcgtatcttccgtccaggggtg
aaggtggaggaggaggaatctcagggctggttgggctggatgtggtccggctggtcagga
gactgtggcgccgaggccaaggaggtcaagaccggagcttttgacgagcttatgacttct
gctgagaaggccaaactctacaccgccatcggctacagtgagatagctgtcaatcataac
ctgccaaagaactttgaggatatgaagattaatttccacatggagaggatgtctgtctca
atgaaagacaacaaggaccagaatgaaatcctcaaactcacagttgaagatctgaaatcc
atgctgacccagaggcccggagcacaagccattaagctgtcggcccagctcagtctgttt
gaggtgacaggactagctagtaaccggccggcacccacattgctgtcgtcaaggaaggct
gccacggtaacggggacgcccttgttggacatcctgtttgagaccaaccctctggacgag
agcgctgatcagcggctccgcgtcgagtcccagcctctggagatcatctatgatgctgtg
acggtaaacagcatgtctgcgttcttctcgccgcctgatgacctccagctggacgatctg
accaacgccactctcatgaagctggagcagttccgagaccgcacctccacaggactgatg
tacgtgattgagacccagaaggttctggatctgaacgtcaacctcatggcctcctacgta
atcgttccccaaaccggcttctacgactccacccagaacctcatgctattggacctgggc
cacttcaaggtgtctagtctgagcagagaggggctgccgcagctctctgtagggagaagt
actatagaggacattatgtcccgggcctacgacagcttcgacgttcagctcagcagcctt
cagttcctctacagcaaaccagatggggactggaagaaagcccgtaagctgaggcagtca
gccctccacatcctggagcctgtcgacgtcaaggtggtgttcagcagagccatggtggtc
acagattcccgcatgcccaagtttaaaatctccggggagctgcccctcctctctctgagg
atctctgatgataaggtgcggggcgtgctggagctgatcgacagcatcccgctgccagag
agcaggccggccccgcgcagcaccaacactcactcaacatccaaggctttaaagcagtcg
tacacccctcagctaacccccaggaaaccaaccatggctgaactgcgcaactccctgata
tgggaatcaggctcagaggaggacctgttctacgatgctcccagctctcctataggagac
cgtccgttcttccccgacaacatgcccagccccttgcagcgctccgactcagtcaagagg
agaggtctggtcaagaaagaccccaagaagaacatgaccgagttcctcatgacgtttgag
atcagcaaactgtccgttcagctgtgtcgtctctctggaggcgaggaggtcacagtgttg
cacctggaaatcgaggggctgggcaccgagctgaagctacgtaccttcgacatgacatcc
tacacgttcctacgagagatctgcctggagtgccccgagtacatggattcagaggagaag
aaagtgcacctgatcaccactctagacaacagagaggatgacctcctcacattggagtac
actaaggctgataagaatggaccagaattcaagtctgagtacaagaacactgaacaatca
gttaaggtgaacttctcgtctctggacatacacctgcacacggaggctctgctcaatgcc
atgaacttcctgatcagtctcctccccccgaccaaggaggtggcgcccagccaggaggag
ctgcccaccatccccgaggaggacgagggagagggggaggaaggcgagaagaaagaggga
tcggctgtggcaaaaaaaacctcttctaagaagtcaaagtttgaggatgtggtgaatttg
cacatcagagccgatctcaactgtctgaaggttttcatccgaggccagagccacaggata
gcggagatccgcatcgagggcctggtgtcggagttgctgatgaggaaaaaagcggtagag
gttctggccaacctgaagaacatagtcatcctggactgtgataaggaggcgttgtacaag
cagtgtgtgtccatagccgatgaggaggtgtttgctttccgcatggtgaaccacactgaa
gccacggagggcgacgcctatctagacatgggtaaagtggacaccagcgtcaccctgacg
gtgggctgcatccaggtcatcttcctcaacaagtttgtctcctccatcctggccttcatc
aacaacttccaggtggccaaggaggccctggctgaggtgacggtgcaggcagcagagaag
gcggccacgggggtgatggagctggctgagcgcagcacccgcatctccctggacgtggac
ttcaacgctcccgtcgtcttcctgccgcagtcgtcgtcctccgccaacgtcatcgtggcc
gacctcggtatggtcacggtcaagaaccgcttcgccatggtcccctcccaaatgcacgtc
aagatccctcccgtcatggacaccatgaccgtgggcctcagcgacctcaagatgtacaga
accacctttgaggaggggaggtttcagggggaaatccagcttctgaagccggtcaacctg
gacctgtccatccagaggaacctgtcagcctcctggtaccacagcatccccgacatagag
atcactgctcacctcaaaccaatgaacctgatcctgggtcaggatgatatgacggtggtg
ttgaggactctgagtgggaacctgtcagagacgtcagactctgcctccccccctcctcct
ctgcgtactgtggaccgctccgacacggcctctaccaaaggctcacaggcgtcaggaggt
actggtagtaaccccaccagcggcaacacggtggtaactgctgcagtggtggagacccag
aagagcaccaagctgaagagcacactcaaactggacttcaagtttgactccatgaccctg
gtcctgtacagccccaatgggactgaggtgcaggtgttggactcgagggatgagcagctg
aagctggctgagttcaccctggggactatctctacatctgtccacatgttctcagacgga
tctatgaaggcctccgtcaaactcacagactgcctgctagacgacaaaagatgcagggtc
aagaagatcactgccaggatgatggcgatgcgtccgggcgctgagaggaatgtgatggtg
gaggtgaactacaagcagggccgcgacggcacctctttggacacggtggtgcaggacgtg
tacctctgtgccagcatggagttcctgctcactgtggccgacatcttcctcaaagccagc
cagcagggcttctcctccgccacccccaagaacagcagtagcactaaacccactgcagca
gcagcctccaaggaatctgctccagtgggggtggtggcaaagtcagagattaatgttctg
gtgaagaaccctgagattgtgtttgtggccgacctgacacgtgccgacgccccggccctg
gtcatgaccacggagtgcgagctggtgatgaagagcgacctggacggtcagctgatgact
gcggtggtcaaggacctgaaggtggtggcctgccccttcctgaaggagaagaggaacaag
gagaccactgtgctgcagccctgccaagtgttcttcaagagcacacagtcctccacctcc
ccgcaggccatggaggtctgcatcaacgcactcacactcaaggtgtcgcccatcattata
aacacagtgattaccattcagtcggtgctgagcccggccggtgccgagacaccccagtct
gagctggagagccccgtgcccccagacctgtgggagcgccggtcctggagggacctcaag
ctgtggttcctggatgaggagggtaaagacgaggatgcccagtccctggtcccgctgatt
ccccagggcgagtccctgcagttggccatcaactccatctgcctgacactggaggcaggg
gtgggccaccgcaccgtccccatgctcctggccaagtcctccttccacggtgacgtcaag
aactggagcaccctcatcaacctgcacagccagctcaacctggaggttcactacttcaac
gaggtgatgggggtgtgggagccactgctagagcccctagaagacgagaaccgagatgga
ttcagaccctggaccctgggattaaagatgaagaagaagccagtgaagtacacaggtata
tcagaagaagtggactacagcatccctgactacaagaccgtcatcagcatcagcagcaag
gaccaacttaacatcaccctctccaagtgtggactgggcatgctcagtaacctgggcacg
gcctttgcagaggcggccaagcaggcatcggatagtttccagaaggacgaggctccgttc
gtcgtgaagaaccgtctaggtctgactgtgtcggtggtgcacagtgagctgttcagcccc
ctgggtcgcgaggccacggcgcgccgggtagagctgcaggacggagagagcctcaacatg
gactaccgtcacaccaccacccactcagaccagttctctgccatgacttcgttggtggcc
aaggactactacatacagcccactccggtgggccacacttcaacaggcatgatcccgttg
atcaaagtggggcgtggcatgtacagtgtcgtgcacaaagactctggggtcacccgtttc
ctggtctgtcagatctactctgtggagggaagcaagtacatcaagatccgctctcccttc
cagatcataaaccacttctccatcccattcagagtgatggagggctctaccagtctgggg
atatcactgcctacagaggagttctgtgtgcctctggactcctacaggtcagagctaaga
ctgcagccggtaaccgagggagacgatcagtacgactgctccgagggtttcagctatgag
ttggtgagcctgcagcccggtgcacgtgtgcagcagacctgtcatcgccatggtgacagc
gctggtgtcctcatggtcaacatcgtccctctgaaagacacggtgacatcacaacacaca
ggaatggccggggagcactttgacgagccctacatcctgcacctgtggccctccgtcctg
ctccggaaccttctgccttaccccatcacctatcgcctacaggacagtgaagagcccgcc
cccatcaccctgatggacggccactcggcccagctgcacaccgccatcatggaccagtcc
agcctggaactccgcctcctcgactacctgggtcaggattggcaggcccactacggtctc
tgtggcgacctggatgagatcaccttcattgtgttcagctctctgcgcgatgaagaggag
gtggtcaggttaggagaggggggagaagggaagagggcggagctcgatattgcggtgcat
gtgaagtacgacgcgggccagactgaggtggccatccattctccctactggatggtgaac
aagacgggccgcctgctgcaatacaaggccgacgacatccaccgcaaacacgccatggac
tacgatatgcctctgctcttctccttcaagccacacaactttctgcagaacaacaaggtg
cggctgatgatctcggacagcgacctgtcggatgatttctccctggataccgttggtagt
tatggtgaagtgaagtgcaaagggaggcttaaagattacgtgatcggagtgaagatcgac
gccagcagtttcagcctgacccgtatcgtaagctttgtgccatactacctgttagtgaac
aggaccaaacatgtgatctgggtgggagaggagggccaggacgactggaccgaggccaga
ccacaacaggcagccatcccgttttggcctgagagggactccaagaagctcaaagtcaaa
gtagaaggcagtcggtcaactcctcaaaccatggacttcaccaaaccggaaaactgcctg
ctgctgcatctggacaacactctgggcggggtcattatggatgtgaacctatcggaccac
tcgattatcatccgtttctctgactaccacgacggggccgcccccttcctcatcatcaac
cacacccaggagcagacggtggagttctaccagagatttcggagagattcatcagaatgg
gtggcagacgagctgctcggcctctccttctcagtagaggagacccagcccagtagtcag
aaggagaaggacaagctaagccccgggaaggcaatgtactacacctgggctgagcccact
ggatcgcgctctctggcctggcagtgtggcagctacagcggcgagctgaggagtgaagag
gacctgcggttggacgtgaacgaggagggtatgctgtacctcatctcgttctacgagggc
ctccagcgggtggcgctgttcaccgaggacagacgcatatacaagctgctgtgtgagagt
gagaaggccgagctggccgaacaggagataatcctctccctgcaagacgtgggcgtctcc
ctggtcaacaacagcagccgccaggaggtgtccttcatcggtattaccagttcagacgtg
gtgtgggagtccaagccaaagaagaagtctcgctggaaacccctgagtggaaaagatgcc
gagctgctggagacccacttcaaagagtacacagagagtggaccagtggacaacgccatc
ttagacctggagaacaacttccaggtgtctttgacccataatgggcaagacatgaggatg
atgcagccatatgacgctccaatcaggaggagcttcctgccaggtgtgaaggtggagtac
agcgtatcggcccgccagagtgcctaccgtgtccagatcaaccgcatacagatccagaat
cagctacctggagcaatcttcccatatgtcttctaccctataaaactaccaaagtctgtc
accatggactcagagcccaaacctctgaccgacatcagcattgttaccagggcagcaggg
cactctgatatctcacgcatcaagtatttcaaggtgctaatccaggagatggatctgaag
ttggacctgggcttcctttatgccatcttggacctgttcactccggagaacgccagcgtg
atgacgtcagagcagcaggtagagttgtttgagaaggacatagagtatctgaagacggag
ctcaacgacgtctcggccactgacacatcccctatcagtctctatgagtacttccacatc
tctcctatcaagctgcacctcagtttctctctgagttctggaggagaggatggtaacaag
gagaagcgggagaccgagatcatccctgtccagtccctcaatctgctgctgaaaagcatc
ggagcaaccctcactgacgtgcaggatgtcgtcttcaaattggccttcttcgagctgacc
ttccagtttcgcactcgccagcaactacaatgggaggtcatcagacactactcgaaacag
gcgataaagcagatgtatgtgctggtgttgggcttggacgtgctgggaaacccctttgga
ctgatccgaggtctgtcggagggagtggaggctttcttctacgagccctatcagggagct
atccaggggccagaggagtttgtggagggtatggcgctgggggtgaaagcgctggttgga
ggagcagtaggtggcattgcgggcgctgcctccaggatcacaggcgccatggcgaagggt
gtggctgccatgacaatggacgaggagtaccagcagaagagacgggaggctatgaacaag
cagcctagcggcctgagagagggcctgacccgcggaggcaaaggactggtgtctggcttt
gtcagtgggatcacagggattgtcaccaagcctattaaaggtgctcagaaggagggcgcg
gcgggcttctttaagggtgtgggcaaggggctagtgggtgctgtggccagacccactgga
ggcatcatcgacatggccagcagcaccttccagggcatcaagagggcagctgagacatcc
caggatgtggagagtctgcgtccgcctcgcttcatccatgaggacggggtcatccgacca
tacaaggaaagagagggcatcggcagccagatgctacagaaaattgaaaatggaaggttc
gccaagtacagatactttgcgcacgccaaagtgaacgagtccgatttcctgatgatcacc
aaaaggggaatctttttcgtgaccaaaggtacatttgggcagctgacctgcgagtggcag
tatctgttcgacgagttcaccaaggagcccatgatcgtggaggggaggcggcttcggatc
gaggccaaggagagagtgaagtctgtgtttcatgccaaagagtttgggaagataataaac
ttcagaagtccagaaatagccaagtgggttcttaccaagcttgaagacgccagggagagt
ctacacaaatactga
DBGET
integrated database retrieval system
