Oncorhynchus tshawytscha (Chinook salmon): 112263303
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Entry
112263303 CDS
T05605
Symbol
snapc4
Name
(RefSeq) snRNA-activating protein complex subunit 4 isoform X2
KO
K09453
snRNA-activating protein complex subunit 4
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
otw03000
]
112263303 (snapc4)
03021 Transcription machinery [BR:
otw03021
]
112263303 (snapc4)
Transcription factors [BR:
otw03000
]
Eukaryotic type
Helix-turn-helix
Tryptophan clusters Myb, Myb-like factors
112263303 (snapc4)
Transcription machinery [BR:
otw03021
]
Eukaryotic type
RNA polymerase III system
Other transcription-related factors
snRNA-activating protein complex (SNAPc)
112263303 (snapc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Myb_DNA-binding
Myb_DNA-bind_6
HTH_Hrp3
SLIDE
Motif
Other DBs
NCBI-GeneID:
112263303
NCBI-ProteinID:
XP_024295179
LinkDB
All DBs
Position
LG12:41131328..41153870
Genome browser
AA seq
1414 aa
AA seq
DB search
MSSDDLLAQREKVERQILVLERTLGPESNSIELSSDSCSSDDGSDDNASQPEDLGPPGDL
EAEREQIQREIEELECTLGPNASNAEILSDEDVQGSETESSKEDSAEELDLPQNTDTCLQ
MNLVYQEVLKEKLEELERLLSDNQHQQKEIMTQLSATGTPQATTSGQPTLKLFLGSFLKP
YFRDKVTCLGPPANPEAREKMSKRIGPTDDVKMKRWEGWQKTLLINAVMKDSMKRMIQPK
LSKVEYLTQKMVSSENVEKQILRKQITEIEKDIEAISALKEDELMGGRYDDHDWQKISNI
DFEGIREAEHIKSFWQNYLHPSINKASWKENEIEMLKKVALKHGHHNWDLIADKLGTNRT
AFMCLQTYQRYICTDFRRRRWGGVEDEILRELVEKMRIGNYIPYTQISYFMEGRDSCQLM
YRWTQVLDPTLKKGYWSKEEDEMLLSAVAKHGVGNWWKIRQDVPGRNDGQCRDRYVDVLV
GNVKKGPFDEKEKAQLRQLVEKYGRKWSKIAAEIPNRIDCQVLHQWRRMTGYKPRERDKS
KRALQRRRKIAAVRSIKSKLMRLDDDEHSSSDEEENVEIEFMDSDDEKKQTFIEPHWSDQ
ESDIIKDYTQPDMEQWIPVLEKEFEGLGKVRSMMVERPSKNTTQEQATTDSQDAARKVIV
VRSTILDRFGKPAATVIGQNPQILAKKDYNSDLAMLKVCYGEVRNLIAWKKTNARKHKNS
GPISGDQGTAHKSSRQKESSANSETCVTLNYSLQLAVTPWVGNVLMPPPPSSNKRREADM
VRERAESIGLTNSPVFLFFLQVLRLDAEGCKQIIKMRNNQAVHLGNKSWEAKQASLKNPK
QRHGPRTVASMLNQKGNEQQKRKQNSQLVMMIPQTFVIAPPVIQSIPHPAVPSTPTSRQQ
LMPSALTQLRPSTPSRPIPSTLGQPVLSTPSLPIPSTPGQLIPSTPNRPILPVPLSIQSS
TTVDRVNEEANENHSGKKRNRKPTEKAQALKDAAIAKKSVEESPKRKKARTKESLVVQPS
NVVMSPPQTAWVLTPIGLVPISGIGIQMTPQNLPRNALAPACPSPIIINQQVPLTLNAAA
TQASPNMTYVCPSPSTPKDPSALMVSTASSVAQGTASPSVNSLSTSITITSNTALRMTNP
VKRMRITNPVMQAVATTCPQLNAVSPVPMNTVISAPIRPQTGPPQALVLNVPPGSLPASF
PQGAIRIVQLNHPKSVPLPRNPELMQFDPNLMFMEDPAQVREWLSGKQGVALPDLGVTLP
YLPPFVSSLNTLSGLLKCKKTLAVRAMQLLPPEEKENQEEQQQVAAVRSFVAERFSHNPG
YLLLKARFLSCFTMPALLATINPVKLSKSPTPDHGDVEEEPFRNRPVEQMDSGYEQPTTL
QAPLLSTDGKGPPATSFSGITTRNKSRYLNMDTE
NT seq
4245 nt
NT seq
+upstream
nt +downstream
nt
atgtcctcggatgaccttcttgcacagagggagaaagtcgaacgccagattttggtgctc
gagcgcacccttggtcccgaaagcaactccattgaactatcttcagacagttgttcatct
gatgatggatcagacgataatgcatctcaaccagaagatttgggtcctccgggggacctg
gaggcagagcgggagcaaatacagagagagattgaagagttggagtgcactcttggccca
aatgcatctaatgctgagattctgtcagatgaggatgtccaaggaagtgaaacagaatcg
agcaaagaggacagtgctgaggagctggatctaccccagaacacagatacatgtctgcaa
atgaaccttgtttaccaggaagtgttgaaagagaaattagaggagctggagcgactgtta
tcagacaatcaacaccaacaaaaagagattatgactcagctgtctgccacaggaactccc
caggctaccacatctggacaacccacactgaagcttttcttgggtagctttctgaagccc
tatttcagagataaagtcacatgtctgggcccacctgctaatccagaagccagagagaag
atgagtaaaaggattggacctactgacgacgtcaagatgaaaagatgggaaggctggcag
aagactctgctgataaatgctgtcatgaaagacagcatgaaacgcatgatacagcccaag
ctgtccaaggtggaataccttacacagaaaatggtcagctctgaaaatgtggaaaagcaa
atcctgcggaaacaaatcactgaaattgaaaaggacatcgaggccatcagtgcactgaag
gaggatgagctgatgggtggccgctatgatgaccatgattggcaaaagatttccaatatt
gattttgaaggcatccgtgaagctgaacacataaaaagcttttggcagaactacctgcat
ccctccattaacaaagccagttggaaggaaaacgaaattgagatgctcaagaaagtcgct
ttaaaacatgggcaccacaactgggatctgattgctgataaacttgggaccaacaggaca
gccttcatgtgtctccagacgtaccagcgctacatctgtaccgacttcaggaggaggagg
tggggcggcgtggaggatgagatccttcgagagctggtggagaagatgcgtatcgggaac
tacatcccgtacacccagatctcctatttcatggagggccgggattcatgccagctgatg
tatcggtggactcaggttctggaccccaccctcaaaaaaggctattggtctaaagaagaa
gatgagatgctactgagcgcagtggctaaacacggggtggggaactggtggaagatccgt
caggatgtgcctggcagaaatgatggccagtgtcgggacaggtacgtggacgtcctggtt
gggaacgtgaagaaggggccctttgacgagaaggaaaaggcacagctcagacaattggtg
gagaaatatggacgtaaatggtctaagatagctgccgagattcccaacagaattgactgc
caggtccttcatcagtggaggagaatgaccgggtacaagcccagagagagggacaaaagt
aaaagagcattgcagcgaaggagaaagatcgcggctgtgagaagcatcaagagtaagctg
atgaggctagacgatgatgagcactcaagctccgacgaggaggagaacgtcgagattgag
tttatggacagtgacgacgagaagaaacagacgttcattgaaccgcactggtctgatcag
gaaagtgacattatcaaagactacacccaaccagacatggagcaatggatccctgtgcta
gagaaggagtttgaagggctggggaaggtgaggagcatgatggttgaacggcccagcaag
aacacaacgcaagagcaggcaacgacggacagccaggatgcggcacgcaaggtcatagtg
gtacgttccactatcttggaccgcttcggcaagcctgctgccactgtcatcggacaaaac
ccccagatcctagcaaagaaggattacaacagtgacctggccatgctgaaggtatgctac
ggagaggtgagaaacctgattgcttggaagaaaaccaatgccagaaaacacaaaaacagt
gggcctatcagcggtgaccaggggacagcccacaagtcctcaagacaaaaggagtcctct
gccaacagtgaaacctgcgtcactctcaactattcccttcagttagcagtcactccctgg
gtgggcaatgtgcttatgcccccaccaccctcttcaaacaagcgccgtgaagcggacatg
gtgcgagagagagcagagagcattggactcaccaatagcccagtgttcttgttctttctg
caggtcctccgtttagatgcagaaggctgtaagcagatcattaaaatgcgtaacaaccaa
gctgtacacctgggaaacaaatcttgggaagcgaaacaggcttcattgaaaaacccaaag
caacgccatggtcccagaacagtggccagtatgctaaaccagaagggaaacgagcagcag
aagaggaagcagaacagtcaacttgtgatgatgatccctcagacctttgtcattgcaccg
cctgtaatacagtccatcccacatcctgcggtcccctccactccaacttccagacaacaa
ctcatgccttccgcacttacccaactcagaccctctacccccagccgacctataccctcc
acccttggtcaacctgtactctctacccccagcctacccataccctccacacctggtcag
cttataccctcgacccccaaccgacctatactccctgttcccctttccatccaatcctca
actacagtagaccgggtgaatgaggaggctaatgagaatcattcagggaaaaaacgcaat
cggaaacctactgagaaagcacaggccctcaaggatgctgcgattgctaaaaagtcagtg
gaagagtcacccaaacgcaagaaagcccgtaccaaagagagcctagttgtccagccttct
aacgtggttatgtcccctccacaaactgcttgggtcctgacgcccattggacttgtgcca
atcagtggcattggcatccagatgacacctcagaatctaccacgaaatgctcttgcacct
gcttgtccatctcctattattatcaaccagcaagtccctctaacactaaatgctgctgca
acacaagcctctcccaatatgacctatgtctgcccatctccctctacccctaaagaccca
tctgccctaatggtatctactgcctcatctgtagcacagggaactgcctccccatctgta
aactctctctccacctccattaccatcacaagcaacactgctctaagaatgaccaaccca
gtaaaacgcatgagaataactaacccagtcatgcaggctgtggcaaccacttgtcctcag
ctcaatgcagtttcacctgttcccatgaacacggtcatctcggctcccatcagaccgcag
actggccctccacaggctttagtcctcaacgtccctccaggctcccttccagcctcattc
ccacagggagccatccgaatcgtgcagcttaaccaccctaaaagtgtccctctaccccgc
aatccggagctaatgcagtttgatcccaacctgatgttcatggaggacccggcacaagtg
agagagtggttgagcggcaagcaaggagttgcgcttccggatttgggcgtcactctgccc
tacttacccccttttgtcagcagtcttaataccctatcgggtctcctgaaatgtaaaaag
acattggcagttcgtgcaatgcagctcctacccccagaggagaaagagaaccaggaagaa
cagcagcaggtagctgcagtgcggagctttgtggcagagcgcttcagccataacccaggc
tacctgctcctgaaggctcgcttcttgtcctgtttcaccatgcctgctcttttggctact
atcaatccggtgaaactctccaagtcccccaccccggaccacggtgatgtggaggaggaa
cctttcaggaaccgtccagtggaacagatggattccgggtatgaacagccaacaacactc
caggcccctctgctaagcacagacggaaaaggacctcctgctacctccttctctggaatc
accacaagaaataaaagtcgctacctcaacatggacacagagtaa
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