Oncorhynchus tshawytscha (Chinook salmon): 112263380
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Entry
112263380 CDS
T05605
Symbol
vcana
Name
(RefSeq) versican core protein isoform X2
KO
K06793
versican core protein
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04514
Cell adhesion molecules
otw04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
112263380 (vcana)
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
112263380 (vcana)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
otw00535
]
112263380 (vcana)
00536 Glycosaminoglycan binding proteins [BR:
otw00536
]
112263380 (vcana)
04091 Lectins [BR:
otw04091
]
112263380 (vcana)
Proteoglycans [BR:
otw00535
]
Extracellular matrix (ECM) proteoglycans
Aggrecan / versican family
112263380 (vcana)
Glycosaminoglycan binding proteins [BR:
otw00536
]
Hyaluronan
Extracellular matrix or blood plasma proteins
112263380 (vcana)
Lectins [BR:
otw04091
]
C-Type lectins
Lecticans
112263380 (vcana)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Lectin_C
EGF
EGF_TEN
Sushi
hEGF
EGF_2
Motif
Other DBs
NCBI-GeneID:
112263380
NCBI-ProteinID:
XP_024295312
LinkDB
All DBs
Position
LG12:complement(43914770..43975121)
Genome browser
AA seq
2596 aa
AA seq
DB search
MFTKESVTAKFYSVYSTDKTEHVTSMTRDSSLFSTEQPGKVLTIKSHKVAIYDTARTATT
SVSSLYSTDKPSIASISDLTSTDEERSGDQTPDMFTKYSVTTVSSLDSTKKPTTTSHETS
TEESEKTATTTGTSMFSTDKPTQILTTAETAGSAPTSPSSLCSTEKTSVDSISDLTSKDE
EHFGDLTIDMFTQESVTATVTSIYSTDKAEQVTTTAPPFVMTTGESEVTEKTSGSEQLVT
TATFTPSTLPYIDKVLDYLPSPVQTTTKPEGEATIFRVLPNTETSLVVSSTDEESSGDQT
HDMFTKESVTATLSSLVSTVKTEQVMTTPMSTIMQASQTSISPHSDYATPKTTGVDDISK
RMAFTTKQQPSTERDTFSEATGQTESIVSSTPGPDEEGHISPDTETTIFPEATQPPVTVT
GSDRTTMSDHTTHQFPTTKRDHTTMRVHTMSDHLTTGDHTVARDHTTVRDHTTVPFGSQS
PISTAIPSIIYQGVTDQQVMIITSTSSQTKTNQTPTMVLRGTKPATSPVIIFTEEAIDED
ELFSTVVDSMTTTPEIITKDDTIIDADTVTMVDPSSQFHPTIFAEEAGGVTDLTMTPHSS
IAMTEEPEGSGPDYYLSSTIDPPSLATTHIPSVTSVNISEEASAETTSSSTKVEGSETVI
TTTTSSVEYVEASSSEVMSTVAQTTQATTVFTESSSQTAFTTSYIFVNEFSRDGVTEEQS
NTETTPSAPVSSHASTHPIDASTQTTVSSEDDESLTDEMELSTTPSPTTIESAGEGPSDE
DSEVENTTTLSSSKQATVVSLTATQQTSVSTEEDRETVKSTRPLPVDEFSGDDNSEGSGT
SASVEETSQTTTPTPDTSSTATEKGEVTEVTTPAPSFSEEGISGEEMTTWTPKLSETTSS
LYSTDKSSVASTSNLTSTDEERSSDQTPDMFTKDSVTTVSSLDSTKKPTTASQETATAES
EKTATATVSSLFSTEKPLQVTTNSHETVTDETTRTATTSASSLYSAEKPSVVSISEITSM
HEESTDDLTPETFSKESVTVSEQITATTTVSSLFSTEKPGQVITSSNETVTDETARTAIT
SASSLYSTEKHSVASISDIAPADEESSGELTPDMFAKESATTTVSPFDSTVKLEQVTATT
MSPEKSIAESEKTTSTTVSSLFSTENTEKAYSQLSLSVHSTVEPSVMPDVVVQFVTTFVP
EVDMTMSGKSFHQARSEIEFTQHPLTDISSEKTAEATTSPMLLEVDSRDSIDTVTTPAQG
SESPFVATASTAIPFKSEVESSSQGLTTERVSTDTEVSSEQDSEVNRTCTPTSISIKEEA
TGYIVTSLVTDIATAVYSTPASAVVTSALPDIEEEADHENIPDLSQVESEPALQTTTKPE
GEPTAVSTASDTSSVLTSIDEEISGDQKPAMFTKKYATTTTTVISLFSSEKLTTLLQDSV
TTETEGTYQTEGPAITPVIDEAETSPVLHVMTTAKSPDASAAIDQTTKASDSEESFTPGV
DDTETGSVEGATPMTTQESLETEAHVHSSTAKPLQTSTSPVSEYASALTSAKITGESEET
EQTESTSTEQPSDIPSSMKSTVISVLPDTHEESSGDQTPDMFTKESVTTLASLLYSTGKP
TISSHATVTAETEVTEETERPSGSKQPSSTPVIDETETSPVLSSTDKSSSGDQTPAMSTK
ESATEQVTTTAMPHVMTTRADSEKMATTKVSSLYSTEKPDSMSDLASAEITAESEETKQT
ESTSIEQPPGVSSSMENTVSSVLSDTDEESSGDQTPHMFTKDSPTTTVSSMYSTEKATTS
SQESVTAESEVTEQTERPAGSDKPSVIDDTESNSVLPSADDKSSGDQTSESFTTDGFAPE
APLLASTAPPIVSVHSTKVTTEANVMIQFVATFSPKPDLTTPEALLQEGLSEIAFTHRSQ
PDIFSEETAMPTTRPMLPEEDSSQSVDTLTTPAQSSESNCVSTASPVKTGAVPSTSEEEE
QVEASSQVPTTEDASPGSEGSSEQEAEVKETDISAIGSPLTEKVLETKVYRTPTTDVDEE
VDYESITEPLQVESKPSLIETTTTPEVEATTLSSVPTEAQKIERASSSSESSSSSSSEEV
SNPSVTQSALTSSSSESSSGSGLEKKVTIVSPVKPESDTAEETTPSLSVTQAELATAITD
SPSLTHPRAEIESAGSESSPEGKTASEVVTPATKMPMWEMPEYTTVSPAETQSQTESVSM
IQSTPSSVSEEEESVDYDNVSGPTLVEGEPPIKVVETITSAETGMDLGQMTVVEIAGIHS
CTENICLNGGSCYRSGRFQSCSCAPGYSGDRCETDIDECQSNPCRNGGTCIDGLNSFTCV
CLPSYAGLYCDEDTQACDYGWHKFQGHCYKYIPQRRNWDTAEKECRVQGAHLTSILSHDE
QQFVNRLGQDYQWIGLNDKMYDNDFRWTDSMPMQYENWRPNQPDSFFSSGEDCVVMIWHE
DGQWNDVPCNYHLTFTCKKGTVACNQPPLVQNAQTFGRKRSRYEINALVRYQCKGGFIQR
HVPTIRCRGDGRWDIPKIACMSPSNSQRAFSRRHQNYSLFSSNNYKWRSDEAEARHRPHH
RGRRLRRSVNRRNRRQ
NT seq
7791 nt
NT seq
+upstream
nt +downstream
nt
atgtttaccaaagagtctgtcactgcaaaattctattctgtatacagcacagacaaaaca
gaacatgtcacatccatgactagagattcttctctgttcagcactgagcaaccaggaaaa
gtattgacaataaagtcacataaagttgcaatatatgatactgcaaggactgctacaact
tctgtttcttctctatacagcacagataaaccatcaattgcttccatttcagatttaacc
tccacagatgaagaacgctctggtgaccagacccctgatatgtttaccaaatactctgta
actacagtttcttctctggatagcactaagaaacctaccaccacgtcacatgaaacttca
acagaagagagtgaaaagactgctacaactacaggaacttccatgttcagcactgacaag
ccaacacaaatactgaccacagctgagactgcaggatctgctccaacttcaccttcttct
ctgtgtagcactgaaaaaacatcagttgattccatttcagatttaacctccaaggatgaa
gagcactttggtgaccttaccattgatatgtttacgcaagagtctgtcactgcaactgtt
acttcaatatacagcactgacaaagcagaacaagtgacaaccacagcaccgccatttgta
atgaccacaggagagagcgaagttacagagaaaacatcaggctcagaacaacttgttact
accgccactttcacaccatccactttgccatatattgacaaagtgttggactatttacct
tcacctgttcaaactaccacaaaacctgagggagaagctaccatattcagagttctccct
aacacagagacaagcttagtagtctcctctacagatgaagaaagctcaggtgaccagacc
catgatatgtttaccaaagagtctgtcactgcaacattgtcctctcttgtcagtactgtc
aagacagaacaagtcatgaccacaccaatgtcaacaataatgcaagcttctcagacttcc
atatcacctcactctgactacgccactcccaagacaacgggtgtcgatgacatatcaaaa
cggatggcgttcacaaccaaacaacaaccgtcaactgagagagacacattcagcgaggca
acaggtcaaacagaatccattgtgtcaagcacaccaggcccagatgaggaaggtcatatc
agccctgacacagaaaccaccatctttcctgaggctacacagccccctgttactgttact
gggagtgatcgtacaactatgagtgaccatacaacacaccaattccctacaaccaaaaga
gaccatactacaatgagagtccatacaatgagtgatcatttaaccactggagaccacact
gtagcaagggaccacaccactgtcagagaccatacaacagtgccttttggttcacagtca
cccatatccactgccatcccctctattatctatcagggtgtcactgaccagcaggttatg
atcatcacctcaaccagcagccaaaccaaaactaaccagacccccaccatggtgctgcgt
ggtacaaaaccagcaacaagcccagttatcatatttacagaagaggccatagatgaggac
gaactgttctctactgttgtggacagcatgaccacaacccctgagattatcactaaagat
gacacaataattgatgctgatactgtgacaatggtggacccctcctcacaattccacccc
accatatttgcagaggaagcagggggagtaacagaccttaccatgacaccacactcctca
attgcaatgacagaggaacctgaagggtctgggcccgattactacttgtcttccacaatt
gacccaccgagtctggctacaacacatattccgtcagtcacctccgtaaatatatctgaa
gaggcaagtgctgagacgacaagcagctctacaaaagttgaaggttcagagactgtaata
acaaccaccacatcatctgtagagtatgttgaggcatctagttcagaggtcatgtccact
gtagctcaaaccactcaagccacaactgttttcacagagtccagctctcagacggccttc
accacatcatatatatttgttaatgagttttccagagatggtgtcacggaagagcagtcc
aatacagagactactccttctgcccctgtatcatcccatgcatcaactcaccccatagat
gcaagcacacagaccacagttagcagtgaggatgatgaatccctgacagatgagatggaa
ttatccaccaccccttctcctactactattgaatctgcaggagaaggcccttctgatgag
gattctgaagtggagaacacaacaactttatctagttccaagcaagccaccgtggtgtct
ttgactgctacacaacagacgtcagtgtcaactgaggaagacagagagactgtgaaatca
acccgtccactgcctgttgatgagttttctggagatgacaattctgaaggctctggaacc
tccgcctctgtagaggagacctcccaaaccacaactcccaccccagacacgagctcaaca
gctactgagaagggtgaagtgacagaggttacaactccagcaccttcattctcagaggag
ggcatctctggggaggaaatgacaacttggacacccaaactctctgaaaccacatcctct
ctgtatagcacagataaatcatcagttgcttccacttccaatttaacctccacagatgaa
gaacgctctagtgaccagacccctgatatgtttaccaaagactctgtgactacagtttct
tccctggatagcactaagaaacctactacagcgtcacaggagactgcaacagcagagagt
gaaaagactgctacagctacagtttcttctctctttagcactgagaaaccattacaagta
acaacaaactcacatgaaactgtaacagatgagactacaaggactgctacgacttccgct
tcttctctgtatagcgcagagaaaccatcagttgtgtccatttcagaaataacctccatg
catgaagagagcactgatgacctgacccctgaaacgttttccaaagagtctgttactgta
agtgaacaaattacagccacaactacagtttcttctctgtttagcactgagaaaccagga
caagtaataacatcgtcaaatgaaactgtgacagatgagactgcaaggactgctataact
tcagcttcttctctctacagcactgagaaacattcagttgcttccatttcggatatagcc
cccgcagatgaagagagctcaggtgagctgacccctgatatgtttgccaaagagtctgca
actaccacagtttctccatttgacagtactgtcaaattggagcaggtaacagccacaaca
atgtcacctgaaaaatcaatagcagagagtgaaaagactacatctaccacagtgtcgtct
ctgtttagcactgagaacacagagaaagcttactcccagctgagtttgtctgtccattcc
actgttgagccatctgtaatgcccgatgtggtggtccagtttgtcacaacctttgtcccc
gaggtggacatgacaatgtctgggaaatctttccatcaggccaggtctgagattgaattt
acccaacatcctctcactgacatctcatctgaaaaaactgcagaggccaccacgagtccc
atgttgcttgaggtagattcaagggactccattgacactgtaaccacacctgcacagggc
tcagaatcaccttttgttgccacagcttctacagcaataccatttaaatcagaagttgaa
tcttcaagccagggacttacaacagagagagtttctactgatacagaggtcagctcagaa
caggacagtgaggtcaacaggacttgcactcccaccagtatctctataaaggaggaagcg
accgggtatattgttacttctctagtcacggacattgccactgcagtgtacagtacacct
gcttccgctgtggtcacatctgctttgccagacattgaggaagaggcggaccatgaaaat
attccagatctgtcacaggttgaatctgaacctgctcttcaaacaaccacaaaaccagag
ggagaacctacagctgtcagcactgcctctgacacaagttcagtcctcacttccatcgat
gaagagatctcaggtgatcagaaacctgccatgtttaccaaaaagtatgcaactacaaca
actacagttatttctctgtttagctcagagaaactcacaacattattacaggattcggta
acaacagagactgaaggcacataccaaaccgagggaccagcaattactcctgttattgat
gaggcagagacgagcccagtcctacatgtaatgacaacagcaaaatcaccagatgcgagt
gctgctattgatcagaccacaaaagcatcagactctgaggagtcttttactccaggtgtt
gatgacacagaaacaggttcagtagaaggggcaactccaatgaccacccaggagtctctt
gaaacagaagctcatgtgcacagtagcacagccaagccattgcagacatccacatcacca
gtctctgaatatgcgagtgccctcacctctgctaaaataactggtgagagtgaagaaaca
gaacagacagaatcaaccagcacagaacagccatcagacattcccagttcaatgaaaagc
actgtgatctcagtcctacctgatacacatgaggagagttcaggtgaccagactcctgat
atgtttaccaaagagtcggtcacaactttagcttcattgctgtatagcactgggaaacct
actatatcttcacatgcaactgtaacagcagagactgaagtcacagaagaaacagagagg
ccatcgggctcaaaacagccgtcatctactcctgttattgatgagacggagacaagccca
gtcctctcctctacagacaaaagtagttcaggtgatcaaaccccagctatgtctaccaaa
gagtctgccactgaacaagtgacaaccacagcaatgccacacgtaatgaccacaagagca
gatagtgaaaagatggcaactacaaaagtgtcttctctgtacagcacagagaaacccgac
tcaatgagtgacctcgcctctgctgaaataactgctgaaagtgaagaaactaaacagacg
gaatcaacaagcatagaacagccaccgggtgtttccagttcaatggaaaacactgtgagc
tcagtcctatctgatacagatgaggagagctcaggtgaccagactcctcatatgtttacc
aaagactcaccaactactacagtttcttctatgtatagcactgagaaagctacaacatct
tcacaggaatctgtaacagcagagagtgaagtcactgagcaaacagagagaccagcaggc
tctgacaaaccgtcagttattgatgatactgaaagcaactccgtcttaccttctgcagat
gacaagagctcaggggaccagacaagtgagagtttcaccacagatggttttgcaccagaa
gctcctctcctggctagtacagcccctccaattgtctctgtccattccactaaggtgaca
acggaggccaatgtgatgatccagtttgtcgcaacattttcccccaaaccagacttgaca
acacctgaggctttgctccaagagggcctgtctgagattgcatttacccatcgttcccaa
ccggacatattttctgaggaaacggcaatgcccacaaccagacccatgctgcctgaggaa
gattcaagccagtctgttgacactttaacaacacccgctcagagctctgaatcaaattgt
gtctccactgcctctccagtgaagactggtgctgtaccatctacatcagaggaagaggaa
caggttgaagcttcaagccaggtacctacaacagaggatgcttctcctggttcagagggc
agctccgaacaagaggccgaggtcaaagaaacagacatttctgccattggctctcctcta
accgagaaagtgttagaaactaaagtgtatagaacacccacgacagacgttgatgaagaa
gtggactatgagagtattacagagcccttacaggttgagtcaaaaccttccctcattgaa
accaccacaacacctgaggtagaagcgaccacgctcagcagtgtcccaacggaggctcag
aagattgagcgtgcgtcatcaagttcagagagcagttcatcgagcagctcggaggaagtg
tcaaacccgtctgtgactcagtcagcattgacctcctccagctctgaaagcagctcagga
agcggcttggagaaaaaggtgaccatagtttcccctgtgaagccggagagtgacacagca
gaggagaccaccccatccctctctgttactcaggcagaacttgcaaccgccatcactgat
tcaccctctctcacgcatcctagggctgaaattgagtcagcgggttctgagagcagtccc
gaaggaaagacggcttctgaagttgttactcctgccactaagatgccaatgtgggaaatg
ccagagtacacaactgtatcgccagctgaaacacagagccagacagaatcggtctctatg
atccaaagcactccttcatctgtgtctgaggaggaggaaagtgtggactatgataatgta
tcaggacctacattagtcgagggtgaaccccccatcaaggtagtggaaactatcacttca
gctgagactggaatggatttgggccagatgactgttgttgagattgcaggcatccactcc
tgcactgagaacatttgtctgaacgggggctcttgttacagaagcggacgtttccaatct
tgcagctgtgcccctggctacagtggggatcgttgtgaaacagacattgatgaatgtcaa
tccaacccctgtcgcaatggaggtacctgcattgacggcctgaattccttcacctgtgtt
tgcctcccaagctatgctggattgtattgtgatgaagacactcaggcgtgtgactacggc
tggcataagttccagggacactgctacaagtacatcccccagaggaggaactgggataca
gcggagaaggagtgtcgggtacagggggcacacctcaccagcattctctcccatgatgag
cagcagtttgtcaaccgtcttggacaggactaccaatggatcggcctgaacgataagatg
tacgataatgacttccgctggaccgacagcatgcccatgcaatacgaaaactggcgcccc
aaccagccggacagtttcttctcatctggagaggactgtgtggtgatgatctggcacgag
gacggccagtggaacgatgtgccctgtaattatcacctcaccttcacctgcaagaaaggc
acagtggcctgtaatcagccccctctggtgcagaatgctcagaccttcggcaggaagagg
tcacgctatgagatcaatgctctggtgaggtatcagtgtaagggcggcttcatccagagg
catgtgccaaccatccgttgccgtggagatggccgatgggacatccccaaaattgcttgc
atgagtccatcaaactcccaacgggcattctcaaggaggcaccagaactacagcctgttc
agcagtaataactacaagtggcggtccgatgaggcagaggcccgacaccgtcctcaccat
cgaggaaggagattgaggagatcagtgaacaggcgaaacagaagacagtga
DBGET
integrated database retrieval system
