Oncorhynchus tshawytscha (Chinook salmon): 112263410
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Entry
112263410 CDS
T05605
Name
(RefSeq) glutamate receptor ionotropic, delta-2 isoform X1
KO
K05207
glutamate receptor delta-2 subunit
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04080
Neuroactive ligand-receptor interaction
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
112263410
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
otw04040
]
112263410
Ion channels [BR:
otw04040
]
Ligand-gated channels
Glutamate (ionotropic)
112263410
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SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
ANF_receptor
Lig_chan
Lig_chan-Glu_bd
SBP_bac_3
DUF6724
Motif
Other DBs
NCBI-GeneID:
112263410
NCBI-ProteinID:
XP_024295354
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All DBs
Position
LG12:complement(46304444..46847419)
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AA seq
1010 aa
AA seq
DB search
MKVVSAVLFLAIFWSQEWEPVNSDSIIHIGAIFDESARKDDEVFRMAVADLNLNNEILET
EKITISVEFVDGNNPFQAVQEACELMNRGILALVSSIGCMSAGSLQSLADAMHIPHLFIQ
RATAGTPRSSCPLITTRTRQDDYTLFVRPPVYLNDVILQVVSEYSWQKFIIFYDQEYDIR
GIQDFLDKTSQQGMDVSLQKVESNINMMITSMFRTMRVEELHRYRDTLRRAVLFMSPATA
KAFITEVVETNLVAFDCHWIIINEEISDQDVQELVMKSIGRLTLIRQTFPLPQNTSQRCV
KHNHRINTSLCDPKDPKAQTLEITNRYIYDTVLLLANTFHRKLEDRKWHSMASLTCIRKN
SKPWQGGRPMLDNVKKSGVSGLTGFLEFTDNGTNPNIYFEILGTNYGEDRGRGVIKLATW
DPVHGLNGTLTDRKLENNMRGVVLRVVTVLEEPFVMVSENVLGKPKKYQGYSIDVLDALS
NYLGFKYEIYVAPDHKYGSQQADGVWNGLIGELVAKRADMGLSALTITPERESVVDFTTR
YMDYSVGVLLRKAERTVDMFACLAPFDLSLWACIAGTVLLVGILVYLLNWLNPPRLPMGS
VSSTTLYNSMWFVYGSFVQQGGEVPYTTLATRMMMGVWWLFALIVLSSYTANLAAFLTIS
RIENSIQSLQDLSKQTELPYGTVLDSAVYEQVRSKAMNPFERDPMYSQMWRMINRTGGAD
NNVEESKEGIRKVKYGHFAFVWDVAVLEYVGINDEDCSFYTVGNKAPDRGYGIALQHGSP
YRDIFSQRILELQQNGDMDILKLKWWPRDSPCDLYSAVHTKHRGSALDIHSFAGVFCVLA
AGVVLSCLIAMVETWWTRRKGSRVPSKEDDKEIDLEHLHRRVNSLCTEDDSPHKQFSTSS
IDLTPLDMDSMPANRQALEQISDFRNTHITTTTFIPEQIQTLSRSLSAKAQQGFAFGPVQ
DHRTGGPFRQRAPNGGFFRSPIKTMSSIPYQPTPQPNFGYGNDPDRGTSI
NT seq
3033 nt
NT seq
+upstream
nt +downstream
nt
atgaaagttgtttcagcagtgttgttccttgccatattttggagtcaggagtgggagccc
gtgaattctgattcaatcatacacatcggggccatctttgacgagtctgccaggaaggat
gacgaggtgttccgcatggccgtggcggacctcaacctcaacaacgagatcctggagacg
gagaagatcaccatctccgtggagtttgtggatgggaacaaccctttccaggcggtccag
gaagcctgtgagttgatgaacagggggatcctggcgctggtcagctctatcggttgtatg
tcggcgggctcccttcagtctctggcggacgcgatgcacatcccgcacctcttcatccag
cgtgccactgccgggacccctcgctccagctgccccctcatcaccacccgcacccgccag
gatgactacaccctcttcgtgcgcccgcccgtctacctcaatgatgtcatcctccaagtg
gtcagcgagtacagctggcagaagttcatcatcttctacgaccaggaatacgatatccgc
gggatccaggacttcctggacaagacgtctcagcaaggcatggacgtgtcgcttcagaag
gtggagtccaacatcaacatgatgattaccagcatgttccggaccatgagggtggaggag
ctccaccgctaccgggacacgctgcgccgggccgtgctcttcatgagccccgccaccgcc
aaggccttcatcactgaggttgtggagacgaacctcgtggcattcgactgccactggatc
atcatcaatgaggagatctcagaccaggacgtccaggagctggttatgaagtctatcggg
cgtctgactctgatcaggcagaccttccccctgccccagaacaccagccagcgctgtgtc
aagcacaaccaccgcatcaacacctccctctgtgaccccaaagaccccaaggctcagaca
ctggagataaccaaccgctacatctacgacacggtgctgctattggccaacaccttccac
aggaaactggaggacaggaagtggcacagcatggccagcctcacctgcatccgcaagaac
tccaagccctggcaaggagggcgccccatgctagacaacgtcaaaaagtctggagtgagt
ggtctgaccggcttcctggagtttaccgacaacggaaccaaccccaacatctactttgag
atcctggggaccaattatggcgaggacagggggaggggtgtcatcaagctggccacctgg
gatccagtgcatggcctcaatggaacactaactgacaggaagttggagaacaacatgaga
ggtgtggttctgcgcgtggtcactgtgctggaggagccttttgtgatggtgtcagagaat
gtccttgggaagccaaagaagtaccaaggctattccatcgacgtgctggatgctctctcc
aactacctgggcttcaagtacgagatctacgtggcccctgaccataagtatgggagccaa
caggctgacggggtctggaacggactaatcggagagttggttgccaagcgtgctgacatg
ggtctctcggctctcaccatcacaccagagcgggagagtgtggtggactttaccacgcgc
tacatggactactcggtgggcgtgctgctcaggaaggctgaacgcaccgtggacatgttc
gcctgcctggcgccctttgacctgtcgctatgggcatgcatcgcgggcacggtgctacta
gtgggcatactggtctacctgctcaattggctcaacccgccgcgcctgcccatgggctcc
gtctcctccaccaccctctacaactccatgtggtttgtctacggatcattcgtccagcag
ggtggtgaggttccgtataccaccctggccacgaggatgatgatgggggtatggtggctc
ttcgctttgatcgtactctcctcctacacagccaacctggctgccttcctcaccatcagc
cgtatcgagaactccatccagtctctccaggacctgtccaagcagacagagttgccctac
gggacggtgttggactcggctgtgtacgagcaggtgcgcagtaaggccatgaaccccttt
gaaagggaccccatgtactcccagatgtggcgtatgatcaaccgcaccggaggggctgac
aacaacgtggaggagtccaaggagggcatccgcaaggtgaagtacggccattttgccttt
gtgtgggatgtggcagtgctggagtatgtgggcatcaacgatgaggactgctccttctac
actgtggggaacaaggcaccagaccggggatatggcatcgccctgcagcacggcagtcca
tacagggacatcttctcccagaggatcctggagctgcagcagaacggggacatggacatc
ctgaagctgaagtggtggccccgggacagcccgtgtgacctgtactctgcggtgcacacc
aaacaccgcggcagcgccctggacatccacagctttgccggcgtgttctgcgtgctggcg
gcgggtgtggtgctctcctgtctcatcgccatggtggagacctggtggacaaggaggaag
ggctcacgagtcccctccaaagaggatgataaggagatcgacctggaacaccttcaccgc
cgggttaacagcctgtgcacagaggacgacagcccccacaaacagttctccacctcctcc
attgacctgacgccactggacatggactctatgccggccaaccggcaggccctggagcag
atcagcgacttccgaaacacgcacatcaccactaccaccttcatccccgagcagatccag
accctcagccgcagcctgtctgccaaggcccaacagggcttcgcctttggtcccgtgcag
gaccaccggactggggggcccttcaggcagagagcccccaacggaggcttcttccgcagc
cctatcaagactatgtcctccataccctaccagcccactccccagcccaacttcggctac
ggcaacgacccagaccggggcacgtccatatga
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