Oncorhynchus tshawytscha (Chinook salmon): 112263419
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Entry
112263419 CDS
T05605
Symbol
smc3
Name
(RefSeq) LOW QUALITY PROTEIN: structural maintenance of chromosomes protein 3
KO
K06669
structural maintenance of chromosome 3 (chondroitin sulfate proteoglycan 6)
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04110
Cell cycle
otw04114
Oocyte meiosis
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
112263419 (smc3)
04114 Oocyte meiosis
112263419 (smc3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
otw03036
]
112263419 (smc3)
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
otw00535
]
112263419 (smc3)
Chromosome and associated proteins [BR:
otw03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Cohesin complex
112263419 (smc3)
Meiosis-specific proteins
Cohesin complex and associated proteins
112263419 (smc3)
Proteoglycans [BR:
otw00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
112263419 (smc3)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SMC_N
SMC_hinge
AAA_23
AAA_15
AAA_21
AAA_29
OmpH
MFD_D3
Motif
Other DBs
NCBI-GeneID:
112263419
NCBI-ProteinID:
XP_042160445
LinkDB
All DBs
Position
LG02:complement(73742763..73767603)
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AA seq
1217 aa
AA seq
DB search
MYIKQVIIQGFRSYRDQTVVDPFSPKSNVIVGRNGSGKSNFFYAIQFVLSDEFSHLRPEQ
RLALLHEGTGPRVISAFVEIIFDNSDNRLPIDKEEVSLRRVIGAKKDQYFLDKKMVTKND
VMNLLESAGFSRSNPYYIVKQGKINQMATAPDSQRLKLLREVAGTRVYDERKEESISLMK
ETEGKREKINELLKYIEERLQTLEDEKEELAQYQKWDKMRRALEYTIYNQELNETRAKLD
ELSSKRETCGDKSRHLRDAQQDARDKVEETERVVREKKSKISAMKEEKEQLSSERQEQIK
QRTKLELKSKDLQEELAGNSEQKKRLLKERQKLLEKIEEKQKELQETEPKFNTVKEREER
GIARLAQATQERTDLYAKQGRGSQFTSKEERDKWIKKELKSLDQAINDKKRQIAAIHKDL
EDTETNKEKNLEQYSKLDQDLNEVKTRVEELDKKYYEVKNKKDELQSERNYLWREENAEQ
QALAAKREELEKKQQLLRAATGKAILNGIDSINKVLEHFRRKGINQHVINGYHGIVMNNF
ECEPAFYTCVEVTAGTRLFYHIVETDEVSTKILTEFNKMNLPGEVTFLPLSKLDVRDTAY
PETNDAIPMISKLRYSQQFDKAFKHVFGKTLICRSMEVSTQLARAFTMDCITLEGDQVSH
RGALTGGYYDTRKSRLELQKDMRKAEEELGELEAKLNENLRRNIERINNEIDQLMNQMQQ
IETQQRKFKASRDSILSEMKMLKEKRQQSEKTFMPKQRSLQSLEASLHAMESTRESLKAE
LGTDLLSQLSLEDQRRVDDLNDEIRQLQQDNRQLLNERIKLEGIMTRVETYLNENLRKRL
DQVEQELNELRETEGGTMLTATSSELEGINKRIKDTLARSEDLDVLIDKAEIEVKDHAKS
MDRWKNVXKEQNDAINHDTKELEKMTNRQGMLLKKKEECMKKIRELGSLPQEAFEKYQTL
TLKQLFRKLEQCNTELKKYSHVNKKALDQFVNFSEQKEKLIKRQDELERGHKSIMELMNV
LELRKYEAIQLTFKQVSKNFSEVFQKLVPGGKATLVMKKGDTEGGQSQDEGEGGTDSEKG
SGSQSSVPSVDQFTGVGIRVSFTGKQGEMREMQQLSGGQKSLVALALIFAIQKCDPAPFY
LFDEIDQALDAQHRKAVSDMIVELAGHAQFITTTFRPELLESADKFYGVKFRNKVSHIDV
ISAEQAKDFVEDDTTHG
NT seq
3654 nt
NT seq
+upstream
nt +downstream
nt
atgtacatcaaacaggtcatcattcaggggttccgaagttacagggaccagactgtggtg
gatcctttcagtccaaagtccaatgtcatcgtgggaagaaatggatcgggaaaaagtaac
tttttctacgccattcagtttgtgctcagcgatgaattcagccatcttcgccccgaacag
cgcctggccttgctccatgagggaactggtcctcgtgtcatctcagcttttgtggagatt
atatttgacaattctgacaacaggttgccgatcgacaaagaagaggtatccctccgccgt
gtcatcggcgccaagaaggaccagtacttcttagacaagaagatggtgactaaaaatgac
gtcatgaacctcttggagagtgctggtttctcccgtagtaacccctactacatcgtcaag
caggggaagattaaccagatggctacagcccctgattcccagcgtctgaagctgctacgt
gaggttgcaggaaccagggtgtacgacgagcgcaaggaggagtccatctccctcatgaag
gaaacagagggtaagagagagaagatcaatgagctgctgaagtacattgaggagcgtctc
cagaccctggaggatgagaaggaggagctggctcagtaccagaagtgggacaagatgagg
agggctcttgagtacactatctataaccaggagctcaacgagacacgtgccaagctggac
gagttgtcctccaagagagagacctgtggagacaagtccagacatctgagagatgcccag
caggatgccagagacaaagtagaggagacagagcgtgtggtgcgtgagaagaagtctaag
atcagtgccatgaaggaggagaaggagcagctgagctcagagagacaggagcagattaaa
cagaggaccaagctggagctcaaatccaaagacctgcaggaggagctggccggcaacagc
gaacagaagaaacgtctgctgaaggagcggcagaagctgctagagaagatagaagagaag
cagaaggagctgcaggagactgagcccaagttcaacactgtgaaggagagggaggagagg
ggcatcgccagactggcccaggccacccaggagagaacagacctgtacgccaagcagggc
cgtggcagccagtttacttctaaagaggagagggacaagtggatcaagaaggaactcaag
tccctagaccaggccatcaatgacaagaagaggcagattgctgccatccataaagacctg
gaggacactgagaccaacaaggagaagaacctggaacagtatagtaaactggaccaggac
ctgaatgaggtgaagaccagggtggaagagctggacaagaaatactacgaagtcaagaat
aagaaggatgagctgcagagcgagagaaactatctgtggcgggaggagaacgctgagcag
caggccctggcagccaaacgagaggagctggagaagaaacaacagctccttagagcagcc
accggcaaggccattctgaacggtattgacagcatcaacaaggtgctggagcatttccgc
agaaaggggatcaaccagcacgtcatcaacggttaccatggcatcgtcatgaacaacttt
gagtgtgagcccgccttttacacctgtgtggaggtcaccgcgggaaccaggttgttttac
cacatagtggagacagacgaggtgagcaccaagatcctgacggagttcaacaagatgaac
ctgcctggagaggtcaccttcctgcccctcagcaagctggacgtcagggacaccgcctac
cctgagaccaacgatgccatccccatgatcagcaagctgcgctacagccagcagtttgac
aaggccttcaagcatgtgtttggaaagaccctgatctgtcgtagcatggaagtgtccacc
cagctggccagggcattcaccatggactgtataacactggagggtgaccaggtgtcccac
cgcggggcgctgacagggggttactatgacaccaggaagtcacgtctggagctgcagaag
gacatgaggaaggctgaggaggagctgggagagctggaggccaaactcaacgagaacctc
cgcaggaacatcgaacgtatcaacaatgagatcgaccagctaatgaaccagatgcaacag
attgagacccagcagaggaagttcaaggcctccagagactccatcctgtctgagatgaag
atgctcaaggagaagaggcagcagtccgagaagacgtttatgccgaagcaacgttcactg
cagtctctagaggccagtctccatgccatggagtccaccagggagtctctgaaggctgag
ctggggacagacctgctctctcagctcagtctggaggaccagagacgtgtggatgacctc
aacgacgagatcagacagctgcagcaggacaacaggcagctgctgaatgagaggatcaag
ctggaggggatcatgaccagggtggagacgtacctcaacgagaacctacggaaacgcctt
gaccaagtagaacaggagttgaatgagctgagagagactgagggaggcaccatgctcaca
gccacctcctcagagctggagggaatcaacaaacgcatcaaagatacactggcacgctcc
gaggacctggatgtgctgatcgacaaggcagagattgaggtcaaggaccacgccaagagc
atggaccgctggaagaacgtangaaaggaacagaacgacgccatcaaccatgacaccaag
gagttggagaagatgaccaaccgacagggcatgctgctgaagaagaaagaggagtgcatg
aagaagatcagggagctggggtccttaccacaggaggccttcgagaagtaccagaccctc
acactcaaacagctgttccgtaagctagagcagtgcaacacagagctgaagaagtacagc
cacgtgaacaagaaggccctggaccagtttgtcaacttctctgagcagaaggagaagctg
atcaagcgccaggacgagctggagcgaggacacaagtccatcatggagctcatgaacgtg
ctggagctcaggaagtacgaggccatccagctcacattcaaacaggtgtctaagaacttc
agtgaggtgttccagaagctggttccagggggcaaggccactctggtgatgaaaaagggt
gacacggaggggggtcagtcccaggacgagggggaggggggcaccgacagcgagaagggc
tcaggctctcagagcagtgtgccctctgtagaccagttcaccggagtcggcatcagggtg
tcgttcacggggaagcagggggagatgagggagatgcagcagctctctggaggtcagaag
tccctggtggccctggccctcatcttcgccatccagaagtgtgaccccgctcctttctac
ctgtttgatgagatcgaccaggccctggacgcacagcacaggaaggctgtctcggatatg
attgtagagctggcgggccatgcccagtttatcaccactacgttcagacctgagcttctg
gagtcagccgacaagttctacggagtcaagttcagaaacaaggtgagtcacattgacgtg
atctcggcagagcaggcgaaagactttgtggaggacgacactacccatggttaa
DBGET
integrated database retrieval system
