Oncorhynchus tshawytscha (Chinook salmon): 112263469
Help
Entry
112263469 CDS
T05605
Name
(RefSeq) cyclic nucleotide-gated cation channel beta-1-like isoform X1
KO
K04952
cyclic nucleotide gated channel beta 1
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04744
Phototransduction
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09150 Organismal Systems
09157 Sensory system
04744 Phototransduction
112263469
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
otw04040
]
112263469
Ion channels [BR:
otw04040
]
Voltage-gated cation channels
Cyclic nucleotide-gated channel (CNG)
112263469
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
cNMP_binding
Motif
Other DBs
NCBI-GeneID:
112263469
NCBI-ProteinID:
XP_042186691
LinkDB
All DBs
Position
LG12:54705913..54782258
Genome browser
AA seq
1396 aa
AA seq
DB search
MFSWVVKGVPQPPGKLGDEEKTNASPATVKQVTFKEEKKQEALKPAKAKEEEVAEENGGE
AGVLTWITHGFANSLPQPAGTARLGRSNTEPSTTQEENRQGSVIGWIAQGLASVVPQPEL
KNMEEVEPAETTEIAEVIKVPEVKKKPSIAEVSKAPEVKKKPSIAEVSKAPEVKKKPSIA
EVSKAPEVKKKPSIAEVSNAPEVKKTPTVHAIQDVPDAEPLPHIPVVEVMSDEEPQEEKG
IPPRVYEWIKQGFEKVVPQPADNKDVSAKAACPQKVTSKSPEAEEEAKANVVGWIVQGFG
RMLPQPVLTPSGSENAVQNILILQGHEEMVLEEVDPDWEEKENKVAQGAALLQALPSLIP
QQVLEMQQEAEDAETQTERWTPLIESIKKEAEEAAMVKVEEKLQQQLKEARMAEEVARQA
AEMAVRQLEEEQAASAQRATDSQQETDGEQLPNIQEEENEEDPELKLLHESDESMENKSP
EKNKAIEVTVVENILSVEDNTLMDIVVAEDNEISEDNKAKAVEPKVENKITEVDLKRCLM
DVCPAEGLSEVEAEAESVEPSPPVSTPREASPEPEPEPQNKQSPTATEAPAVTEQPEPAD
QKTPPTAATQEEESADEAGCEGSVGKDRGGNVLPAVKVEDVDRDVGMRGGRNIPQIITSQ
DPLSISLTVSLAPGTKRSKAVAADGSLLPVEERSAEEDDVFGVDDLEMQTGLLTVEDGDR
PASAASYGSVIVQERVTTLVKLFKARTVRKKEKLMDPDESEEDSPQTSPAKAPPPPPPPP
EEDKDISAPVEDEEEEEYWDFYGYPIKILKLPKMPPLPSWLQTIVDYRFPSSIDPYTDLV
YVVWLFFVMMAWNWNVWLIPVRWAFPYQTADNIYWWLLMDYTCDLIYITDILVFQPRLEF
VRGGDIVCDKKDMRDNYMTTERFKMDCVSMFPMEIFYYFTGVNSLLRFPRLLKYMAFFEF
NDRLEAVMKKAYIYRVILTTSYLLYSLHINACLFYWGSDYEGLGSTKWVYNGKGNSYIRC
YYFAVKTLITIGGLPDPTTVFEITFQLVNYFVGVFAFSIMIGQMRDVVGAATAGQNYYRA
CMDNTIKYMTSYHIPTEVQNRVKTWYDYTWKIQGMLDEQELLIQLPDKMRMDMAVDVNYS
IVSKVALFQGCDRQMIFDMLMRLKSVVYLPGDFVCKKGEIGREMYIIKQGEVQVVGGPDL
KTVFVTIRAGSVFGEISLLAGGGGNRRTANVMAHGFANLFILDKRDLSDILVHYPESQKL
LRKKAKKMLTKDKKPEEKAEVKETAEVIPDRPETPKLFKAALVITEQAGIKGTFAKLKEG
YKPAETESSGLPIPPPSPMVHRRSPIPPTDAQVEDDEDAVSETTDSMMLIRMTRRHKGEE
LLSVEQKPGDEEEEKK
NT seq
4191 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctgggtggtgaagggggttccccagcctcctgggaaactaggagatgaggag
aagaccaatgcctcacctgcaacagtaaaacaagtaacattcaaagaagagaagaaacaa
gaagctctaaaacctgccaaggccaaagaggaggaggtcgccgaggagaatggtggtgag
gctggagtgttgacttggatcacccatggctttgctaattctcttccccagcctgctggg
acagcccggctaggcagatccaacactgagccctccaccacacaggaggagaacaggcag
gggtcagtcatcggctggattgcccagggattggccagtgtggttccacagcctgaattg
aaaaacatggaggaggtggagcctgcagagacaacagagattgcagaggtgatcaaggtg
ccggaggttaagaaaaaacctagcattgcagaggtgagcaaggcgccggaggttaagaaa
aaacctagcattgcagaggtgagcaaggcgccggaggttaagaaaaaacctagcattgca
gaggtgagcaaggcgccggaggttaagaaaaaacctagcattgcagaggtgagcaatgcg
ccggaggttaagaaaacacctaccgtgcatgctatccaagatgtcccagatgcagagcct
cttcctcatattcctgtggtggaggttatgtcagatgaagagcctcaagaagagaaggga
atcccacccagggtgtatgagtggatcaaacagggttttgagaaggtggttccacagcca
gctgacaacaaagacgtctcagcgaaggccgcctgcccacagaaagtgacctctaaatct
ccggaagctgaagaggaggccaaagcaaatgtggtgggctggattgttcagggcttcggt
cgtatgttacctcagcctgtcctgactccaagtggatcggagaacgctgttcagaacatc
ctcatcctgcaaggccatgaagaaatggttctggaggaggtggacccggattgggaggag
aaggagaacaaagtggctcagggagcggccctgctccaggccttaccctcactcataccc
cagcaggttctggagatgcaacaagaagcagaagatgcagagacacagacagagagatgg
actcccctcatagagagcataaagaaagaggcagaggaggctgctatggtgaaagtggaa
gagaagctgcagcagcagttaaaagaagcacggatggctgaggaggtggccagacaggcg
gctgagatggcagttagacaactagaggaggagcaggctgccagtgcccagagggccaca
gactcacagcaagagactgatggagagcaactgcccaatatccaggaggaagagaacgag
gaagaccctgagttgaaactgcttcacgagagcgacgagagcatggagaataaaagtccc
gagaaaaataaagccatagaggttactgtcgttgagaatattctgagcgttgaagacaat
actctgatggatattgtagttgctgaagacaatgagatatctgaagacaacaaagctaaa
gctgtggagcctaaagtggaaaataaaatcacagaagtggacctgaaaaggtgcctgatg
gatgtgtgtccagccgaggggttgtccgaggttgaggcagaggcggagtcagtcgaacca
agccccccagtgtctacccccagagaggcctcccctgaaccagaaccagagccgcaaaat
aaacagtctcccacagcgacagaggccccggcagtgaccgaacagccagaaccagccgac
cagaagactccacccactgccgcaactcaggaggaggaaagtgccgacgaagcagggtgt
gaagggagcgttggaaaggacagaggagggaatgtgctgccagcggttaaagtggaggat
gtggacagagacgtagggatgagagggggtcgcaacatcccccagatcatcacctcccag
gaccccctgtccatctctctgaccgtgtctctcgcccccgggaccaagcgcagcaaagct
gtggctgcagatggctcgctcctcccggtggaagagagaagtgctgaagaggatgatgtt
tttggtgttgatgacttggagatgcagaccggcctcctgactgtggaagatggggatcgt
ccagcatcagcggcaagctatggcagtgtgattgtccaagagagagtgactacactggtc
aagctgtttaaggcgaggacggtccgcaagaaggaaaaactgatggaccctgacgaatct
gaggaagacagccctcaaacctccccagccaaggcgccccctcctcctccccctccccca
gaagaggacaaggacatctcagccccggtggaggatgaagaggaggaggagtactgggac
ttctatggatacccaatcaaaatcctcaaacttcccaaaatgcccccacttcctagttgg
cttcaaaccatagtggactatcgtttcccttccagcatcgacccttatactgacctggtc
tacgtggtgtggctgttctttgtgatgatggcgtggaactggaacgtgtggctgatcccg
gtgcgctgggccttcccctaccagactgcagacaacatctactggtggctgttaatggac
tacacctgtgaccttatttacatcaccgacatcctggtctttcagccccgcctggagttt
gtacgcggaggagatattgtgtgtgacaaaaaggacatgagagacaactacatgacaaca
gaacgatttaagatggattgtgtcagtatgttccccatggagatattttactactttact
ggcgttaactcccttctcagattcccccgcctactgaagtacatggctttctttgagttc
aacgaccgtttggaagcagtcatgaagaaagcctacatctacagagtgatcctgaccact
tcctacctgttgtattctctccacatcaacgcctgtctgttctattggggttctgactac
gaggggctggggtccactaagtgggtctacaacggcaaagggaacagttatatccggtgt
tactactttgctgtaaagaccctgatcaccatcgggggtctcccggacccaaccaccgtg
tttgagatcacattccagctcgtcaactattttgttggcgtctttgctttctccatcatg
attggtcagatgagagatgtggtgggggctgccacagcgggtcagaactactaccgggcc
tgtatggacaacaccatcaagtatatgacctcctaccacatccccacagaggtccagaac
cgagtcaagacctggtacgactacacctggaaaatacagggcatgctggatgagcaggag
ctgttgatccagctgccggataagatgaggatggacatggctgtggatgttaactactcc
atcgtgagtaaagtggccctgttccagggctgtgacagacagatgatctttgacatgttg
atgaggctcaagtctgtggtctacctgcctggggactttgtctgtaaaaagggtgagatc
ggcagggagatgtatatcatcaagcagggggaggttcaggtggtgggaggacctgatttg
aagactgtgtttgtgacaatcagggccggctctgtgtttggagaaatcagcttgctggca
gggggcggggggaacagacgcacggccaatgtgatggctcacggattcgcgaacctcttc
atcctggataagagggacctctcagacatcctggtgcactaccccgagtcccagaaactc
ctccgcaagaaggccaagaaaatgctgacgaaggataagaagccagaggaaaaagcagag
gtgaaggagactgccgaggtgatcccagacaggccagagacccccaagctgttcaaagca
gccctggtgattacagagcaggcaggcattaagggcaccttcgccaagctgaaagagggc
tacaaacctgccgagactgagtcctctggactccccatacctcctccctccccgatggtg
caccgtcgctcccccatcccccctacagatgcccaggtcgaggatgacgaagatgcggtt
tccgagacgaccgacagtatgatgctcatccgcatgacacgccgtcacaaaggcgaggag
ctcctgtccgtcgagcagaagcctggagatgaagaggaggagaagaagtag
DBGET
integrated database retrieval system
